The use of oxygen microprobes to measure bacterial respiration for determining bacterioplankton growth efficiency

Limnology and Oceanography: Methods

Volumn 2, Issue 12, 2004, Pages 406-416

  Briand, Enora ^a,b   Pringault, Olivier ^a   Jacquet, Séverine ^a   Torréton, Jean Pascal ^a  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (New Caledonia)

^b Centre IRD de Bel Air   (Senegal)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 31544470914     PISSN: None     EISSN: 15415856     Source Type: Journal    
DOI: 10.4319/lom.2004.2.406     Document Type: Article

References (49)

1. Amon, R. M. W., and R. Benner. 1996. Bacterial utilization of different size classes of dissolved organic matter. Limnol. Oceanogr. 41:41-51
2. Barillier, A., and J. Garnier. 1993. Influence of temperature and substrate concentration on bacterial growth yield in Seine River water batch cultures. Appl. Environ. Microbiol. 59: 1678-1682
3. Biddanda, B., S. Opsahl, and R. Benner. 1994. Plankton respiration and carbon flux through bacterioplankton on the Louisiana shelf. Limnol. Oceanogr. 39:1259-1275
4. Bjornsen, P. K. 1986. Bacterioplankton growth yield in continuous seawater cultures. Mar. Ecol. Prog. Ser. 30:191-196
5. Bouvier, T. C., and P. A. del Giorgio. 2002. Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol. Oceanogr. 47:453-470
6. Carlson, C. A., and H. W. Ducklow. 1996. Growth of bacterioplankton and consumption of dissolved organic carbon in the Sargasso Sea. Aquat. Microb. Ecol. 10:69-85
7. Cho, B. C., and F. Azam. 1988. Major role of bacteria in biogeochemical fluxes in the ocean's interior. Nature 332:441-443
8. Coffin, R., J. Connolly, and P. S. Harris. 1993. Availability of dissolved organic carbon to bacterioplankton examined by oxygen utilization. Mar. Ecol. Prog. Ser. 101:9-22
9. Cowie, G., and D. J. Lloyd. 1999. Membrane inlet ion trap mass spectrometry for the direct measurement of dissolved gas in ecological samples. J. Microbiol. Meth. 35:1-12
10. Daneri, G., B. Riemann, and P. J. L. Williams. 1994. In situ bacterial production and growth yield measured by thymidine, leucine and fractionated dark oxygen uptake. J. Plankt. Res. 16:105-113
11. del Giorgio, P. A., and T. C. Bouvier. 2002. Linking the physiologic and phylogenetic successions in free-living bacterial communities along an estuarine salinity gradient. Limnol. Oceanogr. 47:471-486
12. J. J. Cole. 1998. Bacterial growth efficiency in natural aquatic systems. Annu. Rev. Ecol. Syst. 29:503-541
13. Douillet, P. 1998. Tidal dynamics of the south-west lagoon of New-Caledonia: observations and 2D numerical modeling. Oceanologica Acta 21:69-79
14. Ducklow, H. W., and C. A. Carlson. 1992. Oceanic bacterial production. Adv. Microb. Ecol. 12:113-181
15. Fuchs, B. M., M. V. Zubkov, K. Sahm, P. H. Burkill, and R. Amann. 2000. Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques. Environ. Microbiol. 2:191-201
16. Fuhrman, J. A. 1992. Bacterioplankton role in cycling of organic matter: the microbial food web, p. 361-383. In: P. G. Falkowski and A. D. Woodhead [eds.], Primary productivity and biogeochemical cycles in the sea. Plenum Press, New York.
17. Fukuda, R., H. Ogawa, T. Nagata, I. Koike. 1998. Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments. Appl. Environ. Microbiol. 64:3352-3358
18. Gattuso, J. P., S. Peduzzi, M. D. Pizay, and M. Tonolla. 2002. Changes in freshwater bacterial community composition during measurements of microbial and community respiration. J. Plankt. Res. 24:1197-1206
19. Griffith, P. C. 1988. A high-precision respirometer for measuring small rates of change in the oxygen concentration of natural waters. Limnol. Oceanogr. 33:632-638
20. D. J. Douglas, and S. C. Wainright. 1990. Metabolic activity of size-fractionated microbial plankton in estuarine, nearshore and continental shelf waters of Georgia. Mar. Ecol. Prog. Ser. 59:263-270
21. Hobbie, J. E., and C. C. Crawford. 1969. Respiration corrections for bacterial uptake of dissolved organic compounds in natural waters. Limnol. Oceanogr. 14:528-532
22. Jeffrey, S. W., and G. F. Humphrey. 1975. New spectrophotometric equations for determining chlorophylls a, b, c1 and c2 in algae, phytoplankton and higher plants. Biochem. Physiol. Pflanz. 167:191-194
23. Jorgensen, N. O. G., N. Kroer, and R. B. Coffin.1994. Utilization of dissolved nitrogen by heterotrophic bacterioplankton: effect of substrate C/N ratio. Appl. Environ. Microbiol. 60:4124-4133.
24. Kana, T., C. Darkangelo, M. D. Hunt, J. B. Oldham, G. E. Bennett, and J. C. Cornwell. 1994. Membrane inlet mass spectrometer for rapid high-precision determination of N2, O2, and Ar in environmental water samples. Anal. Chem. 66:4166-4170
25. Kirchman, D. L., J. Sigda, R. Kapuscinski, and R. Mitchell. 1982. Statistical analysis of the direct count method for enumerating bacteria. Appl. Environ. Microbiol. 44:376-382
26. Kroer, N. 1993. Bacterial growth efficiency on natural dissolved organic matter. Limnol. Oceanogr. 38:1282-1290
27. Langdon, C. 1993. Community respiration measurements using a pulsed O2 electrode, p. 447-453. In: P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole [eds.], Handbook of methods in aquatic microbial ecology, Lewis Publisher
28. Lee, S., and J. A. Furhman. 1987. Relationship between biovolume and biomass of naturally derived marine bacterioplankton. Appl. Environ. Microbiol. 53:1298-1303.
29. Lemarchand, K., N. Parthuisot, P. Catala, and P. Lebaron. 2001. Comparative assessment of epifluorescence microscopy, flow cytometry and solid-phase cytometry used in the enumeration of specific bacteria in water. Aquat. Microb. Ecol. 25:301-309
30. Lemée, R., E. Rochelle-Newall, F. Van Wambeke, M. D. Pizay, P. Rinaldi, and J. P. Gattuso. 2002. Seasonal variation of bacterial production, respiration and growth efficiency in the open NW Mediterranean Sea. Aquat. Microb. Ecol. 29:227-237
31. Lorenzen, C. J. 1966. A method for the continuous measurement of in vivo chlorophyll concentration. Deep-Sea Res. 13:223-227
32. Massana, R., C. Pedros-Alio, E. O. Casamayor, and J. M. Gasol. 2001. Changes in marine bacterioplankton phylogenetic composition during incubations designed to measure biogeochemically significant parameters. Limnol. Oceanogr. 46:1181-1188
33. Middelboe, M., and M. Sondergaard. 1993. Bacterioplankton growth yield: seasonal variations and coupling to substrate lability and ß-glucosidase activity. Appl. Environ. Microbiol. 59:3916-3921
34. B. Nielsen, and M. Sondergaard. 1992. Bacterial utilization of dissolved organic carbon (DOC) in coastal waters-determination of growth yield. Arch. Hydrobiol. Ergebn. Limnol. 37:51-61
35. Pomeroy, L. R., W. J. Wiebe, D. Deibel, R. J. Thompon, G. T. Rowe, and J. D. Pakulski. 1991. Bacterial responses to temperature and substrate concentration during the Newfoundland spring bloom. Mar. Ecol. Prog. Ser. 75:143-159
36. J. E. Sheldon, and W. M. Sheldon. 1994. Changes in bacterial numbers and leucine assimilation during estimations of microbial respiratory rates in seawater by the precision Winkler method. Appl. Environ. Microbiol. 60: 328-332
37. J. E. Sheldon, W. M. Sheldon, and F. Peters. 1995. Limits to growth and respiration of bacterioplankton in the Gulf of Mexico. Mar. Ecol. Prog. Ser. 117:259-268
38. Pradeep Ram, A. S., S. Nair, D. Chandramohan. 2003. Bacterial growth efficiency in the tropical estuarine and coastal waters of Goa, southwest coast of India. Microb. Ecol. 45: 88-96
39. Revsbech, N. P. 1989. An oxygen microsensor with a guard cathode. Limnol. Oceanogr. 34:472-476
40. Roland, F., N. F. Caraco, and J. J. Cole. 1999. Rapid and precise determination of dissolved oxygen by spectrophotometry: Evaluation of interference from color and turbidity. Limnol. Oceanogr. 44:1148-1154
41. Schäfer, H., P. Servais, and G. Muyzer. 2000. Successional changes in the genetic diversity of a marine bacterial assemblage during confinement. Arch. Microbiol. 173:138-145
42. Sherr, B. F., and E. B. Sherr. 2003. Community respiration/ production and bacterial activity in the upper water column of the central Arctic Ocean. Deep-Sea Res. PART 1 50:529-542
43. Smith, E. M., and Y. T. Prairie. 2004. Bacterial metabolism and growth efficiency in lakes: The importance of phosphorus availability. Limnol. Oceanogr. 49:137-147
44. Taylor, G. T., J. Way, and M. Scranton. 2003. Planktonic carbon cycling and transport in surface waters of the highly urbanized Hudson river estuary. Limnol. Oceanogr. 48: 1779-1795
45. Troussellier, M., C. Courties, P. Lebaron, and P. Servais. 1999. Flow cytometric discrimination of bacterial populations in seawater based on SYTO 13 staining of nucleic acids. FEMS Microbiol. Ecol. 29:319-330
46. Tulonen, T, Salonen K, Arvola L. 1992. Effects of different molecular weight fractions of dissolved organic matter on the growth of bacteria, algae and protozoa from a highly humic lake. Hydrobiologia 229:239-252
47. Yentsch, C. S., and D. W. Menzel. 1963. A method for the determination of phytoplankton chlorophyll and pheophytin by fluorescence. Deep-Sea Res. 10:221-231
48. Zweifel, U. L., B. Norrman, and A. Hagström. 1993. Consumption of dissolved organic carbon by marine bacteria and demand for inorganic nutrients. Mar. Ecol. Prog. Ser. 101: 23-32
49. Zubkov, M. V., B. M. Fuchs, H. Eilers, P. H. Burkill, and R. Amann. 1999. Determination of total protein content of bacterial cells by SYPRO staining and flow cytometry. Appl. Environ. Microbiol. 65:3251-3257