Isolation, partial sequencing, and phylogenetic analyses of Soybean mosaic virus (SMV) in Ontario and Quebec

Canadian Journal of Plant Pathology

Volumn 31, Issue 1, 2009, Pages 108-113

  Viel, Catherine ^a   Ide, Christine ^a   Cui, Xiaoyan ^d   Wang, Aiming ^d   Farsi, Mohammad ^b   Michelutti, Roberto ^c   Strömvik, Martina ^a  

^a MCGILL UNIVERSITY   (Canada)

^b FERDOWSI UNIVERSITY OF MASHHAD   (Iran)

^c HARROW RESEARCH AND DEVELOPMENT CENTRE   (Canada)

^d AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

Glycine max; Phylogenetic analysis; Potyvirus; Soybean mosaic virus

Indexed keywords

GLYCINE MAX; POTYVIRUS; SOYBEAN MOSAIC VIRUS;

EID: 77955896934     PISSN: 07060661     EISSN: None     Source Type: Journal    
DOI: 10.1080/07060660909507579     Document Type: Article

References (22)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
2. Buss, G.R., Ma, G., Chen, P., and Tolin, S.A. 1997. Registration of V94-5152 soybean germplasm resistant to soybean mosaic potyvirus. Crop Sci. 37: 1987-1988.
3. Buss, G.R., Ma, G., Kristipati, S., Chen, P., and Tolin, S.A. 1999. A new allele at the Rsv3 locus for resistance to Soybean mosaic virus. In Proceedings of the World Soybean Research Conference, VI, Chicago, Illinois, 4-7 August 1999. Edited by H.E. Kaufman. Superior Printing, Chicago. pp. 490.
4. Chen, P., Buss, G.R., Tolin, S.A., Gunduz, I., and Cicek, M. 2002. A valuable gene in Suweon 97 soybean for resistance to Soybean mosaic virus. Crop Sci. 42: 333-337. (Pubitemid 34714141)
5. Chen, J., Zheng, H.-Y., Lin, L., Adams, M.J., Antoniw, J.F., Zhao, M.-F., Shang, Y.-F., and Chen, J.-P. 2004. A virus related to Soybean mosaic virus from Pinellia ternate in China and its comparison with local soybean SMV isolates. Arch. Virol. 149: 349-363.
6. Cheng, K.C.C., and Strömvik, M.V. 2008. SoyXpress: a database for exploring the soybean transcriptome. BMC Genomics, 9: 368.
7. Eggenberger, A.L., Stark, D.M., and Beachy, R.N. 1989. The nucleotide sequence of Soybean mosaic virus coat protein-coding region and its expression in Escherichia coli, Agrobacterium tumefaciens and Tobacco callus. J. Gen. Virol. 70: 1853-1860.
8. Felsenstein, J. 1985. Confidence limits of phylogenies: an approach using the bootstrap. Evolution, 39: 783-791.
9. Fu, S., Zhan, Y., Zhi, H., Gai, J., and Yu, D. 2006. Mapping of SMV resistance gene Rsc-7 by SSR markers in soybean. Genetica, 128: 63-69.
10. Gagarinova, A.G., Babu, M., Poysa, V., Hill, J., and Wang, A. 2008. Identification and molecular characterization of two naturally occurring Soybean mosaic virus isolates that are closely related but differ in their ability to overcome Rsv4 resistance. Virus Res. 138: 50-56.
11. Gunduz, I., Buss, G.R., Chen, P., and Tolin, S.A. 2002. Characterization of SMV resistance genes in Tousan 140 and Hourei soybean. Crop Sci. 42: 90-95.
12. Hajimorad, M.R., Eggenberger, A.L., and Hill, J.H. 2003. Evolution of Soybean mosaic virus-G7 molecularly cloned genome in Rsv1-genotype soybean results in emergence of a mutant capable of evading Rsv1-mediated recognition. Virology, 314: 497-509.
13. Hill, J.H. 2003. Soybean. In Virus and virus-like diseases of major crops in developing countries. Edited by G. Loebenstein and G. Thottappilly. Kluwer Academic Publishers, the Netherlands. pp. 377-395.
14. Jayaram, C., Hill, J.H., and Miller, W.A. 1992. Complete nucleotide sequences of two Soybean mosaic virus strains differentiated by response of soybean containing the Rsv resistance gene. J. Gen. Virol. 73: 2067-2077.
15. Kiihl, R.A.S., and Hartwig, E.E. 1979. Inheritance of reaction to soybean mosaic virus in soybeans. Crop Sci. 19: 372-375.
16. Lim, W.S., Kim, Y.H., and Kim, K.H. 2003. Complete genome sequences of the genomic RNA of Soybean mosaic virus strains G7H and G5. Plant Pathol. J. 19: 171-176.
17. Strömvik, M.V., Latour, F., Archambault, A., and Vodkin, L.O. 2006. Identification and phylogenetic analysis of sequences of Bean pod mottle virus, Soybean mosaic virus, and Cowpea chlorotic mottle virus in expressed sequence tag data from soybean. Can. J. Plant Pathol. 28: 1-12.
18. Swofford, D.L. 2002. PAUP*: phylogenetic analysis using parsimony (and other methods). Version 4.0 Beta test 10. Sinauer Associates, Sunderland, Mass.
19. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
20. Tu, J.C. 1986. Incidence of soybean mosaic virus and tobacco ringspot virus in southwestern Ontario. Can. Plant Dis. Surv. 66: 49-50.
21. United States Department of Agriculture. 2004. Production Estimates and Crop Assessment Division Foreign Agriculture Service. Available from http://www.fas.usda.gov/remote/Canada/cansoy.html [accessed on 30 April 2009].
22. Yu, Y.G., Saghai Maroof, M.A., Buss, G.R., Maughan, P.J., and Tolin, S.A. 1994. RFLP and microsatellite mapping of a gene for Soybean mosaic virus resistance. Phytopathology, 84: 60-64.