Identification and classification of genes regulated by phosphatidylinositol 3-kinase- and TRKB-mediated signalling pathways during neuronal differentiation in two subtypes of the human neuroblastoma cell line SH-SY5Y

BMC Research Notes

Volumn 1, Issue , 2008, Pages

  Nishida, Yuichiro ^a   Adati, Naoki ^a   Ozawa, Ritsuko ^a   Maeda, Aasami ^a   Sakaki, Yoshiyuki ^a   Takeda, Tadayuki ^a  

^a RIKEN   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77955818599     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-1-95     Document Type: Article

References (30)

1. Coordinate morphological and biochemical interconversion of human neuroblastoma cells. RA Ross BA Spengler JL Biedler, J Natl Cancer Inst 1983 71 741 747 6137586
2. Retinoic acid-induced differentiation of cultured human neuroblastoma cells: a comparison with phorbolester-induced differentiation. S Pahlman A-I Ruusala L Abrahmsson MEK Mattsson T Esscher, Cell Differ 1984 14 135 144 10.1016/0045-6039(84)90038-1 6467378
3. Differentiation and survival influences of growth factors in human neuroblastoma. S Pahlman JC Hoehner E Nanberg F Hedborg S Fagerstrom C Gestblom I Johansson U Larsson E Lavenius E Ortoft H Soderholm, Eur J Cancer 1995 31A 453 458 10.1016/0959-8049(95)00033-F 7576944
4. Tissue transglutaminase mediates activation of RhoA and MAP kinase pathways during retinoic acid-induced neuronal differentiation of SH-SY5Y cells. US Singh J Pan Y-L Kao S Joshi KL Young KM Baker, J Biol Chem 2003 278 391 399 10.1074/jbc.M206361200 12401808
5. Tissue transglutaminase is essential for neurite outgrowth in human neuroblastoma SH-SY5Y cells. J Tucholski M Lesort GVW Johnson, Neuroscience 2001 102 481 491 10.1016/S0306-4522(00)00482-6 11166134
6. Activation of the phosphatidylinositol 3-kinase/Akt signaling pathway by retinoic acid is required for neural differentiation of SH-SY5Y human neuroblastoma cells. G Lopez-Carballo L Moreno S Masia P Perez D Barettino, J Biol Chem 2002 277 25297 25304 10.1074/jbc.M201869200 12000752
7. Activation of Rac1 by phosphatidylinositol 3-kinase in vivo: role in activation of mitogen-activated protein kinase (MAPK) pathways and retinoic acid-induced neuronal differentiation of SH-SY5Y cells. J Pan Y-L Kao S Joshi S Jeetendran D DiPette US Singh, J Neurochem 2005 93 571 583 10.1111/j.1471-4159. 2005.03106.x 15836616
8. Extracellular-regulated kinases and phosphatidylinositol 3-kinase are involved in brain-derived neurotrophic factor-mediated survival and neuritogenesis of the neuroblastoma cell line SH-SY5Y. M Encinas M Iglesias N Llecha JX Comella, J Neurochem 1999 73 1409 1421 10.1046/j.1471-4159.1999. 0731409.x 10501184
9. Induction of TrkB by retinoic acid mediates biologic responsiveness to BDNF and differentiation of human neuroblastoma cells. DR Kaplan K Matsumoto E Lucarelli CJ Thiele, Neuron 1993 11 321 331 10.1016/0896-6273(93)90187-V 8394722
10. Sequential treatment of SH-SY5Y cells with retinoic acid and brain-derived neurotrophic factor gives rise to fully differentiated, neurotrophic factor-dependent human neuron-like cells. M Encinas M Iglesias Y Liu H Wang A Muhaisen V Cena C Gallego JX Comella, J Neurochem 2000 75 991 1003 10.1046/j.1471-4159.2000.0750991.x 10936180
11. Affymetrix Expression Analysis Technical Support. http://www.affymetrix. com/support/
12. BLAT-the BLAST-like alignment tool. WJ Kent, Genome Res 2002 12 656 664 11932250
13. UCSC Genome Bioinformatics. http://genome.ucsc.edu/
14. GEO Database. http://www.ncbi.nlm.nih.gov/geo/
15. Fibronectin and laminin elicit differential behaviors from SH-SY5Y growth cones contacting inhibitory chondroitin sulfate proteoglycans. DL Hynds DM Snow, J Neurosci Res 2001 66 630 642 10.1002/jnr.10020 11746383
16. Differential effects of staurosporine and retinoic acid on the vulnerability of the SH-SY5Y Neuroblastoma cells: involvement of Bcl-2 and p53 proteins. K Tieu DM Zuo PH Yu, J Neurosci Res 1999 58 426 435 10.1002/(SICI)1097-4547(19991101)58:3<426::AID-JNR83.0.CO;2-F 10518116
17. Morphology and growth tumorigenicity, and cytogenetics of human neuroblastoma cell in continuous culture. JL Biedler L Helson BA Spengler, Cancer Res 1973 33 2643 2652 4748425
18. S Draghici, Data Analysis Tools for DNA Microarrays Washington DC, Chapman & Hall/Crc 2003
19. TM4: a free, open-source system for microarray data management and analysis. AI Saeed V Sharov J White J Li W Liang N Bhagabati J Braisted M Klapa T Currier M Thiagarajan A Sturn M Snuffin A Rezantsev D Popov A Ryltsov E Kostukovich I Borisovsky Z Liu A Vinsavich V Trush J Quackenbush, Biotechniques 2003 34 374 378 12613259
20. Gene expression profiling reveals the profound upregulation of hypoxia-responsive genes in primary human astrocytes. SM Mense A Sengupta M Zhou C Lan G Bentsman DJ Volsky L Zhang, Physiol Genomics 2006 25 435 449 10.1152/physiolgenomics.00315.2005 16507782
21. The GO Ontology. http://www.geneontology.org/
22. NCBI, Entrez Gene. http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene
23. NCBI, Pub Med. http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed
24. Gene Cards. http://www.genecards.org/
25. Analysis of human TrkB gene genomic organization reveals novel TrkB isoforms, unusual gene length, and splicing mechanism. P Stoilov E Castren S Stamm, Biochem Biophys Res Commun 2002 290 1054 1065 10.1006/bbrc.2001.6301 11798182
26. The trkB tyrosine protein kinase gene codes for a second neurogenic receptor that lacks the catalytic kinase domain. R Klein D Conway LF Parada M Barbacid, Cell 1990 61 647 656 10.1016/0092-8674(90)90476-U 2160854
27. trkB, a neural receptor protein-tyrosine kinase: evidence for a full-length and two truncated receptors. DS Middlemas RA Lindberg T Hunter, Mol Cell Biol 1991 11 143 153 1846020
28. The mouse neurotrophin receptor trkB gene is transcribed from two different promoters. D Barettino PMG Pombo G Espliguero A Rodrigez-Pena, Biochim Biophys Acta 1999 1446 24 34 10395916
29. Cip1 promoters linking differentiation and cell cycle arrest in neuroblastoma cells. Y Liu M Encinas JX Comella M Aldea C Gallgo, Mol Cell Biol 2004 24 2662 2672 15024057 10.1128/MCB.24.7.2662-2672.2004 (Pubitemid 38381259)
30. Naturally occurring truncated trkB receptors have dominant inhibitory effects on brain-derived neurotrophic factor signaling. FF Eide ER Vining BL Eide K Zang X-Y Wang LF Reichardt, J Neurosci 1996 16 3123 3129 8627351