메뉴 건너뛰기




Volumn 49, Issue 2, 2004, Pages 181-190

Genetic diversity and distribution of periphytic Synechococcus spp. in biofilms and picoplankton of Lake Constance

Author keywords

Denaturing gradient gel electrophoresis; Periphyton; Phylogenetic analysis; Quantitative Taq nuclease assay; Synechococcus type picocyanobacteria

Indexed keywords

PHYCOERYTHRIN; RNA 16S; RNA 23S;

EID: 3142703159     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsec.2004.03.003     Document Type: Article
Times cited : (32)

References (34)
  • 1
    • 0022823038 scopus 로고
    • Algal picoplankton from marine and freshwater ecosystems: A multidisciplinary perspective
    • Stockner J.G., Antia N.J. Algal picoplankton from marine and freshwater ecosystems: a multidisciplinary perspective. Can. J. Aquat. Sci. 43:1986;2472-2503
    • (1986) Can. J. Aquat. Sci. , vol.43 , pp. 2472-2503
    • Stockner, J.G.1    Antia, N.J.2
  • 2
    • 0000449745 scopus 로고    scopus 로고
    • Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: A review
    • Partensky F., Blanchot J., Vaulot D. Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review. Bull. Inst. Oceanogr. 19:1999;457-475
    • (1999) Bull. Inst. Oceanogr. , vol.19 , pp. 457-475
    • Partensky, F.1    Blanchot, J.2    Vaulot, D.3
  • 3
    • 0026395395 scopus 로고
    • The abundance and composition of freshwater picocyanobacteria in relation to light penetration
    • Pick F.R. The abundance and composition of freshwater picocyanobacteria in relation to light penetration. Limnol. Oceanogr. 36:1991;1457-1462
    • (1991) Limnol. Oceanogr. , vol.36 , pp. 1457-1462
    • Pick, F.R.1
  • 4
    • 0002627693 scopus 로고    scopus 로고
    • Fluorometric characterization of two picocyanobacteria strains from lakes of different underwater light quality
    • Callieri C., Amicucci E., Bertoni R., Vörös L. Fluorometric characterization of two picocyanobacteria strains from lakes of different underwater light quality. Int. Rev. ges. Hydrobiol. 81:1996;13-23
    • (1996) Int. Rev. Ges. Hydrobiol. , vol.81 , pp. 13-23
    • Callieri, C.1    Amicucci, E.2    Bertoni, R.3    Vörös, L.4
  • 5
    • 7344251168 scopus 로고    scopus 로고
    • Freshwater picocyanobacteria along a trophic gradient and light quality range
    • Vörös L., Callieri C., V.-Balogh K., Bertoni R. Freshwater picocyanobacteria along a trophic gradient and light quality range. Hydrobiologia. 369/370:1998;117-125
    • (1998) Hydrobiologia , vol.369-370 , pp. 117-125
    • Vörös, L.1    Callieri, C.2    V.-Balogh, K.3    Bertoni, R.4
  • 6
    • 2642630756 scopus 로고    scopus 로고
    • Water column transparency and the distribution of spectrally distinct forms of phycoerythrin-containing organisms
    • Wood A.M., Phinney D.A., Jentsch C.S. Water column transparency and the distribution of spectrally distinct forms of phycoerythrin-containing organisms. Mar. Ecol. Prog. Ser. 162:1998;25-31
    • (1998) Mar. Ecol. Prog. Ser. , vol.162 , pp. 25-31
    • Wood, A.M.1    Phinney, D.A.2    Jentsch, C.S.3
  • 8
    • 0000126933 scopus 로고    scopus 로고
    • Seasonal and interannual variability of picocyanobacteria in Lake Constance (1987-1997)
    • Gaedke U., Weisse T. Seasonal and interannual variability of picocyanobacteria in Lake Constance (1987-1997). Arch. Hydrobiol. Spec. Issues Advanc. Limnol. 53:1998;143-158
    • (1998) Arch. Hydrobiol. Spec. Issues Advanc. Limnol. , vol.53 , pp. 143-158
    • Gaedke, U.1    Weisse, T.2
  • 9
    • 0002216090 scopus 로고
    • Dynamics of autotrophic picoplankton in marine and freshwater ecosystems
    • Weisse T. Dynamics of autotrophic picoplankton in marine and freshwater ecosystems. Adv. Microbiol. Ecosyst. 13:1988;327-370
    • (1988) Adv. Microbiol. Ecosyst. , vol.13 , pp. 327-370
    • Weisse, T.1
  • 10
    • 0029661226 scopus 로고    scopus 로고
    • Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat
    • Ferris M.J., Ruff-Roberts A.L., Kopczynski E.D., Bateson M.M., Ward D.M. Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat. Appl. Environ. Microbiol. 62:1996;1045-1050
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1045-1050
    • Ferris, M.J.1    Ruff-Roberts, A.L.2    Kopczynski, E.D.3    Bateson, M.M.4    Ward, D.M.5
  • 11
    • 0031737291 scopus 로고    scopus 로고
    • A natural view of microbial biodiversity within hot spring cyanobacterial mat communities
    • Ward D.M., Ferris M.J., Nold S.C., Bateson M.M. A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiol. Mol. Biol. Rev. 62:1998;1353-1370
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 1353-1370
    • Ward, D.M.1    Ferris, M.J.2    Nold, S.C.3    Bateson, M.M.4
  • 12
    • 0033775190 scopus 로고    scopus 로고
    • Evolution of thermotolerance in hot spring cyanobacteria of the genus Synechococcus
    • Miller S.R., Castenholz R.W. Evolution of thermotolerance in hot spring cyanobacteria of the genus Synechococcus. Appl. Environ. Microbiol. 66:2000;4222-4229
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4222-4229
    • Miller, S.R.1    Castenholz, R.W.2
  • 13
    • 0031810473 scopus 로고    scopus 로고
    • The phylogeny of unicellular extremely halotolerant cyanobacteria
    • Garcia-Pichel F., Nübel U., Muyzer G. The phylogeny of unicellular extremely halotolerant cyanobacteria. Arch. Microbiol. 169:1998;469-482
    • (1998) Arch. Microbiol. , vol.169 , pp. 469-482
    • Garcia-Pichel, F.1    Nübel, U.2    Muyzer, G.3
  • 14
    • 0035983608 scopus 로고    scopus 로고
    • Picobenthic cyanobacterial populations revealed by 16S rRNA-targeted in situ hybridization
    • Abed R.M., Schönhuber W., Amann R., Garcia-Pichel F. Picobenthic cyanobacterial populations revealed by 16S rRNA-targeted in situ hybridization. Environ. Microbiol. 4:2002;375-382
    • (2002) Environ. Microbiol. , vol.4 , pp. 375-382
    • Abed, R.M.1    Schönhuber, W.2    Amann, R.3    Garcia-Pichel, F.4
  • 15
    • 0032814949 scopus 로고    scopus 로고
    • Mechanisms of dominance: Coexistence of picocyanobacterial genotypes in a freshwater ecosystem
    • Postius C., Ernst A. Mechanisms of dominance: coexistence of picocyanobacterial genotypes in a freshwater ecosystem. Arch. Microbiol. 172:1999;69-75
    • (1999) Arch. Microbiol. , vol.172 , pp. 69-75
    • Postius, C.1    Ernst, A.2
  • 16
    • 1842374038 scopus 로고
    • Beobachtungen über die Algenflora im Uferbereich des Bodensees (Überlinger See und Gnadensee)
    • Mattern A. Beobachtungen über die Algenflora im Uferbereich des Bodensees (Überlinger See und Gnadensee). Arch. Hydrobiol. 37(Suppl.):1970;1-163
    • (1970) Arch. Hydrobiol. , vol.37 , Issue.SUPPL. , pp. 1-163
    • Mattern, A.1
  • 17
    • 0032999983 scopus 로고    scopus 로고
    • Detection of seven major evolutionary lineages in cyanobacteria based on 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains
    • Honda D., Yokota A., Sugiyama J. Detection of seven major evolutionary lineages in cyanobacteria based on 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains. J. Mol. Evol. 48:1999;723-739
    • (1999) J. Mol. Evol. , vol.48 , pp. 723-739
    • Honda, D.1    Yokota, A.2    Sugiyama, J.3
  • 18
    • 0034984791 scopus 로고    scopus 로고
    • Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content
    • Robertson B.R., Tezuka N., Watanabe M.M. Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content. Int. J. Syst. Evol. Microbiol. 51:2001;861-871
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 861-871
    • Robertson, B.R.1    Tezuka, N.2    Watanabe, M.M.3
  • 19
    • 0141856627 scopus 로고    scopus 로고
    • Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses
    • Crosbie N.D., Pockl M., Weisse T. Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses. Appl. Environ. Microbiol. 69:2003;5716-5721
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 5716-5721
    • Crosbie, N.D.1    Pockl, M.2    Weisse, T.3
  • 20
    • 0037259888 scopus 로고    scopus 로고
    • Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis
    • Ernst A., Becker S., Wollenzien U.I.A., Postius C. Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis. Microbiology. 149:2003;217-228
    • (2003) Microbiology , vol.149 , pp. 217-228
    • Ernst, A.1    Becker, S.2    Wollenzien, U.I.A.3    Postius, C.4
  • 21
    • 0037545904 scopus 로고    scopus 로고
    • Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea
    • Fuller N.J., Marie D., Partensky F., Vaulot D., Post A.F., Scanlan D.J. Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea. Appl. Environ. Microbiol. 69:2003;2430-2443
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2430-2443
    • Fuller, N.J.1    Marie, D.2    Partensky, F.3    Vaulot, D.4    Post, A.F.5    Scanlan, D.J.6
  • 22
    • 0031889272 scopus 로고    scopus 로고
    • Rapid diversification of marine picoplankton with dissimilar light harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (cyanobacteria)
    • Urbach E., Scanlan D.J., Distel D.L., Waterbury J.B., Chisholm S.W. Rapid diversification of marine picoplankton with dissimilar light harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (cyanobacteria). J. Mol. Evol. 46:1998;188-201
    • (1998) J. Mol. Evol. , vol.46 , pp. 188-201
    • Urbach, E.1    Scanlan, D.J.2    Distel, D.L.3    Waterbury, J.B.4    Chisholm, S.W.5
  • 23
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:1993;695-700
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 24
    • 0033754285 scopus 로고    scopus 로고
    • PCR bias in ecological analysis: A case study for quantitative Taq nuclease assays in analyses of microbial communities
    • Becker S., Böger P., Oehlmann R., Ernst A. PCR bias in ecological analysis: a case study for quantitative Taq nuclease assays in analyses of microbial communities. Appl. Environ. Microbiol. 66:2000;4945-4953
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4945-4953
    • Becker, S.1    Böger, P.2    Oehlmann, R.3    Ernst, A.4
  • 25
    • 0036727243 scopus 로고    scopus 로고
    • Quantitative tracing, by Taq nuclease assays, of a Synechococcus ecotype in a highly diversified natural population
    • Becker S., Fahrbach M., Böger P., Ernst A. Quantitative tracing, by Taq nuclease assays, of a Synechococcus ecotype in a highly diversified natural population. Appl. Environ. Microbiol. 68:2002;4486-4494
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 4486-4494
    • Becker, S.1    Fahrbach, M.2    Böger, P.3    Ernst, A.4
  • 26
    • 0015076683 scopus 로고
    • Purification and properties of unicellular blue-green algae (order Chroococcales)
    • Stanier R.Y., Kunisawa R., Mandel M., Cohen-Baziere G. Purification and properties of unicellular blue-green algae (order Chroococcales). Bacteriol. Rev. 35:1971;171-205
    • (1971) Bacteriol. Rev. , vol.35 , pp. 171-205
    • Stanier, R.Y.1    Kunisawa, R.2    Mandel, M.3    Cohen-Baziere, G.4
  • 27
    • 3142700372 scopus 로고
    • Cyanobacterial picoplankton from Lake Constance, I. Isolation by fluorescence characteristics
    • Ernst A. Cyanobacterial picoplankton from Lake Constance, I. Isolation by fluorescence characteristics. J. Plankton Res. 13:1991;13071312
    • (1991) J. Plankton Res. , vol.13 , pp. 13071312
    • Ernst, A.1
  • 28
    • 84995012781 scopus 로고
    • Cyanobacterial picoplankton from Lake Constance. II. Classification of isolates by cell morphology and pigment composition
    • Ernst A., Sandmann G., Postius C., Brass S., Kenter U., Böger P. Cyanobacterial picoplankton from Lake Constance. II. Classification of isolates by cell morphology and pigment composition. Bot. Acta. 105:1992;161-167
    • (1992) Bot. Acta , vol.105 , pp. 161-167
    • Ernst, A.1    Sandmann, G.2    Postius, C.3    Brass, S.4    Kenter, U.5    Böger, P.6
  • 29
    • 0029660298 scopus 로고    scopus 로고
    • Persistence and genetic diversity among strains of phycoerythrin-rich cyanobacteria from the picoplankton of Lake Constance
    • Postius C., Ernst A., Kenter U., Böger P. Persistence and genetic diversity among strains of phycoerythrin-rich cyanobacteria from the picoplankton of Lake Constance. J. Plankton Res. 18:1996;1159-1166
    • (1996) J. Plankton Res. , vol.18 , pp. 1159-1166
    • Postius, C.1    Ernst, A.2    Kenter, U.3    Böger, P.4
  • 30
    • 0024234855 scopus 로고
    • CLUSTAL: A package for performing multiple sequence alignment on a microcomputer
    • Higgins D.G., Sharp P.M. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene. 73:1988;237-244
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 31
    • 0000732090 scopus 로고
    • Evolution in protein molecules
    • Muntu H.N. New York: Academic Press
    • Jukes T.H., Cantor C.R. Evolution in protein molecules. Muntu H.N. Mammalian Protein Metabolism. vol. III:1969;21-132 Academic Press, New York
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0027156708 scopus 로고
    • TREECON: A software package for the construction and drawing of evolutionary trees
    • Van de Peer Y., De Wachter R. TREECON: a software package for the construction and drawing of evolutionary trees. Comput. Appl. Biosci. 9:1994;177-182
    • (1994) Comput. Appl. Biosci. , vol.9 , pp. 177-182
    • Van De Peer, Y.1    De Wachter, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.