Archaeology of tubercle bacilli and tuberculosis

Kekkaku

Volumn 85, Issue 5, 2010, Pages 465-475

  Iwai, Kazuro ^a   Maeda, Shinji ^a   Murase, Yoshirou ^a  

^a RESEARCH INSTITUTE OF TUBERCULOSIS   (Japan)

Author keywords

Gene mutation; Genogeography; Mummy bone tuberculosis; Phylogenesis; Tubercle bacilli

Indexed keywords

ARCHEOLOGY; ARTICLE; EPIDEMIC; HISTORY; HUMAN; MYCOBACTERIUM TUBERCULOSIS; PALEOPATHOLOGY; TUBERCULOSIS;

ARCHAEOLOGY; DISEASE OUTBREAKS; HISTORY, ANCIENT; HUMANS; MUMMIES; MYCOBACTERIUM TUBERCULOSIS; TUBERCULOSIS;

EID: 77955891254     PISSN: 00229776     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (38)

1. Phylogenetic Tree of the Life-j.png. http://wikipedia.org/ wiki
2. Underhill PA, Passarino G, Lin AA, et al.: The phygeography of Y chromosome binary halotypes and the origins of modern human populations. Ann Hum Genet. 2001; 65: 43-62. (Pubitemid 32390189)
3. Morse D, Brothwell DR, Ucko PJ: Tuberculosis in ancient Egypt. Am Rev Respir Dis. 1964; 90: 524-541.
4. Zimmerman MR: Pulmonary and osseous tuberculosis in an Egyptian mummy. Bull NY Acad Med. 1979; 55: 604-608. (Pubitemid 9200462)
5. Zink A, Haas CJ, Reischl U, et al.: Molecular analysis of skeletal tuberculosis in an ancient Egyptian population. J Med Microbiol. 2001; 50: 355-366. (Pubitemid 32239020)
6. Zink AR, Sola C, Reischl U, et al.: Characterization of Mycobacterium tuberculosis complex DNAs from Egyptian mummies by spoligotyping. J Clin Microbiol. 2003; 41: 359-367. (Pubitemid 36098600)
7. Taylor GM, Young DB, Mays SA: Genotypic analysis of the earliest known prehistoric case of tuberculosis in Britain. J Clin Microbiol. 2005; 43: 2236-2240. (Pubitemid 40656233)
8. Haas CJ, Zink A, Molnar E, et al.: Molecular evidence for different stages of tuberculosis in ancient bone samples from Hungary. Am J Phys Anthropol. 2000; 113: 293-304.
9. Allison MJ, Mendoza D, Pezzia A: Documentation of a case of tuberculosis in Pre-Columbian America. Am Rev Respir Dis. 1973; 107: 985-991.
10. Hershkovitz I, Donoghue HD, Minnikin DE, et al.: Detection and molecular characterization of 9,000-year-old Mycobacterium tuberculosis from a Neolithic settelement in the eastern Mediterranean. PLos One. 2008; 3: e3426, 1-6.
11. Rothschild BM, Martin LD, Lev G, et al.: Mycobacterium tuberculosis complex DNA from an extinct bison dated 17,000 years before the present. Clin Infect Dis. 2001; 33: 305-311. (Pubitemid 32664832)
12. Suzuki T, Inoue T: Earliest evidence of spinal tuberculosis from the aneolithic Yayoi Period in Japan. International Journal of Osteroarchaeology. 2006; 17: 392-402.
13. Suzuki T, Fujita H, Choi JG, et al.: New evidence of tuberculosis from prehistoric Korea-population movement and early evidence of tuberculosis in Far East Asia. Am J Phys Anthropol. 2008; 136: 357-360. (Pubitemid 351897311)
14. Hughes AL, Friedman R, Murray M: Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis. Emerg Infect Dis. 2002; 8: 1342-1346. (Pubitemid 35334711)
15. Mostowy S, Cousins D, Brinkman J, et al.: Genomic deletions suggest a phylogeny for the Mycobecterium tuberculosis complex. J Infec Dis. 2002; 186: 74-80. (Pubitemid 34666916)
16. Brosch R, Gordon SV, Marmiesse M: A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc Nat Acad Sci USA. 2002; 99: 3684-3689. (Pubitemid 34252166)
17. Huard RC, de Oliveira Lazzarinini LC, Butler WR, et al.: PCR-based method to differentiate the subspecies of the Mycobacterium tuberculosis complex on the basis of genomic deletion. J Clin Microbact. 2003; 41: 1637-1650. (Pubitemid 36428112)
18. Baker L, Brown T, Maiden MC, et al.: Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis. Emerg Infect Dis. 2004; 10: 1568-1577. (Pubitemid 39201508)
19. Huard RC, Fabre M, de Haas P, et al.: Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex. J Bacteriol. 2006; 188: 4271-4287. (Pubitemid 43865747)
20. Gutierrez MC, Brisse S, Brosch R, et al.: Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis. PLos Patholog. 2005; 1: e5.
21. Crubézy E, Legal L, Fabas G, et al.: Pathogeny of archaic mycobacteria at the emergence of urban life in Egypt (3400 BC). Infect Genet Evol. 2006; 6: 13-21. (Pubitemid 43115685)
22. Filliol I, Motiwala AS, Cavatore M, et al.: Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems. And recommendations for a minimal standard SNP set. J Bacteriol. 2006; 188: 759-772. (Pubitemid 43100562)
23. Gagneux S, DeRiemer K, Van T, et al.: Variable hostpathogen compatibility in Mycobacterium tuberculosis. Proc Natl Acad Sci USA. 2006; 103: 2869-2873.
24. Gutacker MM, Mathema B, Soini H, et al.: Single-nucleotide polymorphism-basesd population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites. J Infect Dis. 2006; 193: 121-127.
25. Gagneux S, Small M: Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development. Lancet Infect Dis. 2007; 7: 328-337. (Pubitemid 46590063)
26. Wirth T, Hilderbrand F, Allix-Béguec C: Origin, spread and demography of the Mycobacterium tuberculosis complex. PLoS Pathog. 2008; 4 (9): e1000160.
27. Hershberg R, Lipatov M, Small PM, et al.: High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008; 6 (12): e311.
28. Plikaytis BB, Marden JL, Crawford JT, et al.: Multiplex PCR assay specific for the multidrug-resistant strain W of Mycobacterium tuberculosis. J Clin Microbiol. 1994; 32: 1542-1546. (Pubitemid 24179390)
29. Kurepina NE, Sreevatsan S, Plikaytis BB, et al.: Characterization of the phylogenetic distribution and chromosomal insertion sites of five IS 6110 elements in Mycobacterium tuberculosis: non-random integration in the dnaA-dnaN region. Tuberc Lung Dis. 1998; 79: 31-42. (Pubitemid 29050435)
30. Tsolaki AG, Gagneux S, Pym AS, et al.: Genomic deletions classify the Beijing/W strains as a distinct genetic lineage of Mycobacterium tuberculosis. J Clin Micorbiol. 2005; 43: 3185-3191. (Pubitemid 40981321)
31. Mokrousov I, Narvskaya O, Otten T, et al.: Phylogenetic reconstruction within Mycobacterium tuberculosis Beijin genotype in northern Russia. Res Microbiol. 2002; 153: 629-637. (Pubitemid 35449266)
32. Mokrousov I, Ly HM, Otten T, et al.: Origin and primary dispersal of the Mycobacterium tuberculosis Beijing geno type: Clues from human phylogeography. Genom Res. 2005; 15: 1357-1364. (Pubitemid 41400901)
33. Millet J, Miyagi-Shiohara C, Yamane N, et al.: Assessment of mycobacterial interspersed repetitive unit-QUB markers to further discriminate the Beijing genotype in a populationbased study of the genetic diversity of Mycobacterium tuberculosis clinical isolates from Okinawa, Ryukyu islands, Japan. J Clin Microbiol. 2007; 45: 3606-3615. (Pubitemid 350156856)
34. Murase Y, Mitarai S, Sugawara I, et al.: Promising loci of variable numbers of tandem repeats for typing Beijing family Mycobacteium tuberculosis. J Med Micorbiol. 2008; 57: 873-880.
35. Wada T, Iwamoto T, Maeda S: Genetic diversity of the Mycobacterium tuberculosis Beijing family in East Asia revealed through refined population structure analysis. FEMS Micorbiol Letter. 2009; 291: 35-43.
36. Rindi L, Lari N, Cuccu B, et al.: Evolutionary pathway of the Beijing lineage of Mycobacterium tuberculosis based on genomic deletions and mutT genes polymorphisms. Infect Genet Evolution. 2009; 9: 48-53.
37. Kremer K, van der Wert MJ, Au BK, et al.: Vaccine-induced immunity circumvented by typical Mycobacterium tuberculosis Beijing strains. Emerg Infect Dis. 2009; 15: 335-339.
38. Parwati I, von Crevel R, von Sookingen D: Possible underlying mechanism for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains. The Lancet Infection. 2010; 10: 103-111.