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Volumn 79, Issue 4, 2010, Pages 538-542

A robust universal method for extraction of genomic DNA from bacterial species

Author keywords

bacteria; genomic DNA extraction; RAPD

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 77955839330     PISSN: 00262617     EISSN: None     Source Type: Journal    
DOI: 10.1134/S0026261710040168     Document Type: Article
Times cited : (58)

References (27)
  • 1
    • 0033230808 scopus 로고    scopus 로고
    • A Method for Extraction of High-Quality and High-Quantity Genomic DNA Generally Applicable to Pathogenic Bacteria
    • Kalia, A., Rattan, A., and Chopra, P., A Method for Extraction of High-Quality and High-Quantity Genomic DNA Generally Applicable to Pathogenic Bacteria, Anal. Biochem., 1999, vol. 275, no. 1, pp. 1-5.
    • (1999) Anal. Biochem. , vol.275 , Issue.1 , pp. 1-5
    • Kalia, A.1    Rattan, A.2    Chopra, P.3
  • 2
    • 18544387632 scopus 로고    scopus 로고
    • Comparison of Six Methods of Extracting Mycobacterium tuberculosis DNA from Processed Sputum for Testing by Quantitative Real-Time PCR
    • Aldous, W. K., Pounder, J. I., Cloud, J. L., and Woods, G. L., Comparison of Six Methods of Extracting Mycobacterium tuberculosis DNA from Processed Sputum for Testing by Quantitative Real-Time PCR, J. Clin. Microbiol., 2005, vol. 43, no. 5, pp. 2471-2473.
    • (2005) J. Clin. Microbiol. , vol.43 , Issue.5 , pp. 2471-2473
    • Aldous, W.K.1    Pounder, J.I.2    Cloud, J.L.3    Woods, G.L.4
  • 3
    • 0035125136 scopus 로고    scopus 로고
    • A Rapid Procedure for Isolating Chromosomal DNA from Lactobacillus species and Other Gram-Positive Bacteria
    • Ulrich, R. L. and Hughes, T. A., A Rapid Procedure for Isolating Chromosomal DNA from Lactobacillus species and Other Gram-Positive Bacteria, Lett. Appl. Microbiol., 2001, vol. 32, no. 1, pp. 52-56.
    • (2001) Lett. Appl. Microbiol. , vol.32 , Issue.1 , pp. 52-56
    • Ulrich, R.L.1    Hughes, T.A.2
  • 4
    • 24644504130 scopus 로고    scopus 로고
    • Toxicogenomics of Cationic Lipid-Based Vectors for Gene Therapy: Impact of Microarray Technology
    • Omidi, Y., Barar, J., and Akhtar, S., Toxicogenomics of Cationic Lipid-Based Vectors for Gene Therapy: Impact of Microarray Technology, Curr. Drug. Deliv., 2005, vol. 2, no. 4, pp. 429-441.
    • (2005) Curr. Drug. Deliv. , vol.2 , Issue.4 , pp. 429-441
    • Omidi, Y.1    Barar, J.2    Akhtar, S.3
  • 5
    • 0035696280 scopus 로고    scopus 로고
    • Rep-PCR-A Variant to RAPD or an Independent Technique of Bacteria Genotyping? A Comparison of the Typing Properties of rep-PCR with Other Recognised Methods of Genotyping of Microorganisms
    • Baldy-Chudzik, K., Rep-PCR-A Variant to RAPD or an Independent Technique of Bacteria Genotyping? A Comparison of the Typing Properties of rep-PCR with Other Recognised Methods of Genotyping of Microorganisms, Acta Microbiol. Pol., 2001, vol. 50, no. 3-4, pp. 189-204.
    • (2001) Acta Microbiol. Pol. , vol.50 , Issue.3-4 , pp. 189-204
    • Baldy-Chudzik, K.1
  • 6
    • 0029815667 scopus 로고    scopus 로고
    • A PCR-Based DNA Fingerprinting Technique: AFLP for Molecular Typing of Bacteria
    • Lin, J. J., Kuo, J., and Ma, J., A PCR-Based DNA Fingerprinting Technique: AFLP for Molecular Typing of Bacteria, Nucleic Acids Res., 1996, vol. 24, no. 18, pp. 3649-3650.
    • (1996) Nucleic Acids Res. , vol.24 , Issue.18 , pp. 3649-3650
    • Lin, J.J.1    Kuo, J.2    Ma, J.3
  • 7
    • 26644438794 scopus 로고    scopus 로고
    • Rapid Identification of Dairy Lactic Acid Bacteria by M13-Generated, RAPD-PCR Fingerprint Databases
    • Rossetti, L., Giraffa, G., Rapid Identification of Dairy Lactic Acid Bacteria by M13-Generated, RAPD-PCR Fingerprint Databases, J. Microbiol. Meth., 2005, vol. 63, no. 2, pp. 135-144.
    • (2005) J. Microbiol. Meth. , vol.63 , Issue.2 , pp. 135-144
    • Rossetti, L.1    Giraffa, G.2
  • 8
    • 0036175870 scopus 로고    scopus 로고
    • Genotyping of Bacteria Belonging to the Former Erwinia Genus by PCR-RFLP Analysis of a recA gene treatment
    • Waleron, M., Waleron, K., Podhajska, A. J., and Lojkowska, E., Genotyping of Bacteria Belonging to the Former Erwinia Genus by PCR-RFLP Analysis of a recA gene treatment, Microbiology (UK), 2002, vol. 148, no. 2, pp. 583-595.
    • (2002) Microbiology (UK) , vol.148 , Issue.2 , pp. 583-595
    • Waleron, M.1    Waleron, K.2    Podhajska, A.J.3    Lojkowska, E.4
  • 9
    • 62349085217 scopus 로고    scopus 로고
    • New Strategies for Electrophoresis Analysis of Enterobacterial Repetitive Intergenic Consensus PCR in Animal Intestinal Microflora
    • Yang, J. L., Cheng, A. C., Wang, M. S., Pan, K. C., Luo, Q. H., Zhu, D. K., Chen, X. Y., and Qi, X. F., New Strategies for Electrophoresis Analysis of Enterobacterial Repetitive Intergenic Consensus PCR in Animal Intestinal Microflora, J. Microbiol. Meth., 2009, vol. 77, no. 1, pp. 63-66.
    • (2009) J. Microbiol. Meth. , vol.77 , Issue.1 , pp. 63-66
    • Yang, J.L.1    Cheng, A.C.2    Wang, M.S.3    Pan, K.C.4    Luo, Q.H.5    Zhu, D.K.6    Chen, X.Y.7    Qi, X.F.8
  • 10
    • 37349030799 scopus 로고    scopus 로고
    • An Optimized Mini-Preparation Method to Obtain High-Quality Genomic DNA from Mature Leaves of Sunflower
    • Li, J. T., Yang, J., Chen, D. C., Zhang, X. L., and Tang, Z. S., An Optimized Mini-Preparation Method to Obtain High-Quality Genomic DNA from Mature Leaves of Sunflower, Genet. Mol. Res., 2007, vol. 6, no. 4, pp. 1064-1071.
    • (2007) Genet. Mol. Res. , vol.6 , Issue.4 , pp. 1064-1071
    • Li, J.T.1    Yang, J.2    Chen, D.C.3    Zhang, X.L.4    Tang, Z.S.5
  • 11
    • 45249092106 scopus 로고    scopus 로고
    • Comparison of Three DNA Extraction Methods for Mycobacterium bovis, Mycobacterium tuberculosis and Mycobacterium avium subsp. avium
    • Amaro, A., Duarte, E., Amado, A., Ferronha, H., and Botelho, A., Comparison of Three DNA Extraction Methods for Mycobacterium bovis, Mycobacterium tuberculosis and Mycobacterium avium subsp. avium, Lett. Appl. Microbiol., 2008, vol. 47, no. 1, pp. 8-11.
    • (2008) Lett. Appl. Microbiol. , vol.47 , Issue.1 , pp. 8-11
    • Amaro, A.1    Duarte, E.2    Amado, A.3    Ferronha, H.4    Botelho, A.5
  • 12
    • 0034141816 scopus 로고    scopus 로고
    • A Scalable Protocol for the Isolation of Large-Sized Genomic DNA within an Hour from Several Bacteria
    • Syn, C. K. C. and Swarup, S., A Scalable Protocol for the Isolation of Large-Sized Genomic DNA within an Hour from Several Bacteria, Anal. Biochem., 2000, vol. 278, no. 1, pp. 86-90.
    • (2000) Anal. Biochem. , vol.278 , Issue.1 , pp. 86-90
    • Syn, C.K.C.1    Swarup, S.2
  • 13
    • 0028861722 scopus 로고
    • Extraction of Genomic DNA from Extracellular Polysaccharide-Synthesizing Gram-Negative Bacteria
    • Chan, J. W. Y. F. and Goodwin, P. H., Extraction of Genomic DNA from Extracellular Polysaccharide-Synthesizing Gram-Negative Bacteria, BioTechniques, 1995, vol. 18, no. 3, pp. 418-422.
    • (1995) BioTechniques , vol.18 , Issue.3 , pp. 418-422
    • Chan, J.W.Y.F.1    Goodwin, P.H.2
  • 14
    • 0037290303 scopus 로고    scopus 로고
    • A Simple Method for DNA Extraction from Marine Bacteria that Produce Extracellular Materials
    • Lee, Y. K., Kim, H. W., Liu, C. L., and Lee, H. K., A Simple Method for DNA Extraction from Marine Bacteria that Produce Extracellular Materials, J. Microbiol. Meth., 2003, vol. 52, no. 2, pp. 245-250.
    • (2003) J. Microbiol. Meth. , vol.52 , Issue.2 , pp. 245-250
    • Lee, Y.K.1    Kim, H.W.2    Liu, C.L.3    Lee, H.K.4
  • 15
    • 0242425721 scopus 로고    scopus 로고
    • Efficient Extraction of Viral DNA and Viral RNA by the Chemagic Viral DNA/RNA Kit Allows Sensitive Detection of Cytomegalovirus, Hepatitis B Virus, and Hepatitis G Virus by PCR
    • Kleines, M., Schellenberg, K., and Ritter, K., Efficient Extraction of Viral DNA and Viral RNA by the Chemagic Viral DNA/RNA Kit Allows Sensitive Detection of Cytomegalovirus, Hepatitis B Virus, and Hepatitis G Virus by PCR, J. Clin. Microbiol., 2003, vol. 41, no. 11, pp. 5273-5276.
    • (2003) J. Clin. Microbiol. , vol.41 , Issue.11 , pp. 5273-5276
    • Kleines, M.1    Schellenberg, K.2    Ritter, K.3
  • 16
    • 0029320145 scopus 로고
    • A Versatile Quick-Prep of Genomic DNA from Gram-Positive Bacteria
    • Pospiech, A. and Neumann, B., A Versatile Quick-Prep of Genomic DNA from Gram-Positive Bacteria, Trends Genet., 1995, vol. 11, no. 6, pp. 217-218.
    • (1995) Trends Genet. , vol.11 , Issue.6 , pp. 217-218
    • Pospiech, A.1    Neumann, B.2
  • 17
    • 77955821372 scopus 로고    scopus 로고
    • Atashpaz, S., Barzegari, A., and Azarbaijani, R., General DNA extraction kit, Iran Patent 48024, 2008.
  • 18
    • 77956108390 scopus 로고    scopus 로고
    • Barzegari, A., Atashpaz, S., Ghabili, K., Nemati, Z., Rustaei, M., and Azarbaijani, R., Polymorphisms in GDF9 and BMP15 Associated with Fertility and Ovulation Rate in Moghani and Ghezel Sheep in Iran, Reprod. Domest. Anim., 2009, doi: 10. 1111/j. 1439-0531. 2008. 01327. x, In press.
  • 19
    • 77950655518 scopus 로고    scopus 로고
    • Rapid and Simple Methodology for Isolation of High Quality Genomic DNA from Coniferous Tissues (Taxus baccata)
    • Barzegari, A., Vahed, S. Z., Atashpaz, S., Khani, S., and Omidi, Y., Rapid and Simple Methodology for Isolation of High Quality Genomic DNA from Coniferous Tissues (Taxus baccata), Mol. Biol. Rep., 2010, vol. 37, no. 2, pp. 833-837.
    • (2010) Mol. Biol. Rep. , vol.37 , Issue.2 , pp. 833-837
    • Barzegari, A.1    Vahed, S.Z.2    Atashpaz, S.3    Khani, S.4    Omidi, Y.5
  • 20
    • 24144449880 scopus 로고    scopus 로고
    • A Simple and Affordable Method for High-Throughput DNA Extraction from Animal Tissues for Polymerase Chain Reaction
    • Yue, G. H. and Orban, L., A Simple and Affordable Method for High-Throughput DNA Extraction from Animal Tissues for Polymerase Chain Reaction, Electrophoresis, 2005, vol. 26, no. 16, pp. 3081-3083.
    • (2005) Electrophoresis , vol.26 , Issue.16 , pp. 3081-3083
    • Yue, G.H.1    Orban, L.2
  • 21
    • 0028802008 scopus 로고
    • DNA Extraction Conditions from Porphyra perforata Using LiCl
    • Hong, Y., Kim, S., Polne-Fuller, M., and Gibor, A., DNA Extraction Conditions from Porphyra perforata Using LiCl, J. Appl. Phycol., 1995, vol. 7, no. 2, pp. 101-107.
    • (1995) J. Appl. Phycol. , vol.7 , Issue.2 , pp. 101-107
    • Hong, Y.1    Kim, S.2    Polne-Fuller, M.3    Gibor, A.4
  • 22
    • 0023101981 scopus 로고
    • A Procedure for Large-Scale Isolation of RNA-Free Plasmid and Phage DNA without the Use of RNase
    • Lev, Z., A Procedure for Large-Scale Isolation of RNA-Free Plasmid and Phage DNA without the Use of RNase, Anal. Biochem., 1987, vol. 160, no. 2, pp. 332-336.
    • (1987) Anal. Biochem. , vol.160 , Issue.2 , pp. 332-336
    • Lev, Z.1
  • 23
    • 37049021774 scopus 로고    scopus 로고
    • An Improved DNA Isolation Method and PCR Protocol for Efficient Detection of Multicomponents of Begomovirus in Legumes
    • Rouhibakhsh, A., Priya, J., Periasamy, M., Haq, Q. M. I., and Malathi, V. G., An Improved DNA Isolation Method and PCR Protocol for Efficient Detection of Multicomponents of Begomovirus in Legumes, J. Virol. Meth., 2008, vol. 147, no. 1, pp. 37-42.
    • (2008) J. Virol. Meth. , vol.147 , Issue.1 , pp. 37-42
    • Rouhibakhsh, A.1    Priya, J.2    Periasamy, M.3    Haq, Q.M.I.4    Malathi, V.G.5
  • 25
    • 12744281935 scopus 로고
    • The Extraction and Purification of Microbial DNA from Sediments
    • Ogram, A., Sayler, G. S., and Barkay, T., The Extraction and Purification of Microbial DNA from Sediments, J. Microbiol. Meth., 1987, vol. 7, no. 2-3, pp. 57-66.
    • (1987) J. Microbiol. Meth. , vol.7 , Issue.2-3 , pp. 57-66
    • Ogram, A.1    Sayler, G.S.2    Barkay, T.3
  • 26
    • 0027458468 scopus 로고
    • Rapid DNA Extraction Protocol from Soil for Polymerase Chain Reaction-Mediated Amplification
    • Smalla, K., Cresswell, N., Mendonca-Hagler, L. C., Wolters, A., and van Elsas, J. D., Rapid DNA Extraction Protocol from Soil for Polymerase Chain Reaction-Mediated Amplification, J. Appl. Bacteriol., 1993, vol. 74, no. 1, pp. 78-85.
    • (1993) J. Appl. Bacteriol. , vol.74 , Issue.1 , pp. 78-85
    • Smalla, K.1    Cresswell, N.2    Mendonca-Hagler, L.C.3    Wolters, A.4    van Elsas, J.D.5
  • 27
    • 0038696353 scopus 로고    scopus 로고
    • Comparison of Rapid Methods for the Extraction of Bacterial DNA from Colonic and Caecal Lumen Contents of the Pig
    • Anderson, K. L. and Lebepe-Mazur, S., Comparison of Rapid Methods for the Extraction of Bacterial DNA from Colonic and Caecal Lumen Contents of the Pig, J. Appl. Microbiol., 2003, vol. 94, no. 6, pp. 988-993.
    • (2003) J. Appl. Microbiol. , vol.94 , Issue.6 , pp. 988-993
    • Anderson, K.L.1    Lebepe-Mazur, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.