Multiple cryptic genetic units in Hypothenemus hampei (Coleoptera: Scolytinae): Evidence from microsatellite and mitochondrial DNA sequence data

Biological Journal of the Linnean Society

Volumn 101, Issue 1, 2010, Pages 113-129

  Gauthier, Nathalie ^a  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

Bayesian analysis; Coffee pest; Genetic structure; Molecular phylogenetics; Pest management; Population differentiation

Indexed keywords

BAYESIAN ANALYSIS; BEETLE; CLUSTER ANALYSIS; COFFEE; CRYPSIS; CYTOCHROME; EVOLUTIONARY BIOLOGY; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC STRUCTURE; MITOCHONDRIAL DNA; PEST CONTROL; PHYLOGENETICS;

ASIA; JAMAICA; WEST AFRICA;

COLEOPTERA; HEXAPODA; HYPOTHENEMUS HAMPEI; SCOLYTINAE;

EID: 77955955068     PISSN: 00244066     EISSN: 10958312     Source Type: Journal    
DOI: 10.1111/j.1095-8312.2010.01483.x     Document Type: Article

References (58)

1. Andreev D, Breilid H, Kirkendall L, Brun LO, Ffrench-Constant RH. Lack of nucleotide variability in a beetle pest with extreme breeding. Insect Molecular Biology 1998, 7:197-200.
2. Anthony F, Combes MC, Astorga C, Bertrand B, Graziosi G, Lashermes P. The origin of cultivated Coffea arabica L. varieties revealed by AFLP and SSR markers. Theoretical and Applied Genetics 2002, 104:894-900.
3. Avise JC. Phylogeography. The history and formation of species 2000, Cambridge, MA, Harvard University Press
4. Balloux F, Lugon-Moulin N. The estimation of population differentiation with microsatellite markers. Molecular Ecology 2002, 11:155-165.
5. Batley J, Edwars KJ, Barker JHA, Dawson KJ, Wiltshire CW, Glen DM, Karp A. Population structure of the beetle pests Phyllopecta vulgatissima and P. vitellinae on UK willow plantations. Insect Molecular Biology 2004, 13:413-421.
6. Belkir K, Borsa P, Chikhi L, Goudet J, Bonhomme F. Genetix 4.01, Logiciel Sous Windows™ pour la Génétique des Populations. 2000, Laboratoire Génome et Populations, CNRS UPR 9060, Université de Montpellier II, Montpellier, France
7. Benavides P, Vega FE, Romero-Severson J, Bustillo AE, Stuart JJ. Biodiversity and biogeography of an important inbred pest of Coffee, Coffee Berry Borer (Coleoptera: Curculionidae: Scolytinae). Annals of the Entomological Society of America 2005, 98:359-366.
8. Bickford D, Lohman DJ, Sodhi NS, Ng PKL, Meier R, Winker K, Ingram KK, Das I. Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution 2006, 22:148-155.
9. Blair CP, Abrahamson WG, Jackman JA, Tyrrell L. Cryptic speciation and host-race formation in a purportedly generalist tumbling flower beetle. Evolution 2005, 59:304-316.
10. Borsa P, Gingerich DP. Allozyme variation and an estimate of the inbreeding coefficient in the Coffee Berry Borer, Hypothenemus hampei. Bulletin of Entomological Research 1995, 85:21-28.
11. Brouat C, Sennedot F, Audiot P, Leblois R, Rasplus J-Y. Fine-scale genetic structure of two carabid species with contrasted levels of habitat specialization. Molecular Ecology 2003, 12:1731-1745.
12. Brown JK. Tracing the origin of cryptic insect pests and vectors, and their natural enemies. Genetics, evolution and biological control 2004, 113-135. Ehler LESforza RMateille T. eds., Oxford, CABI Publishing
13. Brun LO, Stuart J, Gaudichon V, Aronstein K, Ffrench-Constant RH. Functional haplodiploidy: a mechanism for the spread of insecticide resistance in an important international insect pest. Proceedings of the National Academy of Sciences of the United States of America 1995, 92:9861-9865.
14. Chapuis M, Estoup A. Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution 2007, 24:621-631.
15. Cognato AI. Standard percent DNA sequence difference for insects does not predict species boundaries. Journal of Economic Entomology 2006, 99:1037-1045.
16. Cognato AI, Gillette NE, Bolanos RC, Sperling FAH. Mitochondrial phylogeny of pine cone beetles (Scolytinae, Conophthorus) and their affiliation with geographic area and host. Molecular Phylogenetics and Evolution 2005, 36:494-508.
17. Cognato AI, Harlin AD, Fisher ML. Genetic structure among Pinyon beetle populations (Scolytinae: Ips confusus). Environmental Entomology 2003, 32:1262-1270.
18. Cognato AI, Sperling FAH. Phylogeny of Ips DeGeer species (Coleoptera: Scolytidae) inferred from mitochondrial cytochrome oxydase I sequence. Molecular Phylogenetics and Evolution 2000, 14:445-460.
19. Damon A. A review of the biology and control of the coffee berry borer, Hypothenemus hampei (Coleoptera: Scolytidae). Bulletin of Entomological Research 2000, 90:453-465.
20. De la Rua P, Simon B, Cifuentes D, Martinez-Mora C, Cenis JL. New insights into the mitochondrial phylogeny of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) in the Mediterranean basin. Journal of Zoological Systematics and Evolutionary Research 2006, 44:25-33.
21. DeSalle R, Egan MG, Siddall M. The unholy trinity: taxonomy, species delimitation and DNA barcoding. Philosophical Transactions of the Royal Society of London Series B, Biological Sciences 2005, 360:1905-1916.
22. Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry Bulletin 1987, 19:11-15.
23. Falush D, Stephens M, Pritchard JK. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003, 164:1567-1587.
24. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 1981, 17:368-376.
25. Felsenstein J. Phylogeny inference package (PHYLIP) 1993, Version 3.5, Seattle, WA, University of Washington
26. Ferguson JWH. On the use of genetic divergence for identifying species. Biological Journal of the Linnean Society 2002, 75:509-516.
27. Fitch WM. Towards defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 1971, 20:406-416.
28. Gauthier N, Rasplus J-Y. Polymorphic microsatellite loci in the Coffee Berry Borer, Hypothenemus hampei (Coleoptera, Scolytidae). Molecular Ecology Notes 2004, 4:294-296.
29. Gingerich DP, Borsa PD, Suckling M, Brun LO. Inbreeding in the Coffee Berry Borer, Hypothenemus hampei (Coleoptera: Scolytidae) estimated from endosulfan resistance phenotype frequencies. Bulletin of Entomological Research 1996, 86:667-674.
30. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 2004, 101:14812-14817.
31. Hebert PDN, Ratnasingham S, DeWaard JR. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London Series B, Biological Sciences 2003, 270:S96-S99.
32. Hudson RR, Boos DD, Kaplan NL. A statistical test for detecting population subdivision. Molecular Ecology and Evolution 1992, 9:138-151.
33. Jordal BH, Kirkendall LR, Harkestead K. Phylogeny of a Macaronesian radiation: host plant use and possible cryptic specification in Liparthrum bark beetles. Molecular Phylogenetics and Evolution 2004, 31:554-271.
34. Jordal BH, Normark BB, Farrell BD, Kirkendall LR. Extraordinary haplotype diversity in haplodiploid inbreeders: phylogenetics and evolution of the bark beetle genus Coccotrypes. Molecular Phylogenetics and Evolution 2002, 23:171-188.
35. Kerdelhué C, Roux-Morabito G, Forichon J, Chambon JM, Robert A, Lieutier F. Population genetic structure of Tomicus piniperda L. (Curculionidae: Scolytinae) on different pine species and validation of T. destruens (Woll.). Molecular Ecology 2002, 11:483-494.
36. Le Pelley RH. Pests of coffee 1968, London, Longmans, Green & Co
37. Miura O. Molecular genetic approaches to elucidate the ecological and evolutionary issues associated with biological invasions. Ecological Research 2007, 22:876-883.
38. Molbo D, Machado CA, Sevenster JG, Keller L, Herre EA. Cryptic species of fig-pollinating wasps: implications for the evolution of the fig-wasp mutualism, sex allocation, and precision of adaptation. Proceedings of the National Academy of Sciences of the United States of America 2003, 100:5867-5872.
39. Mopper S. Adaptive genetic structure in phytophagous insect populations. Trends in Ecology and Evolution 1996, 11:235-238.
40. Murphy ST, Moore D. Biological control of the coffee berry borer, Hypothenemus hampei (Ferrari) (Coleoptera, Scolytidae): previous programmes and possibilities for the future. Biocontrol News and Information 1990, 11:107-117.
41. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
42. Posada D, Crandall KA. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
43. Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
44. Raymond M, Rousset F. Genepop (version 1.2). Population genetics software for exact test and ecumenicism. Journal of Heredity 1995, 86:248-249.
45. Roderick GK. Tracing the origin of pests and natural enemies: genetic and statistical approaches. Genetics, evolution and biological control 2004, 97-112. Ehler LESforza RMateille T. eds., Oxon, CABI Publishing
46. Rossman AY, Miller DR. Systematics solves problems in agriculture and forestry. Annals of the Missouri Botanical Garden 1996, 83:17-28.
47. Rozas J, Sanchez-Delbarrio JC, Messeguer X, Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19:2496-2497.
48. Saitou N, Nei M. The neighbor-joining method- a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 1987, 4:406-425.
49. Sallé A, Arthofer W, Lieutier F, Stauffer C, Kerdelhué C. Phylogeography of a host-specific insect: genetic structure of Ips typographus in Europe does not reflect past fragmentation of its host. Biological Journal of the Linnean Society 2007, 90:239-246.
50. Scheffer S, Condon M, Flaherty K, Gammons J, Johnson J, Marsteller L, Dean L. Uncovering tropical diversity: six sympatric cryptic species of Blepharoneura (Diptera: Tephritidae) in flowers of Gurania spinulosa (Cucurbitacea) in eastern Ecuador. Biological Journal of the Linnean Society 2008, 93:779-797.
51. Stireman JO, Nason JD, Heard SB. Host-associated genetic differentiation in phytophagous insects. General phenomenom or isolated exceptions? Evidence from a goldenrod-insect community. Evolution 2005, 59:2573-2587.
52. Streiff R, Veyrier P, Audiot P, Meusnier S, Brouat C. Introgression in natural populations of bioindicators: a case study of Carabus splendens and Carabus punctatoauratus. Molecular Ecology 2005, 14:3775-3786.
53. Swofford DL. PAUP*: phylogenetic analysis using parsimony (* and other methods) 2002, Sunderland, MA, Sinauer Associates, Inc
54. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123:585-595.
55. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P. Microchecker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 2004, 4:535-538.
56. Weir BS. Genetic Data Analysis II 1996, Sunderland, MA, Sinauer
57. Wharton RA, Wolley JB, Rose M. Relationship and importance of taxonomy to classical biological control. Classical biological control in the Southern United States, Southern Cooperative Services Bulletin 1990, 11-15. Habeck DH, Bennett FD, Frank JH. eds., No. 335, Gainesville, FL, IFAS Editorial
58. Wood SL. The bark and ambrosia beetles of North and Central America (Coleoptera: Scolytidae), a taxonomic monograph. Great Basin Naturalist Memoirs 1982, 6:1-1359.