-
1
-
-
76649102389
-
Rapid identification of Legionella species by mass spectrometry
-
10.1099/jmm.0.014100-0, 19926729
-
Moliner C, Ginevra C, Jarraud S, Flaudrops C, Bedotto M, Couderc C, Etienne J, Fournier P. Rapid identification of Legionella species by mass spectrometry. J Med Microbiol 2010, 59:273-84. 10.1099/jmm.0.014100-0, 19926729.
-
(2010)
J Med Microbiol
, vol.59
, pp. 273-284
-
-
Moliner, C.1
Ginevra, C.2
Jarraud, S.3
Flaudrops, C.4
Bedotto, M.5
Couderc, C.6
Etienne, J.7
Fournier, P.8
-
2
-
-
50849133873
-
Challenging the problem of clostridial identification with matrix-assisted laser desorption and ionization-time-of-flight mass spectrometry (MALDI-TOF MS)
-
Thomas M, Frank G, Reiner S, Helge B, Markus K, Monika K. Challenging the problem of clostridial identification with matrix-assisted laser desorption and ionization-time-of-flight mass spectrometry (MALDI-TOF MS). Anaerobe 2008, 14:1075-9964.
-
(2008)
Anaerobe
, vol.14
, pp. 1075-9964
-
-
Thomas, M.1
Frank, G.2
Reiner, S.3
Helge, B.4
Markus, K.5
Monika, K.6
-
3
-
-
39049175370
-
Protein identification by tandem mass spectrometry and sequence database searching
-
Nesvizhskii A. Protein identification by tandem mass spectrometry and sequence database searching. Methods Mol Biol 2007, 367:87-119.
-
(2007)
Methods Mol Biol
, vol.367
, pp. 87-119
-
-
Nesvizhskii, A.1
-
4
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng J, McCormack A, Yates JI. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 1994, 5:976-989.
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.1
McCormack, A.2
Yates, J.I.3
-
5
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins D, Pappin D, Creasy D, Cottrell J. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20:3351-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3351-3567
-
-
Perkins, D.1
Pappin, D.2
Creasy, D.3
Cottrell, J.4
-
6
-
-
3142702204
-
TANDEM: matching proteins with tandem mass spectra
-
10.1093/bioinformatics/bth092, 14976030
-
Craig R, Beavis R. TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20:1466-1467. 10.1093/bioinformatics/bth092, 14976030.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.2
-
7
-
-
58149156457
-
Salivary proteomics for oral cancer biomarker discovery
-
10.1158/1078-0432.CCR-07-5037, 2877125, 18829504
-
Hu S, Arellano M, Boontheung P, Wang J, Zhou H, Jiang J, Elashoff D, Wei R, Loo J, Wong D. Salivary proteomics for oral cancer biomarker discovery. Clin Cancer Res 2008, 14(19):6246-52. 10.1158/1078-0432.CCR-07-5037, 2877125, 18829504.
-
(2008)
Clin Cancer Res
, vol.14
, Issue.19
, pp. 6246-6252
-
-
Hu, S.1
Arellano, M.2
Boontheung, P.3
Wang, J.4
Zhou, H.5
Jiang, J.6
Elashoff, D.7
Wei, R.8
Loo, J.9
Wong, D.10
-
8
-
-
33747432967
-
Identification of biomarkers from mass spectrometry data using a 'common' peak approach
-
10.1186/1471-2105-7-358, 1550264, 16869977
-
Fushiki T, Fujisawa H, Eguchi S. Identification of biomarkers from mass spectrometry data using a 'common' peak approach. BMC Bioinformatics 2006, 7:358. 10.1186/1471-2105-7-358, 1550264, 16869977.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 358
-
-
Fushiki, T.1
Fujisawa, H.2
Eguchi, S.3
-
9
-
-
19544394460
-
Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data
-
10.1093/bioinformatics/bti370, 15784749
-
Yu J, Ongarello S, Fiedler R, Chen X, Toffolo G, Cobelli C, Trajanoski Z. Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data. Bioinformatics 2005, 21:2200-2209. 10.1093/bioinformatics/bti370, 15784749.
-
(2005)
Bioinformatics
, vol.21
, pp. 2200-2209
-
-
Yu, J.1
Ongarello, S.2
Fiedler, R.3
Chen, X.4
Toffolo, G.5
Cobelli, C.6
Trajanoski, Z.7
-
10
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S, Gish W, Miller W, Myers E, Lipman D. Basic local alignment search tool. Journal of Mol Bio 1990, 215:403-10.
-
(1990)
Journal of Mol Bio
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
11
-
-
15744400109
-
Comparison of Different Search Engines Using Validated MS/MS Test Datasets
-
Boutilier K, Ross M, Podtelejnikov A, Orsi C, Taylor R, Taylor P, Figeys D. Comparison of Different Search Engines Using Validated MS/MS Test Datasets. Analytica Chimica Acta 2004, 534:11-20.
-
(2004)
Analytica Chimica Acta
, vol.534
, pp. 11-20
-
-
Boutilier, K.1
Ross, M.2
Podtelejnikov, A.3
Orsi, C.4
Taylor, R.5
Taylor, P.6
Figeys, D.7
-
12
-
-
23944451618
-
An evaluation and comparison and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis
-
10.1002/pmic.200500126, 16047398
-
Kapp E, Schutz F, Connolly L, Chakel J, Meza J, Miller C, Fenyo D, Eng J, Adkins J, Omenn G, Simpson R. An evaluation and comparison and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis. Proteomics 2005, 5(13):3475-90. 10.1002/pmic.200500126, 16047398.
-
(2005)
Proteomics
, vol.5
, Issue.13
, pp. 3475-3490
-
-
Kapp, E.1
Schutz, F.2
Connolly, L.3
Chakel, J.4
Meza, J.5
Miller, C.6
Fenyo, D.7
Eng, J.8
Adkins, J.9
Omenn, G.10
Simpson, R.11
-
13
-
-
43849101253
-
Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold
-
Brosch M, Swamy S, Hubbard T, Choudhary J. Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold. Molecular & cellular proteomics 2008, 7(5):962-70.
-
(2008)
Molecular & cellular proteomics
, vol.7
, Issue.5
, pp. 962-970
-
-
Brosch, M.1
Swamy, S.2
Hubbard, T.3
Choudhary, J.4
-
14
-
-
75649142942
-
Optimization of the use of consensus methods for the detection and putative identification of peptides via mass spectrometry using protein standard mixtures
-
10.4172/jpb.1000085, 2749508, 19779596
-
Sultana T, Jordan R, Lyons-Weiler J. Optimization of the use of consensus methods for the detection and putative identification of peptides via mass spectrometry using protein standard mixtures. J Proteomics Bioinform 2009, 2(6):262-273. 10.4172/jpb.1000085, 2749508, 19779596.
-
(2009)
J Proteomics Bioinform
, vol.2
, Issue.6
, pp. 262-273
-
-
Sultana, T.1
Jordan, R.2
Lyons-Weiler, J.3
-
15
-
-
33846598840
-
Genetic Diversity among Botulinum Neurotoxin-Producing Clostridial Strains
-
Hill K, Smith T, Helma C, Ticknor L, Foley B, Svensson R, Brown J, Johnson E, Smith L, Okinaka R, Jackson P, Marks J. Genetic Diversity among Botulinum Neurotoxin-Producing Clostridial Strains. Bacteriol 2007, 189(3):818-832.
-
(2007)
Bacteriol
, vol.189
, Issue.3
, pp. 818-832
-
-
Hill, K.1
Smith, T.2
Helma, C.3
Ticknor, L.4
Foley, B.5
Svensson, R.6
Brown, J.7
Johnson, E.8
Smith, L.9
Okinaka, R.10
Jackson, P.11
Marks, J.12
-
16
-
-
7044272787
-
Potential for false positive identifications from large databases through tandem mass spectrometry
-
10.1021/pr049946o, 15473699
-
Cargile B, Bundy J, Stephenson JJ. Potential for false positive identifications from large databases through tandem mass spectrometry. J Proteome Res 2004, 3(5):1082-5. 10.1021/pr049946o, 15473699.
-
(2004)
J Proteome Res
, vol.3
, Issue.5
, pp. 1082-1085
-
-
Cargile, B.1
Bundy, J.2
Stephenson, J.J.3
-
17
-
-
34848819400
-
Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy
-
10.1074/mcp.M600469-MCP200, 17533222
-
Balgley B, Laudeman T, Yang L, Song T, Lee C. Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy. Mol Cell Proteomics 2007, 6(9):1599-608. 10.1074/mcp.M600469-MCP200, 17533222.
-
(2007)
Mol Cell Proteomics
, vol.6
, Issue.9
, pp. 1599-1608
-
-
Balgley, B.1
Laudeman, T.2
Yang, L.3
Song, T.4
Lee, C.5
-
18
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias J, Gygi S. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nature Methods 2007, 4:2107-214.
-
(2007)
Nature Methods
, vol.4
, pp. 2107-2214
-
-
Elias, J.1
Gygi, S.2
-
19
-
-
0029889221
-
Local alignment statistics
-
full_text, 8743700
-
Altschul S, Gish W. Local alignment statistics. Methods in Enzymology 1996, 266:460-80. full_text, 8743700.
-
(1996)
Methods in Enzymology
, vol.266
, pp. 460-480
-
-
Altschul, S.1
Gish, W.2
-
20
-
-
84874660763
-
Swiss Prot Protein Database
-
Swiss Prot Protein Database. , http://us.expasy.org/sprot/
-
-
-
-
21
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
10.1093/nar/gkm321, 1933193, 17526522
-
Moriya Y, Itoh M, Okuda S, Yoshizawa A, Kanehisa M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res 2007, 35:W182-5. 10.1093/nar/gkm321, 1933193, 17526522.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.4
Kanehisa, M.5
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