Identification and molecular characterization of a new double-stranded RNA virus infecting Chondrostereum purpureum

Canadian Journal of Plant Pathology

Volumn 30, Issue 4, 2008, Pages 604-613

  Shamoun, S F ^a   Varga, A ^b   Valverde, R A ^c   Ramsfield, T ^d   Sumampong, G ^a   Elliott, M ^a   Masri, S ^b   James, D ^b  

^a PACIFIC FORESTRY CENTRE   (Canada)

^b Canadian Food Inspection Agency   (Canada)

^c LOUISIANA STATE UNIVERSITY   (United States)

^d SCION   (New Zealand)

Author keywords

Alphacryptovirus; Double stranded RNA virus; Mycoherbicide; Partitiviridae mycovirus; Phylogenetic analysis

Indexed keywords

ALPHACRYPTOVIRUS; BASIDIOMYCOTA; CHONDROSTEREUM PURPUREUM; FUNGI; MYCOVIRUS; PARTITIVIRIDAE; RNA VIRUSES;

EID: 77955879919     PISSN: 07060661     EISSN: None     Source Type: Journal    
DOI: 10.1080/07060660809507561     Document Type: Article

References (51)

1. Attoui, H., Billoir, F., Cantaloube, J.F., Biagini, P., de Micco, P., and de Lamballerie, X. 2000. Strategies for the sequence determination of viral dsRNA genomes. J. Virol. Methods, 89: 147-158
2. Batten, J.S., Scholthof, K.-B.G., Miller, M.E., and Martyn, R.D. 2000. cDNA probes for detection of specific dsRNAs from the fungal pathogen, Monosporascus cannonballus. J. Virol. Methods, 84: 209-215.
3. Becker, E., Shamoun, S.F., and Hintz, W.E. 2005. Efficacy and environmental fate of Chondrostereum purpureum used as a biological control for red alder (Alnus rubra). Biol. Control, 33: 269-277.
4. Bishop, G.C. 1979. Infection of cherry trees and production of a toxin that causes foliar silvering by different isolates of Chondrostereum purpureum. Aust. J. Agric. Res. 30: 659-1655
5. Blawid, R., Stephan, D., and Maiss, E. 2007. Molecular characterization and detection of Vicia cryptic virus in different Vicia faba cultivars. Arch. Virol. 152: 1477-1488.
6. Boccardo, G., and Candresse, T. 2005. Complete sequence of the RNA2 of an isolate of White clover cryptic virus 1, type species of the genus Alphacryptovirus. Arch. Virol. 150: 403-405. (Pubitemid 40171944)
7. Boland, G.J. 1992. Hypovirulence and double-stranded RNA in Sclerotinia sclerotiorum. Can. J. Plant Pathol. 14: 10-17.
8. Buck, K.W. 1986. Fungal virology-an overview. In Fungal virology. Edited by K.W. Buck. CRC Press, Boca Raton, Fla. pp. 1-84.
9. Bus, V.G., Spiers, A.G., Brewster, D.T., and Hofstee, M.E. 1996. Preliminary screening of apple germplasm for resistance to silverleaf infection. N.Z. J. Crop Hortic. Sci. 24: 1-6.
10. Castro, M., Kramer, K., Valdivia, L., Ortiz, S., and Castillo, A. 2003. A double-stranded RNA mycovirus confers hypovirulenceassociated traits to Botyritis cinerea. FEMS Microbiol. Lett. 228: 87-91.
11. Chen, L., Chen, J.S., Liu, L., Yu, X., Yu, S., Fu, T.Z., and Liu, W.H. 2006. Complete nucleotide sequences and genome characterization of double-stranded RNA 1 and RNA 2 in the Raphanus sativus-root cv. Yipinghong. Arch. Virol. 151: 849-859.
12. Choi, G.H., and Nuss, D.L. 1992. A viral gene confers hypovirulence-associated traits to the chestnut blight fungus. EMBO J. 11: 473-477.
13. Cunningham, G.H. 1925. Fungous diseases of fruit-trees in New Zealand and their remedial treatment. Brett Printing and Publishing Co., Auckland, N.Z.
14. de Jong, M.D., Scheepens, P.C., and Zadoks, J.C. 1990. Risk analysis for biological control: a Dutch case study in biological control of Prunus serotina by the fungus Chondrostereum purpureum. Plant Dis. 74: 189-194.
15. de la Bastide, P.Y., Zhu, H., Shrimpton, G., Shamoun, S.F., and Hintz, W.E. 2002. Chondrostereum purpureum: an alternative to chemical herbicide brush control. In Environmental Concerns in Rights-of-Way Management. Seventh International Symposium, Calgary, Alberta, 9-13 September 2000. Edited by J.W. Goodrich-Mahoney, D.F. Mutrie, and C.A. Guild. Elsevier Science, New York. pp. 665-672.
16. Dye, M.H. 1971. Wound protection on deciduous fruit trees. N.Z. J. Agric. Res. 14: 526-543.
17. Dye, M.H. 1972. Silverleaf disease of fruit trees. New Zealand Ministry of Agriculture and Fisheries, Wellington, N.Z. Bull. 104.
18. Fauquet, C.N., Mayo, M.A., Maniloff, J., Desselberger, U., and Ball, L.A. 2005. Virus taxonomy. In Eight report of the International Committee on Taxonomy of Viruses. Edited by C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, and A.L. Ball. Elsevier Academic Press, San Diego, Calif. pp. 571-601.
19. Gadgil, P.D., and Bawden, A.D. 1981. Infection of wounds in Eucalyptus delegatensis. N.Z. J. For. Sci. 11: 262-270.
20. Ghabrial, S.A. 1986. A transmissible disease of Helminthosporium victoriae-evidence for a viral etiology. In Fungal virology. Edited by K.W. Buck. CRC Press, Boca Raton, Fla. pp. 163-176.
21. Ghabrial, S.A., Buck, K.W., Hillman, B.I., and Milne, R.G. 2005. Partitiviridae. In Eight report of the International Committee on Taxonomy of Viruses. Edited by C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, and A.L. Ball. Elsevier Academic Press, San Diego, Calif. pp 581-590.
22. Hintz, W.E., Becker, E.M., and Shamoun, S.F. 2001. Development of genetic markers for risk assessment of biological control agents. Can. J. Plant Pathol. 23: 13-18.
23. James, D., and Mukerji, S. 1993. Mechanical transmission, identification, and characterization of a virus associated with mottle leaf in cherry. Plant Dis. 77: 271-275.
24. James, D., and Upton, C. 1999. Single primer pair designs that facilitate simultaneous detection and differentiation of peach mosaic virus and cherry mottle leaf virus. J. Virol. Methods, 83: 103-111.
25. Jian, J., Lakshman, D.K., and Tavantzis, S.M. 1997. Association of distinct double-stranded RNAs with enhanced or diminished virulence of Rhizoctonia solani infecting potato. Mol. Plant-Microbe Interact. 10: 1002-1009.
26. Jobidon, R. 1998. Comparative efficacy of biological and chemical control of the vegetative reproduction in Betula papyrifera and Prunus pensylvanica. Biol. Control, 11: 22-28.
27. Kamer, G., and Argos, P. 1984. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res. 12: 7269-7282.
28. Kim, J.W., Kim, S.Y., and Kim, K.M. 2003. Genome organization and expression of the Penicillium stoloniferum virus S. Virus Genes, 27: 249-256.
29. Koonin, E.V. 1991. The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J. Gen. Virol. 72: 2197-2206.
30. Lim, W.-S., Jeong, J.H., Jeong, R.-D., Yoo, Y.B., Yie, S.W., and Kim, K.-H. 2005. Complete nucleotide sequence and genome organization of a dsRNA partitivirus infecting Pleurotus ostreatus. Virus Res. 108: 111-119.
31. Miyairi, K., Fujita, K., Okuno, T., and Sawai, K. 1977. A toxic protein causative of silver-leaf disease symptoms on apple trees. Agric. Biol. Chem. 41: 1897-1902.
32. Newhouse, J.R., Tooley, P.W., Smith, O.P., and Fishel, R.A. 1992. Characterization of double-stranded RNA in isolates of Phytophthora infestans from Mexico, the Netherlands, and Peru. Phytopathology, 82: 164-169.
33. Nuss, D.L. 2005. Hypovirulence: mycoviruses at the fungal-plant interface. Nature Rev. Microbiol. 3: 632-642.
34. Osaki, H., Nomura, K., Iwanami, T., Kanematsu, S., Okabe, I., Matsumoto, N., Sasaki, A., and Ohtsu, Y. 2002. Detection of a double-stranded RNA virus from a strain of the violet root rot fungus Helicobasidium mompa Tanaka. Virus Genes, 25: 139-145.
35. Park, C.M., Banerjee, N., Koltin, Y., and Bruenn, J.A. 1996. The Ustilago maydis virally encoded KP1 killer toxin. Mol. Microbiol. 20: 957-963.
36. Park, Y., James, D., and Punja, Z.K. 2005. Co-infection by two distinct totivirus-like double-stranded RNA elements in Chalara elegans (Thielaviopsis basicola). Virus Res. 109: 71-85.
37. Perrière, G., and Gouy, M. 1996. WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie, 78: 364-369.
38. Preisig, O., Moleleki, N., Smit, W.A., Wingfield, B.D., and Wingfield, M.J. 2000. A novel RNA mycovirus in a hypovirulent isolate of the plant pathogen Diaporthe ambigua. J. Gen. Virol. 81: 3107-3114.
39. Ramsfield, T.D. 2006. Risk assessment of inundative biological control with Chondrostereum purpureum in New Zealand. N.Z. J. For. Sci. 36: 11-20.
40. Rayner, A.D.M. 1977. Fungal colonization of hardwood stumps from natural sources. II. Basidiomycetes. Trans. Br. Mycol. Soc. 69: 303-312.
41. Saitou, N., and Nei, M. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Ecol. 4: 406-425.
42. Sambrook, J., and Russell, D.W. 2001. Molecular cloning: a laboratory manual 93rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
43. Shamoun, S.F. 2000. Application of biological control to vegetation management in forestry. In Proceedings of the X International Symposium on Biological Control of Weeds, Bozeman, Montana, 4-14 July 1999. Edited by N.R. Spencer. Montana State University, Bozeman, Mont. pp. 87-96.
44. Shamoun, S.F. 2006. Implementation of weed biocontrol in forest vegetation management for conifer production. In Handbook of sustainable weed management. Edited by H.P. Singh, D.R. Batish, and R.K. Kohli. Haworth Press Inc., Philadelphia, Pa. pp. 475-506.
45. Shamoun, S.F., Valverde, R.A., and Ramsfield, T.D. 1996. Detection of double-stranded RNA and virus-like particles in Chondrostereum purpureum and their effects on virulence. Can. J. Plant Pathol. 18: 100. [Abstr.]
46. Shamoun, S.F., Macey, D.E., Prasad, R., and Winder, R.S. 2002. Acer, Alnus, Betula, Populus and Prunus weedy hardwood trees (Aceraceae, Beulaceae, Salicaceae, Rosaceae). In Biological control programmes in Canada 1981-2000. Edited by P.G. Mason and J.T. Huber. CABI Publishing, Oxford, UK. pp. 283-290.
47. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougi, F., and Higgins, D.G. 1997. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
48. Tzanetakis, I.E., Price, R., and Martin, R.R. 2008. Nucleotide sequence of the tripartite Fragaria chiloensis cryptic virus and presence of the virus in the Americas. Virus Genes, 36: 267-272.
49. Valverde, R.A., Nameth, S.T., and Jordan, R.L. 1990. Analysis of double-stranded RNA for plant virus diagnosis. Plant Dis. 74: 255-258.
50. Wall, R.E. 1991. Pathological effects of Chondrostereum purpureum in inoculated yellow birch and beech. Can. J. Plant Pathol. 13: 81-87.
51. Wall, R.E. 1994. Biological control of red alder using stem treatments with the fungus Chondrostereum purpureum. Can. J. For. Res. 24: 1527-1530.