Development of a real-time reverse-transcription PCR for the detection and simultaneous pathotyping of Newcastle disease virus isolates using a novel probe

Archives of Virology

Volumn 154, Issue 6, 2009, Pages 929-937

  Fuller, Chad Marshal ^a   Collins, M S ^a   Alexander, D J ^a  

^a VETERINARY LABORATORIES AGENCY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; BIRD; BIRD DISEASE; CLASSIFICATION; EVALUATION; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; NEWCASTLE DISEASE PARAMYXOVIRUS; OLIGONUCLEOTIDE PROBE; PATHOGENICITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

ANIMALS; BIRDS; NEWCASTLE DISEASE; NEWCASTLE DISEASE VIRUS; OLIGONUCLEOTIDE PROBES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

APPLE MOSAIC VIRUS; AVES; AVULAVIRUS; GALLIFORMES; NEWCASTLE DISEASE VIRUS;

EID: 67349118708     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-009-0391-z     Document Type: Article

References (29)

1. EW Aldous MS Collins A McGoldrick DJ Alexander 2001 Rapid pathotyping of Newcastle disease virus (NDV) using fluorogenic probes in a PCR assay Vet Microbiol 80 201 212 (Pubitemid 32406106)
2. EW Aldous DJ Alexander 2001 Detection and differentiation of Newcastle disease virus (avian paramyxovirus type 1) Avian Pathol 30 117 128 (Pubitemid 32453798)
3. EW Aldous JK Mynn J Banks DJ Alexander 2003 A molecular epidemiological study of avian paramyxovirus type 1 (Newcastle disease virus) isolates by phylogenetic analysis of a partial nucleotide sequence of the fusion protein gene Avian Pathol 32 3 239 257 (Pubitemid 36820961)
4. Alexander DJ (1998) Newcastle disease virus and other avian paramyxoviruses. In: Swayne DE, Glisson JR, Jackwood MW, Pearson JE, Reed WM (eds) A laboratory manual for the Isolation and Identification of avian pathogens. The American Association of Avian Pathologists, University of Pennsylvania, pp 156-163
5. DJ Alexander 2001 Newcastle disease Br Poult Sci 42 5 22 (Pubitemid 33254098)
6. Alexander DJ (2004) Newcastle disease. Chapter 2.1.15. OIE manual of standards for diagnostic tests and vaccines, 5th edn, vol I. OIE, Paris, pp 270-282
7. C Barbezange V Jestin 2002 Development of an RT-nested PCR test for detecting pigeon Paramyxovirus-1 directly from organs of infected animals J Virol Methods 106 197 207 (Pubitemid 35232604)
8. CEC (1992) Council directive 92/66/EEC of 14 July 1992 introducing Community measures for the control of Newcastle disease. Official Journal of the European Communities, vol. L260, pp 1-20
9. MS Collins JB Bashiruddin DJ Alexander 1993 Deduced amino acid sequences at the fusion protein cleavage site of Newcastle disease viruses showing variation in antigenicity and pathogenicity Arch Virol 128 363 370
10. MS Collins I Strong DJ Alexander 1994 Evaluation of the molecular basis of the pathogenicity of the variant Newcastle disease viruses termed 'pigeon PMV-1 viruses' Arch Virol 134 403 411 (Pubitemid 2053402)
11. A Czegledi D Ujvari E Somogyi E Wehmann O Werner B Lomniczi 2006 Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications Virus Res 120 1-2 36 48 (Pubitemid 43947299)
12. DS Gohm B Thür MA Hoffman 2000 Detection of Newcastle disease virus in organs and faeces of experimentally infected chickens using RT-PCR Avian Pathol 29 143 152 (Pubitemid 30221376)
13. JC Jarecki-Black DJ King 1993 An oligonucleotide probe that distinguishes isolates of low virulence from the more pathogenic strains of Newcastle disease virus Avian Dis 37 724 730
14. Kaleta EF, Baldauf C (1988) Newcastle disease in free-living and pet birds. In: Alexander DJ (ed) Newcastle disease. Kluwer, Boston, pp 197-246
15. AA Koshkin SK Singh P Nielsen VK Rajwanshi R Kumar M Meldgaard CE Olsen J Wengel 1998 LNA (Locked Nucleic Acids): Synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition Tetrahedron 54 14 3607 3630 (Pubitemid 28108183)
16. Lamb RA, Collins PL, Kolakofsky D, Melero JA, Nagai Y, Oldstone MBA, Pringle CR, Rima BK (2005) Family paramyxoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy, eighth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego, pp 655-668
17. C Letertre S Perelle F Dilasser K Arar P Fach 2003 Evaluation of the performance of LNA and MGB probes in 5 nuclease PCR assays Mol Cell Probes 17 307 311 (Pubitemid 37346500)
18. YP Li MF Zhang 2004 Rapid pathotyping of Newcastle disease virus from allantoic fluid and organs of experimentally infected chickens using two novel probes Arch Virol 149 1231 1243 (Pubitemid 38791669)
19. McFerran JB, McCracken RM (1988) Newcastle disease. In: Alexander DJ (ed) Newcastle disease. Kluwer, Boston, pp 161-183
20. A Oberdörfer O Werner 1998 Newcastle disease virus: detection and characterization by PCR of recent German isolates differing in pathogenicity Avian Pathol 27 237 243 (Pubitemid 28300943)
21. E Ohtsuka S Matsuki M Ikehara Y Takahashi K Matsubara 1985 An alternative approach to deoxyoligonucleotides as hybridization probes by insertion of deoxyinosine at ambiguous codon positions J Biol Chem 260 5 2605 2608 (Pubitemid 15139306)
22. BR Seal DJ King JD Bennet 1995 Characterisation of Newcastle disease virus isolates by reverse transcription PCR coupled to direct nucleotide sequencing and development of sequence database for pathotype prediction and molecular epidemiological analysis J Clin Microbiol 33 2624 2630
23. S Songhua S Chaogang X Caozhe Z Jian H Yongqiang W Jianhua G Zuxun 2003 Differentiation of velogenic, mesogenic and lentogenic strains of Newcastle disease virus by multiplex RT-PCR Ann Appl Biol 142 49 54 (Pubitemid 36658560)
24. Y Takahashi K Kato Y Hayashizaki T Wakabayashi E Ohtsuka S Matsuki M Ikehara K Matsubara 1985 Molecular cloning of the human cholecystokinin gene by use of a synthetic probe containing deoxyinosine Proc Natl Acad Sci USA 82 1931 1935 (Pubitemid 15060815)
25. SW Tan AR Omar I Aini K Yusoff WS Tan 2004 Detection of Newcastle disease virus using a SYBR Green I real time polymerase chain reaction Acta Virol 48 23 28
26. AK Tiwari RS Kataria T Nanthakumar BB Dash G Desai 2004 Differential detection of Newcastle disease virus by degenerate primers based RT-PCR Comp Immunol Microbiol Infect Dis 27 163 169 (Pubitemid 38262823)
27. Z Wang FT Vreede JO Mitchell GJ Viljoen 2001 Rapid detection and differentiation of Newcastle disease virus isolates by a triple one-step RT-PCR Onderstepoort J Vet Res 68 131 134 (Pubitemid 33405810)
28. NE Watkins Jr J SantaLucia Jr 2005 Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes Nucleic Acids Res 33 19 6258 6267 (Pubitemid 41742563)
29. MG Wise DL Suarez BS Seal JC Pederson DA Senne DJ King DR Kapczynski E Spackman 2004 Development of a real-time reverse-transcription PCR for detection of Newcastle disease virus RNA in clinical samples J Clin Microbiol 42 329 338 (Pubitemid 38082740)