Phylogenetic diversity of gene sequences isolated from the rumen as analysed using a self-organizing map (SOM)

Journal of Applied Microbiology

Volumn 109, Issue 3, 2010, Pages 763-770

  Mitsumori, M ^a   Nakagawa, S ^b,d   Matsui, H ^c   Shinkai, T ^a   Takenaka, A ^a,e  

^a NATIONAL INSTITUTE OF LIVESTOCK AND GRASSLAND SCIENCE   (Japan)

^b Xanagen Inc   (Japan)

^c MIE UNIVERSITY   (Japan)

^d Japan Biological Informatics Consortium   (Japan)

^e JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

Author keywords

archaea; phylogenetic diversity; phylotype; rumen bacteria; self organizing map

Indexed keywords

BACTERIA; CONFORMAL MAPPING; DNA; DNA SEQUENCES; GENES; RNA;

ARCHAEON; GENE SEQUENCES; MAP METHODS; MICRO-ORGANISMS; PHYLOGENETIC DIVERSITY; PHYLOTYPES; QUERY SEQUENCE; RUMEN BACTERIA; SELF-ORGANIZING-MAPS; SMALL SUBUNITS;

SELF ORGANIZING MAPS;

RNA 16S; SMALL SUBUNIT RIBOSOMAL RNA;

ARTIFICIAL NEURAL NETWORK; FERMENTATION; GENETIC ANALYSIS; GENETIC STRUCTURE; GENETIC VARIATION; GENOME; MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; PHYLOGENETICS; RUMINANT; STOMACH CONTENT;

ARTICLE; DNA SEQUENCE; EUKARYOTE; NEIGHBOR JOINING METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; RUMINANT STOMACH;

BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 77955836327     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2010.04703.x     Document Type: Article

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