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Volumn 4, Issue , 2010, Pages

A quantitative approach to study indirect effects among disease proteins in the human protein interaction network

Author keywords

[No Author keywords available]

Indexed keywords

IPS;

EID: 77955941577     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-4-103     Document Type: Article
Times cited : (17)

References (38)
  • 1
    • 49049085372 scopus 로고    scopus 로고
    • Genes and disease
    • National Library of Medicine (US), NCBI, NCBI
    • NCBI Genes and disease. 2007, National Library of Medicine (US), NCBI, NCBI.
    • (2007)
  • 2
    • 1542787787 scopus 로고    scopus 로고
    • Pocus: mining genomic sequence annotation to predict disease genes
    • 329128, 14611661
    • Turner FS, Clutterbuck DR, Semple CAM. Pocus: mining genomic sequence annotation to predict disease genes. Genome Biology 2003, 4(R75). 329128, 14611661.
    • (2003) Genome Biology , vol.4 , Issue.75
    • Turner, F.S.1    Clutterbuck, D.R.2    Semple, C.A.M.3
  • 3
    • 25444482801 scopus 로고    scopus 로고
    • Speeding disease gene discovery by sequence based candidate prioritization
    • 10.1186/1471-2105-6-55, 1274252, 15766383
    • Adie EJ, Adams RR, Evans KL, Porteous DJ, Pickard BS. Speeding disease gene discovery by sequence based candidate prioritization. BMC Bioinformatics 2005, 6:55. 10.1186/1471-2105-6-55, 1274252, 15766383.
    • (2005) BMC Bioinformatics , vol.6 , pp. 55
    • Adie, E.J.1    Adams, R.R.2    Evans, K.L.3    Porteous, D.J.4    Pickard, B.S.5
  • 5
    • 23044496736 scopus 로고    scopus 로고
    • Protein-protein interactions in human disease
    • 10.1016/j.sbi.2005.06.001, 15993577
    • Ryan DP, Matthews JM. Protein-protein interactions in human disease. Curr Opin Struct Biol 2005, 15(4):441-446. 10.1016/j.sbi.2005.06.001, 15993577.
    • (2005) Curr Opin Struct Biol , vol.15 , Issue.4 , pp. 441-446
    • Ryan, D.P.1    Matthews, J.M.2
  • 6
    • 33751017706 scopus 로고    scopus 로고
    • Discovering disease-genes by topological features in human protein-protein interaction network
    • 10.1093/bioinformatics/btl467, 16954137
    • Xu J, Li Y. Discovering disease-genes by topological features in human protein-protein interaction network. Bioinformatics 2006, 22:2800-2805. 10.1093/bioinformatics/btl467, 16954137.
    • (2006) Bioinformatics , vol.22 , pp. 2800-2805
    • Xu, J.1    Li, Y.2
  • 8
    • 38449122174 scopus 로고    scopus 로고
    • Graph kernels for disease outcome prediction from protein-protein interaction networks
    • Borgwardt KM, Kriegel H. Graph kernels for disease outcome prediction from protein-protein interaction networks. Pacific Symposium on Biocomputing 2007, 12:4-15.
    • (2007) Pacific Symposium on Biocomputing , vol.12 , pp. 4-15
    • Borgwardt, K.M.1    Kriegel, H.2
  • 10
    • 39049189899 scopus 로고    scopus 로고
    • Mining Alzheimer disease relevant proteins from integrated protein interactome data
    • Chen JY, Shen C, Sivachenko AY. Mining Alzheimer disease relevant proteins from integrated protein interactome data. Pacific Symposium on Biocomputing 2006, 11:367-378.
    • (2006) Pacific Symposium on Biocomputing , vol.11 , pp. 367-378
    • Chen, J.Y.1    Shen, C.2    Sivachenko, A.Y.3
  • 11
    • 6344229209 scopus 로고    scopus 로고
    • Molecular triangulation: Bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease
    • 10.1073/pnas.0404315101, 523448, 15471992
    • Krauthammer M, Kaufmann CA, Gilliam TC, Rzhetsky A. Molecular triangulation: Bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease. PNAS 2004, 101:15148-15153. 10.1073/pnas.0404315101, 523448, 15471992.
    • (2004) PNAS , vol.101 , pp. 15148-15153
    • Krauthammer, M.1    Kaufmann, C.A.2    Gilliam, T.C.3    Rzhetsky, A.4
  • 12
    • 36349010138 scopus 로고    scopus 로고
    • Protein interactions and disease: computational approaches to uncover the etiology of diseases
    • 10.1093/bib/bbm031, 17638813
    • Kann MG. Protein interactions and disease: computational approaches to uncover the etiology of diseases. Brief Bioinform 2007, 8:333-346. 10.1093/bib/bbm031, 17638813.
    • (2007) Brief Bioinform , vol.8 , pp. 333-346
    • Kann, M.G.1
  • 13
    • 41649119247 scopus 로고    scopus 로고
    • Protein networks in disease
    • 10.1101/gr.071852.107, 18381899
    • Ideker T, Sharan R. Protein networks in disease. Genome Res 2008, 18:644-652. 10.1101/gr.071852.107, 18381899.
    • (2008) Genome Res , vol.18 , pp. 644-652
    • Ideker, T.1    Sharan, R.2
  • 14
    • 58149186419 scopus 로고    scopus 로고
    • Communicability betweenness in complex networks
    • Estrada E, Higham DJ, Hatano N. Communicability betweenness in complex networks. Physica A 2009, 388:764-774.
    • (2009) Physica A , vol.388 , pp. 764-774
    • Estrada, E.1    Higham, D.J.2    Hatano, N.3
  • 15
    • 65549138481 scopus 로고    scopus 로고
    • Identifying disease-specific genes based on their topological significance in protein networks
    • 10.1186/1752-0509-3-36, 2678983, 19309513
    • Dezsõ Z, Nikolsky Y, Nikolskaya T, Miller J, Cherba D, Webb C, Bugrim A. Identifying disease-specific genes based on their topological significance in protein networks. BMC Systems Biology 2009, 3:36. 10.1186/1752-0509-3-36, 2678983, 19309513.
    • (2009) BMC Systems Biology , vol.3 , pp. 36
    • Dezsõ, Z.1    Nikolsky, Y.2    Nikolskaya, T.3    Miller, J.4    Cherba, D.5    Webb, C.6    Bugrim, A.7
  • 17
    • 0041567067 scopus 로고    scopus 로고
    • Quantifying the importance of species and their interactions in a host-parasitoid community
    • Jordàn F, Liu WC, van Veen FJF. Quantifying the importance of species and their interactions in a host-parasitoid community. Community Ecology 2003, 4:79-88.
    • (2003) Community Ecology , vol.4 , pp. 79-88
    • Jordàn, F.1    Liu, W.C.2    van Veen, F.J.F.3
  • 18
  • 19
    • 34547140875 scopus 로고    scopus 로고
    • The human disease network
    • 10.1073/pnas.0701361104, 1885563, 17502601
    • Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabàsi AL. The human disease network. PNAS 2007, 104:8685-8690. 10.1073/pnas.0701361104, 1885563, 17502601.
    • (2007) PNAS , vol.104 , pp. 8685-8690
    • Goh, K.I.1    Cusick, M.E.2    Valle, D.3    Childs, B.4    Vidal, M.5    Barabàsi, A.L.6
  • 20
    • 0035030510 scopus 로고    scopus 로고
    • SH3 domains: complexity in moderation
    • Mayer BJ. SH3 domains: complexity in moderation. J Cell Sci 2001, 114:1253-1263.
    • (2001) J Cell Sci , vol.114 , pp. 1253-1263
    • Mayer, B.J.1
  • 21
    • 0035575586 scopus 로고    scopus 로고
    • Sh2 domains, interaction modules and cellular wiring
    • 10.1016/S0962-8924(01)02154-7, 11719057
    • Pawson T, Gish GD, Nash P. Sh2 domains, interaction modules and cellular wiring. Trends in Cell Biology 2001, 11:504-511. 10.1016/S0962-8924(01)02154-7, 11719057.
    • (2001) Trends in Cell Biology , vol.11 , pp. 504-511
    • Pawson, T.1    Gish, G.D.2    Nash, P.3
  • 22
    • 33750456519 scopus 로고    scopus 로고
    • Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
    • 10.1016/j.cell.2006.09.026, 17081983
    • Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127:635-648. 10.1016/j.cell.2006.09.026, 17081983.
    • (2006) Cell , vol.127 , pp. 635-648
    • Olsen, J.V.1    Blagoev, B.2    Gnad, F.3    Macek, B.4    Kumar, C.5    Mortensen, P.6    Mann, M.7
  • 24
    • 0037057235 scopus 로고    scopus 로고
    • Synergistic polymorphisms of beta1- and alpha2C-adrenergic receptors and the risk of congestive heart failure
    • 10.1056/NEJMoa020803, 12374873
    • Small KM, Wagoner LE, Levin AM, Kardia SLR, Liggett SB. Synergistic polymorphisms of beta1- and alpha2C-adrenergic receptors and the risk of congestive heart failure. N Engl J Med 2002, 347:1135-1142. 10.1056/NEJMoa020803, 12374873.
    • (2002) N Engl J Med , vol.347 , pp. 1135-1142
    • Small, K.M.1    Wagoner, L.E.2    Levin, A.M.3    Kardia, S.L.R.4    Liggett, S.B.5
  • 26
    • 0031436966 scopus 로고    scopus 로고
    • Human beta-2 adrenoceptor gene polymorphisms are highly frequent in obesity and associate with altered adipocyte beta-2 adrenoceptor function
    • 10.1172/JCI119854, 508512, 9399946
    • Large V, Hellstrom L, Reynisdottir S, Lonnqvist F, Eriksson P, Lannfelt L, Arner P. Human beta-2 adrenoceptor gene polymorphisms are highly frequent in obesity and associate with altered adipocyte beta-2 adrenoceptor function. J Clin Invest 1997, 100:3005-3013. 10.1172/JCI119854, 508512, 9399946.
    • (1997) J Clin Invest , vol.100 , pp. 3005-3013
    • Large, V.1    Hellstrom, L.2    Reynisdottir, S.3    Lonnqvist, F.4    Eriksson, P.5    Lannfelt, L.6    Arner, P.7
  • 29
    • 18744376914 scopus 로고    scopus 로고
    • Online predicted human interaction database
    • 10.1093/bioinformatics/bti273, 15657099
    • Brown KR, Jurisica I. Online predicted human interaction database. Bioinformatics 2005, 21:2076-2082. 10.1093/bioinformatics/bti273, 15657099.
    • (2005) Bioinformatics , vol.21 , pp. 2076-2082
    • Brown, K.R.1    Jurisica, I.2
  • 32
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • 10.1038/35075138, 11333967
    • Jeong H, Mason SP, Barabàsi AL, Oltvai ZN. Lethality and centrality in protein networks. Nature 2001, 411:41-42. 10.1038/35075138, 11333967.
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabàsi, A.L.3    Oltvai, Z.N.4
  • 33
    • 34247563370 scopus 로고    scopus 로고
    • A network perspective on the topological importance of enzymes and their phylogenetic conservation
    • 10.1186/1471-2105-8-121, 1955749, 17425808
    • Liu WC, Lin WH, Davis AJ, Jordàn F, Yang HT, Hwang MJ. A network perspective on the topological importance of enzymes and their phylogenetic conservation. BMC Bioinformatics 2007, 8:121. 10.1186/1471-2105-8-121, 1955749, 17425808.
    • (2007) BMC Bioinformatics , vol.8 , pp. 121
    • Liu, W.C.1    Lin, W.H.2    Davis, A.J.3    Jordàn, F.4    Yang, H.T.5    Hwang, M.J.6
  • 34
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
    • 10.1371/journal.pcbi.0030059, 1853125,1853125, 17447836
    • Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M. The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 2007, 3(4):e59. 10.1371/journal.pcbi.0030059, 1853125,1853125, 17447836.
    • (2007) PLoS Comput Biol , vol.3 , Issue.4
    • Yu, H.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5
  • 35
    • 0003948494 scopus 로고
    • Social Network Analysis
    • Cambridge University Press, Cambridge
    • Wassermann S, Faust K. Social Network Analysis. 1994, Cambridge University Press, Cambridge.
    • (1994)
    • Wassermann, S.1    Faust, K.2
  • 36
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources
    • Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protoc 2009, 4:44-57.
    • (2009) Nature Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 37


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