Modelling the spatial and temporal variability of the SW lagoon of New Caledonia I: A new biogeochemical model based on microbial loop recycling

Marine Pollution Bulletin

Volumn 61, Issue 7-12, 2010, Pages 465-479

  Faure, Vincent ^a   Pinazo, Christel ^a   Torréton, Jean Pascal ^b   Jacquet, Séverine ^b  

^a AIX MARSEILLE UNIVERSITY   (France)

^b UNIVERSITÉ MONTPELLIER 2   (France)

Author keywords

Bacterioplankton; Biogeochemical model; Microbial loop; New Caledonia; Nutrients; Phytoplankton; Regeneration

Indexed keywords

BACTERIOPLANKTONS; BIOGEOCHEMICAL MODELS; MICROBIAL LOOP; NEW CALEDONIA; REGENERATION;

ALGAE CONTROL; ANALYTICAL GEOCHEMISTRY; BIOGEOCHEMISTRY; BIOLOGICAL MATERIALS; ECOSYSTEMS; LAKES; NUTRIENTS; ORGANIC COMPOUNDS; PHYTOPLANKTON; RECYCLING; SENSITIVITY ANALYSIS; STOICHIOMETRY;

THREE DIMENSIONAL;

CARBON; CHLOROPHYLL A; DISSOLVED ORGANIC MATTER; INORGANIC COMPOUND; NITROGEN;

BACTERIOPLANKTON; BIOGEOCHEMISTRY; CALIBRATION; CARBON CYCLE; COASTAL LAGOON; COMPUTER SIMULATION; DISSOLVED ORGANIC MATTER; MICROBIAL LOOP; NITROGEN CYCLE; NUMERICAL MODEL; NUTRIENT AVAILABILITY; PARAMETERIZATION; PHYTOPLANKTON; REGENERATION; SENSITIVITY ANALYSIS; SPATIAL VARIATION; STOICHIOMETRY; TEMPORAL VARIATION;

ARTICLE; BIOGEOCHEMICAL CYCLING; BIOLOGICAL MODEL; CONTROLLED STUDY; ECOSYSTEM REGENERATION; ENVIRONMENTAL IMPACT ASSESSMENT; ENVIRONMENTAL MANAGEMENT; ENVIRONMENTAL MONITORING; FIELD EXPERIMENT; HYDRODYNAMICS; INTERMETHOD COMPARISON; LAGOON; MICROBIAL METABOLISM; NEW CALEDONIA; NONHUMAN; ORGANIC MATTER PRODUCTION; PARTICULATE MATTER; PELAGIC ZONE; PHYSICAL MODEL; REPRODUCIBILITY; SENSITIVITY ANALYSIS; STOICHIOMETRY; VALIDATION PROCESS;

ANIMALS; COMPUTER SIMULATION; ENVIRONMENTAL MONITORING; MODELS, THEORETICAL; PHYTOPLANKTON; SEAWATER; TIME FACTORS; WATER MICROBIOLOGY; ZOOPLANKTON;

NEW CALEDONIA [MELANESIA];

BACTERIA (MICROORGANISMS);

EID: 77956011908     PISSN: 0025326X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.marpolbul.2010.06.041     Document Type: Article

References (73)

1. Anderson T.R., Ducklow H.W. Microbial loop carbon cycling in ocean environments studied using a simple steady-state model. Aquatic Microbial Ecology 2001, 26(1):37-49.
2. Arias-Gonzalez J.E., Delesalle B., Salvat B., Galzin R. Trophic functioning of the Tiahura reef sector, Moorea Island, French Polynesia. Coral Reefs 1997, 16(4):231-246.
3. Azam F., Fenchel T., Field J.G., Gray J.S., Meyerreil L.A., Thingstad F. The ecological role of water-column microbes in the sea. Marine Ecology Progress Series 1983, 10:257-263.
4. Baines S.B., Pace M.L. The production of dissolved organic matter by phytoplankton and its importance to bacteria: patterns across marine and freshwater systems. Limnology and Oceanography 1991, 36(6):1078-1090.
5. 14C production and other rate terms during the JGOFS Equatorial Pacific experiment. Deep-Sea Research Part I - Oceanographic Research Papers 1999, 46(4):637-654.
6. Billen, G., 1991. Protein degradation in aquatic environments. In: Ryszard J. Chrost (Ed.), Microbial Enzymes in Aquatic Environments, pp. 122-142.
7. Billen B., Becquevort S. Phytoplankton-bacteria relationship in the Antarctic marine ecosystem. Polar Research 1991, 10(1):245-253.
8. Binet, D., Le Borgne, R., 1996. The coastal station of Nouméa: ten years of observations about the hydrology and pelagos of the south-west lagoon of New-Caledonia, Archives Sciences de la Mer Biologie Marine no. 2, Editions IRD, Nouméa, p. 37.
9. Blaize, S., Lacoste, D., 1995. Atlas climatique de la Nouvelle Calédonie. Météo France, Nouméa (Nouvelle-Calédonie), p. 104.
10. Briand E., Pringault O., Jacquet S., Torréton J.-P. The use of oxygen microprobes to measure bacterial respiration for determining bacterioplankton growth efficiency. Limnology and Oceanography: Methods 2004, 2:406-416.
11. Bujan S., Grenz C., Fichez R., Douillet P. Biochemical recycling in the south-west lagoon of New Caledonia. A box model approach. Comptes Rendus de l'Academie des Sciences Serie III Sciences de la Vie 2000, 323(2):225-233.
12. Caperon J., Meyer J. Nitrogen-limited growth of marine phytoplankton. II. Uptake kinetic and their role in nutrient growth of phytoplankton. Deep-Sea Research Part I - Oceanographic Research Papers 1972, 19(9):619-632.
13. Carlson C.A. Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea. Nature 1994, 371(6496):405-408.
14. Carlson C.A., Ducklow H.W., Hansell D.A., Smith W.O. Organic carbon partitioning during spring phytoplankton blooms in the Ross Sea polynya and the Sargasso Sea. Limnology and Oceanography 1998, 43(3):375-386.
15. Caron D.A., Peele E.R., Lim E.L., Dennett M.R. Picoplankton and nanoplankton and their trophic coupling in surface waters of the Sargasso Sea south of Bermuda. Limnology and Oceanography 1999, 44(2):259-272.
16. Christian J.R., Anderson T.R. Modeling DOM biogeochemistry. Biogeochemistry of Marine Dissolved Organic Matter 2002, 717-756. Academic Press. D.A. Hansell, C.A. Carlson (Eds.).
17. Chrost R.J. Microbial ectoenzymes in aquatic environments. Aquatic Microbial Ecology. Biochemical and Molecular Approaches 1990, 47-78. Springer-Verlag, New York. J. Overbeck, R.J. Chrost (Eds.).
18. Coffin R.B., Connolly J.P., Harris P.S. Availability of dissolved organic carbon to bacterioplankton examined by oxygen utilization. Marine Ecology Progress Series 1993, 101(1-2):9-22.
19. Connolly J.P., Coffin R.B. Modelling carbon utilization by bacteria in natural water systems. Modelling the Metabolic and Physiologic Activities of Micro-Organisms 1992, 249-276. John Wiley, Chichester. C.J. Hurst (Ed.).
20. Copping A.E., Lorenzen C.J. Carbon budget of a marine phytoplankton-herbivore system with carbon-14 as a tracer. Limnology and Oceanography 1980, 25(5):873-882.
21. Dagg M.J. Complete carbon and nitrogen budgets for the carnivorous amphipod, Calliopius laeviusculus (Kroyer). Internationale Revue der Gesamten Hydrobiologie 1976, 61(3):297-357.
22. Déliat, G., 2001. Matière organique dissoute des zones côtières: sources, distribution et biodégradabilité. PhD Thesis. Paris VI University, Paris, p. 276.
23. Droop M.R. Vitamin B12 and marine ecology. IV. The kinetics of uptake growth and inhibition in Monochrysis lutheri. Journal of Marine Biology Association 1968, 48(3):689-733.
24. Ducklow H.W. The bacterial component of the oceanic euphotic zone. FEMS Microbiology Ecology 1999, 30(1):1-10.
25. Eppley R.W. Temperature and phytoplankton growth in the sea. Fishery Bulletin 1972, 70:1063-1085.
26. Fasham M.J.R., Boyd P.W., Savidge G. Modeling the relative contributions of autotrophs and heterotrophs to carbon flow at a Lagrangian JGOFS station in the Northeast Atlantic: the importance of DOC. Limnology and Oceanography 1999, 44(1):80-94.
27. Faure, V., 2006. Modélisation couplée physique-biogéochimique tridimensionnelle: étude de l'écosystème pélagique du lagon Sud-Ouest de Nouvelle-Calédonie. PhD Thesis. Aix-Marseille II University, Marseille, France, p. 234.
28. Faure V., Pinazo C., Torréton J.-P., Douillet P. Relevance of various formulations of phytoplankton chlorophyll a:carbon ratio in a 3D marine ecosystem model. Comptes Rendus Biologies 2006, 329:813-822.
29. Faure V., Pinazo C., Torréton J.-P., Douillet P. Modelling the spatial and temporal variability of the SW lagoon of New Caledonia II: 3D realistic simulations compared with in situ data. Marine Pollution Bulletin 2010, 61:480-502.
30. Findlay S.E.G., Sinsabaugh R.L. Aquatic Ecosystems: Interactivity of Dissolved Organic Matter. Aquatic Ecology 2003, Elsevier Science Ltd., Oxford, p. 512.
31. Fuhrman J.A. Marine viruses and their biogeochemical and ecological effects. Nature 1999, 399(6736):541-548.
32. Fukuda R., Ogawa H., Nagata T., Koike I. Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments. Applied and Environmental Microbiology 1998, 64:9.
33. Geider R.J., MacIntyre H.L., Kana T.M. A dynamic regulatory model of phytoplanktonic acclimation to light, nutrients, and temperature. Limnology and Oceanography 1998, 43(4):679-694.
34. Gerber R.P., Gerber M.B. Ingestion of natural particulate organic matter and subsequent assimilation, respiration and growth by tropical lagoon zooplankton. Marine Biology 1979, 52(1):33-43.
35. Goosen N.K., Van Rijswijk P., De Bie M., Peene J., Kromkamp J. Bacterioplankton abundance and production and nanozooplankton abundance in Kenyan coastal waters western Indian Ocean. Deep-Sea Research Part II - Topical Studies in Oceanography 1997, 44(6-7):1235-1250.
36. Harmon R., Challenor P. A Markov chain Monte Carlo method for estimation and assimilation into models. Ecological Modelling 1997, 101(1):41-59.
37. Heldal M., Norland S., Fagerbakke K.M., Thingstad F., Bratbak G. The elemental composition of bacteria: a signature of growth conditions?. Marine Pollution Bulletin 1996, 33(1-6):3-9.
38. Jacquet, S., 2005. Influence des nutriments sur le réseau trophique microbien planctonique dans le lagon SW de Nouvelle-Calédonie. PhD Thesis. Paris VI University, Paris, France, p. 228.
39. Jacquet S., Delesalle B., Torréton J.-P., Blanchot J. Response of phytoplankton communities to increased anthropogenic influences (Southwestern Lagoon, New Caledonia). Marine Ecology Progress Series 2006, 320:65-78.
40. Kirchman D.L. Limitation of bacterial growth by dissolved organic matter in the subarctic Pacific. Marine Ecology Progress Series 1990, 62(1-2):47-54.
41. Kirchman D.L. Uptake and regeneration of inorganic nutrients by marine heterotrophic bacteria. Microbial Ecology of the Oceans 2000, 261-288. Wiley-Liss, New York. D.L. Kirchman (Ed.).
42. Kirchman D.L., Rich J.H. Regulation of bacterial growth rates by dissolved organic carbon and temperature in the equatorial Pacific Ocean. Microbial Ecology 1997, 33(1):11-20.
43. Kremer P. Respiration and excretion by the ctenophore Mnepiopsis leidyi. Marine Biology 1977, 44(1):43-50.
44. Landry M.R., Constantinou J., Kirshtein J. Microzooplankton grazing in the Central Equatorial Pacific during February and August, 1992. Deep Sea Research Part II: Topical Studies in Oceanography 1995, 42(2-3):657-671.
45. Le Borgne R. Assessment of deep-sea planktonic secondary production by the C/N/P ratios method. Oceanologica Acta 1978, 1(1):107-118.
46. Le Borgne R. The release of soluble end products of metabolism. The biological Chemistry of Marine Copepods 1986, 109-164. Clarendon Press, Oxford. E.D.S. Corner, S.C.M. O'Hara (Eds.).
47. Le Borgne R., Roger C. Caractéristiques de la composition et de la physiologie des peuplements hauturiers de zooplancton et micronecton du Golfe de Guinée. Océanographie Tropicale 1983, 18(2):381-418.
48. Le Borgne R., Blanchot J., Charpy L. Zooplankton of the atoll of Tikehau (Tuamotu Archipelago) and its relations with particulate matter. Marine Biology 1989, 102:341-353.
49. Le Borgne R., Rodier M., Le Bouteiller A., Kulbicki M. Plankton biomass and production in an open atoll lagoon: Uvea, New Caledonia. Journal of Experimental Marine Biology and Ecology 1997, 212:187-210.
50. Le Borgne R., Douillet P., Fichez R., Torréton J.-P. Impact of weather and climate on hydrography and plankton temporal variabilities at different time scales in the southwest lagoon of New Caledonia: a review. Marine Pollution Bulletin 2010, 61:297-308.
51. Lin H.J., Shao K.T., Kuo S.R., Hsieh H.L., Wong S.L., Chen I.M., Lo W.T., Hung J.J. A trophic model of a sandy barrier lagoon at Chiku in southwestern Taiwan. Estuarine Coastal and Shelf Science 1999, 48(5):575-588.
52. Lorenzen C.J. Extinction of light in the ocean by phytoplankton. Journal du Conseil Permanent International pour l'Exploration de la Mer 1972, 34(2):262-267.
53. Lynch M., Weider L.J., Lampert W. Measurement of the carbon balance in Daphnia. Limnology and Oceanography 1986, 31(1):17-33.
54. Mari X., Kerros M.E., Weinbauer M.G. Virus attachment to transparent exopolymeric particles along trophic gradients in the southwestern lagoon of New Caledonia. Applied and Environmental Microbiology 2007, 73(6):5245-5252.
55. Nagata T. Production mechanisms of dissolved organic matter. Microbial Ecology of the Oceans 2000, 121-152. Wiley-Liss, New York. D.L. Kirchman (Ed.).
56. Panikov N.S. Microbial Growth Kinetics 1995, Chapman and Hall, London, p. 378.
57. Pinazo C., Marsaleix P., Millet B., Estournel C., Vehil R. Spatial and temporal variability of phytoplankton biomass in upwelling areas of the Northwestern Mediterranean: a coupled physical and biogeochemical modelling approach. Journal of Marine Systems 1996, 7(2-4):161-191.
58. Pinazo C., Marsaleix P., Millet B., Estournel C., Kondrachoff V., Vehil R. Phytoplankton variability in summer in the Northwestern Mediterranean: modelling of the wind and freshwater impacts. Journal of Coastal Research 2001, 17(1):146-161.
59. Pinazo C., Bujan S., Douillet P., Fichez R., Grenz C., Maurin A. Impact of wind and freshwater inputs on phytoplankton biomass in the coral reef lagoon of New Caledonia during the summer cyclonic period: a coupled three-dimensional biogeochemical modeling approach. Coral Reefs 2004, 23(2):281-296.
60. Renaud F., Pringault O., Rochelle-Newall E. Effects of the colonial cyanobacterium Trichodesmium spp. on bacterial activity. Aquatic Microbial Ecology 2005, 41:261-270.
61. Rochelle-Newall E., Torréton J.-P., Mari X., Pringault O. Phytoplankton-bacterioplankton coupling in the coastal sub-tropical South Pacific. Aquatic Microbial Ecology 2008, 50:221-229.
62. Small L.F., Fowler S.W., Moore S.A., La Rosa J. Dissolved and fecal pellet carbon and nitrogen release by zooplankton in tropical waters. Deep-Sea Research Part I - Oceanographic Research Papers 1983, 30(12):1199-1220.
63. Smith C.L., Tett P. A depth-resolving numerical model of physically forced microbiology at the European shelf edge. Journal of Marine Systems 2000, 26(1):1-36.
64. Steinberg D.K., Carlson C.A., Bates N.R., Goldthwait S.A., Madin L.P., Michaels A.F. Zooplankton vertical migration and the active transport of dissolved organic and inorganic carbon in the Sargasso Sea. Deep-Sea Research Part I - Oceanographic Research Papers 2000, 47(1):137-158.
65. Strom L. Bacterivory: interactions between bacteria and their grazers. Microbial Ecology of the Oceans 2000, 351-386. Wiley-Liss, New York. D.L. Kirchman (Ed.).
66. Tett, P., 1987. Modelling the growth and distribution of marine microplankton. In: Proceedings of the Society for General Microbiology Symposium 41, 'Ecology of Microbial Communities', vol. 41. Cambridge University Press, pp. 387-425.
67. Tett, P., 1990. A Three Layer Vertical and Microbiological Processes Model for Shelf Seas. Report No. 14. Proudman Oceanographic Laboratory, Birkenhead, p. 85.
68. Thingstad T.F. Utilization of N, P, and organic C by heterotrophic bacteria. I Outline of a chemostat theory with a consistent concept of 'maintenance' metabolism. Marine Ecology Progress Series 1987, 35(1-2):99-109.
69. Torréton J.-P., Rochelle-Newall E., Pringault O., Jacquet S., Faure V., Briand E. Variability of primary and bacterial production in a coral reef lagoon (New Caledonia). Marine Pollution Bulletin 2010, 61:335-348.
70. Weisse T. The microbial loop in the Red Sea: dynamics of pelagic bacteria and heterotrophic nanoflagellates. Marine Ecology Progress Series 1989, 55(2-3):241-250.
71. Williams P.B. Heterotrophic bacteria and the dynamics of dissolved organic material. Microbial Ecology of the Oceans 2000, 153-200. Wiley-Liss, New York. D.L. Kirchman (Ed.).
72. Wommack K.E., Colwell R.R. Virioplankton: viruses in aquatic ecosystems. Microbiology and Molecular Biology Review 2000, 64:69-114.
73. Zetina-Rejon M.J., Arreguin-Sanchez F., Chavez E.A. Trophic structure and flows of energy in the Huizache-Caimanero lagoon complex on the Pacific coast of Mexico. Estuarine Coastal and Shelf Science 2003, 57(5-6):803-815.