Sensitive, semi-nested RT-PCR amplification of fusion gene sequences for the rapid detection and differentiation of Newcastle disease virus

Research in Veterinary Science

Volumn 89, Issue 2, 2010, Pages 282-289

  Zhang, Lei ^a   Pan, Zhiming ^a   Geng, Shizhong ^a   Chen, Xiang ^a   Hu, Shunlin ^a   Liu, Huimo ^a   Wu, Yantao ^a   Jiao, Xinan ^a   Liu, Xiufan ^a  

^a YANGZHOU UNIVERSITY   (China)

Author keywords

Fusion protein; Newcastle disease virus; Semi nested RT PCR

Indexed keywords

AMNION FLUID; ARTICLE; CHICKEN; CONTROLLED STUDY; EMBRYO; GENE FUSION; NEWCASTLE DISEASE PARAMYXOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLAQUE FORMING CELL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS ISOLATION; VIRUS STRAIN; VIRUS VIRULENCE;

ANIMALS; CHICK EMBRYO; CHICKENS; NEWCASTLE DISEASE; NEWCASTLE DISEASE VIRUS; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; VIRAL VACCINES;

NEWCASTLE DISEASE VIRUS;

EID: 77955926607     PISSN: 00345288     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.rvsc.2010.02.007     Document Type: Article

References (34)

1. Aldous E.W., Alexander D.J. Detection and differentiation of Newcastle disease virus (avian paramyxovirus type 1). Avian Pathology 2001, 30:117-128.
2. Aldous E.W., Collins M.S., McGoldrick A., Alexander D.J. Rapid pathotyping of Newcastle disease virus (NDV) using fluorogenic probes in a PCR assay. Veterinary Microbiology 2001, 80:201-212.
3. Alexander D.J. Newcastle disease diagnosis. Newcastle Disease 1988, 147-160. Kluwer Academic, Norwell, Massachusetts. D.J. Alexander (Ed.).
4. Collins M.S., Strong I., Alexander D.J. Pathogenicity and phylogenetic evaluation of the variant Newcastle disease viruses termed " pigeon PMV-1 viruses" based on the nucleotide sequence of the fusion protein gene. Archives of Virology 1996, 141:635-647.
5. Cui S.J., Fung Y.W., Lau L.T., Liu W.B., Wang Y.F., Tong G.Z., Chen J., Yu A.C. Detection of Newcastle disease virus using nucleic acid sequence-based amplification. Biologicals 2007, 35:13-18.
6. Djikeng A., Halpin R., Kuzmickas R., Depasse J., Feldblyum J., Sengamalay N., Afonso C., Zhang X., Anderson N.G., Ghedin E. Viral genome sequencing by random priming methods. BMC Genomics 2008, 9:5.
7. Ezema W.S., Okoye J.O., Nwanta J.A. LaSota vaccination may not protect against the lesions of velogenic Newcastle disease in chickens. Tropical Animal Health and Production 2008, 41:477-484.
8. Fuller C.M., Collins M.S., Alexander D.J. Development of a real-time reverse-transcription PCR for the detection and simultaneous pathotyping of Newcastle disease virus isolates using a novel probe. Archives of Virology 2009, 154:929-937.
9. Glickman R.L., Syddall R.J., Iorio R.M., Sheehan J.P., Bratt M.A. Quantitative basic residue requirements in the cleavage-activation site of the fusion glycoprotein as a determinant of virulence for Newcastle disease virus. The Journal of Virology 1988, 62:354-356.
10. Huang Z.H., Krishnamurthy S., Panda A., Samal S.K. Newcastle disease virus V protein is associated with viral pathogenesis and functions as an Alpha interferon antagonist. The Journal of Virology 2003, 77:8676-8685.
11. Kant A., Koch G., Van Roozelaar D.J., Balk F., Huurne A.T. Differentiation of virulent and non-virulent strains of Newcastle disease virus within 24 hours by polymerase chain reaction. Avian Pathology 1997, 26:837-849.
12. Kapczynski D.R., King D.J. Protection of chickens against overt clinical disease and determination of viral shedding following vaccination with commercially available Newcastle disease virus vaccines upon challenge with highly virulent virus from the California 2002 exotic Newcastle disease outbreak. Vaccine 2005, 23:3424-3433.
13. Kho C.L., Mohd-Azmi M.L., Arshad S.S., Yusoff K. Performance of an RT-nested PCR ELISA for detection of Newcastle disease virus. The Journal of Virological Methods 2000, 86:71-83.
14. Kim L.M., Suarez D.L., Afonso C.L. Detection of a broad range of class I and II Newcastle disease viruses using multiplex real-time reverse transcription polymerase chain reaction assay. Journal of Veterinary Diagnostic Investigation 2008, 20:414-425.
15. Lee T.C., Yusoff K., Nathan S., Tan W.S. Detection of virulent Newcastle disease virus using a phage-capturing dot blot assay. The Journal of Virological Methods 2006, 136:224-229.
16. Liu H., Wang Z., Wu Y., Sun C., Zheng D., Xu T., Li J. Molecular characterization and phylogenetic analysis of new Newcastle disease virus isolates from the mainland of China. Research in Veterinary Science 2008, 85:612-616.
17. Liu X., Wang X., Wu S., Hu S., Peng Y., Xue F., Liu X. Surveillance for avirulent Newcastle disease viruses in domestic ducks (Anas platyrhynchos and Cairina moschata) at live bird markets in Eastern China and characterization of the viruses isolated. Avian Pathology 2009, 38:377-391.
18. Lomniczi B., Wehmann E., Herczeg J., Ballagi-Pordany A., Kaleta E.F., Werner O., Meulemans G., Jorgensen P.H., Mante A.P., Gielkens A.L., Capua I., Damoser J. Newcastle disease outbreaks in recent years in western Europe were caused by an old (VI) and a novel genotype (VII). Archives of Virology 1998, 143:49-64.
19. Miller P.J., King D.J., Afonso C.L., Suarez D.L. Antigenic differences among Newcastle disease virus strains of different genotypes used in vaccine formulation affect viral shedding after a virulent challenge. Vaccine 2007, 25:7238-7246.
20. Miller P.J., Decanini E.L., Afonso C.L. Newcastle disease: evolution of genotypes and the related diagnostic challenges. Infection, Genetics and Evolution 2010, 10:26-35.
21. Nagai Y., Klenk H.D., Rott R. Proteolytic cleavage of the viral glycoproteins and its significance for the virulence of Newcastle disease virus. Virology 1976, 72:494-508.
22. Nakamura K., Ohtsu N., Nakamura T., Yamamoto Y., Yamada M., Mase M., Imai K. Pathologic and immunohistochemical studies of Newcastle disease (ND) in broiler chickens vaccinated with ND: severe nonpurulent encephalitis and necrotizing pancreatitis. Veterinary Pathology 2008, 45:928-933.
23. Office International des Epizooties (OIE) Manual of Standards for Diagnostic Tests and Vaccines for Terrestrial Animals 2008, Office of International des Epizooties, Paris, France. sixth ed.
24. Office International des Epizootes (OIE) Manual of diagnostic tests and vaccines for terrestrial animals: mammals, birds and bees. Biological Standards Commission 2009, 576-589. World Organization for Animal Health, Paris.
25. Seal B.S., King D.J., Bennett J.D. Characterization of Newcastle disease virus isolates by reverse transcription PCR coupled to direct nucleotide sequencing and development of sequence database for pathotype prediction and molecular epidemiological analysis. Journal of Clinical Microbiology 1995, 33:2624-2630.
26. Shan S.H., Shao C.H., Xu C.Z., Zou J., Hu Y.Q., Wu J.H., Gong Z.X. Differentiation of velogenic, mesogenic and lentogenic strains of Newcastle disease virus by multiple RT-PCR. Annals of Applied Biology 2003, 142:49-54.
27. Tan L.T., Xu H.Y., Wang Y.L., Qin Z.M., Sun L., Liu W.J., Cui Z.Z. Molecular characterization of three new virulent Newcastle disease virus variants isolated in China. Journal of Clinical Microbiology 2008, 46:750-753.
28. Tan S.W., Omar A.R., Aini I., Yusoff K., Tan W.S. Detection of Newcastle disease virus using a SYBR Green I real time polymerase chain reaction. Archives of Virology 2004, 48:23-28.
29. Toyoda T., Sakaguchi T., Hirota H., Gotoh B., Kuma K., Miyata T., Nagai Y. Newcastle disease virus evolution. II. Lack of gene recombination in generating virulent and avirulent strains. Virology 1989, 169:273-282.
30. Umino Y., Kohama T., Sato T.A., Sugiura A., Klenk H.D., Rott R. Monoclonal antibodies to three structural proteins of Newcastle disease virus: biological characterization with particular reference to the conformational change of envelope glycoproteins associated with proteolytic cleavage. Journal of General Virology 1990, 71(Pt. 5):1189-1197.
31. Wang C.Y., Hsu C.J., Chen H.J., Chulu J.L., Liu H.J. Development of a reliable assay protocol for identification of diseases (RAPID)-bioactive amplification with probing (BAP) for detection of Newcastle disease virus. Veterinary Microbiology 2008, 130:28-36.
32. Wang Z., Vreede F.T., Mitchell J.O., Viljoen G.J. Rapid detection and differentiation F Newcastle disease virus isolates by a triple one-step RT-PCR. Onderstepoort Journal of Veterinary Research 2001, 68:131-134.
33. Werner O., Romer-Oberdorfer A., Kollne B., Manvell R.J., Alexander D.J. Characterization of avian paramyxovirus type 1 strains isolated in Germany during 1992 to1996. Avian Pathology 1999, 28:79-88.
34. Zanetti F., Mattiello R., Garbino C., Kaloghlian A., Terrera M.V., Boviez J., Palma E., Carrillo E., Berinstein A. Biological and molecular characterization of a pigeon paramyxovirus type-1 isolate found in Argentina. Avian Diseases 2001, 45:567-571.