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Volumn 99, Issue 3, 2010, Pages 961-970

Optimizing methods to recover absolute FRET efficiency from immobilized single molecules

Author keywords

[No Author keywords available]

Indexed keywords

DLGH4 PROTEIN, RAT; DNA; IMMOBILIZED PROTEIN; MEMBRANE PROTEIN; MUTANT PROTEIN; SIGNAL PEPTIDE;

EID: 77955700423     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2010.04.063     Document Type: Article
Times cited : (86)

References (30)
  • 2
    • 0017795758 scopus 로고
    • Fluorescence energy transfer as a spectroscopic ruler
    • Stryer, L. 1978. Fluorescence energy transfer as a spectroscopic ruler. Annu. Rev. Biochem. 47:819-846.
    • (1978) Annu. Rev. Biochem. , vol.47 , pp. 819-846
    • Stryer, L.1
  • 4
    • 33751349660 scopus 로고    scopus 로고
    • Shot-noise limited single-molecule FRET histograms: Comparison between theory and experiments
    • Nir, E., X. Michalet, S. Weiss. 2006. Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments. J. Phys. Chem. B. 110:22103-22124.
    • (2006) J. Phys. Chem. B. , vol.110 , pp. 22103-22124
    • Nir, E.1    Michalet, X.2    Weiss, S.3
  • 5
    • 22144492905 scopus 로고    scopus 로고
    • Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation
    • Lee, N. K., A. N. Kapanidis, S. Weiss. 2005. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Biophys. J. 88:2939-2953.
    • (2005) Biophys. J. , vol.88 , pp. 2939-2953
    • Lee, N.K.1    Kapanidis, A.N.2    Weiss, S.3
  • 6
    • 0033444727 scopus 로고    scopus 로고
    • Ratiometric measurement and identification of single diffusing molecules
    • Dahan, M., A. A. Deniz, S. Weiss. 1999. Ratiometric measurement and identification of single diffusing molecules. Chem. Phys. 247: 85-106.
    • (1999) Chem. Phys. , vol.247 , pp. 85-106
    • Dahan, M.1    Deniz, A.A.2    Weiss, S.3
  • 7
    • 0033514435 scopus 로고    scopus 로고
    • Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism
    • Ha, T., A. Y. Ting, S. Weiss. 1999. Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism. Proc. Natl. Acad. Sci. USA. 96:893-898.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 893-898
    • Ha, T.1    Ting, A.Y.2    Weiss, S.3
  • 8
    • 65249185574 scopus 로고    scopus 로고
    • Interplay of α-synuclein binding and conformational switching probed by single-molecule fluorescence
    • Ferreon, A. C. M., Y. Gambin, A. A. Deniz. 2009. Interplay of α-synuclein binding and conformational switching probed by single-molecule fluorescence. Proc. Natl. Acad. Sci. USA. 106:5645-5650.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 5645-5650
    • Ferreon, A.C.M.1    Gambin, Y.2    Deniz, A.A.3
  • 9
    • 0037126290 scopus 로고    scopus 로고
    • Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy
    • Schuler, B., E. A. Lipman, and W. A. Eaton. 2002. Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy. Nature. 419:743-747.
    • (2002) Nature , vol.419 , pp. 743-747
    • Schuler, B.1    Lipman, E.A.2    Eaton, W.A.3
  • 10
    • 37649015345 scopus 로고    scopus 로고
    • Effect of flexibility and cis residues in single-molecule FRET studies of polyproline
    • Best, R. B., K. A. Merchant, W. A. Eaton. 2007. Effect of flexibility and cis residues in single-molecule FRET studies of polyproline. Proc. Natl. Acad. Sci. USA. 104:18964-18969.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 18964-18969
    • Best, R.B.1    Merchant, K.A.2    Eaton, W.A.3
  • 11
    • 33846839535 scopus 로고    scopus 로고
    • Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations
    • Merchant, K. A., R. B. Best, W. A. Eaton. 2007. Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations. Proc. Natl. Acad. Sci. USA. 104:1528-1533.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 1528-1533
    • Merchant, K.A.1    Best, R.B.2    Eaton, W.A.3
  • 12
    • 0035819204 scopus 로고    scopus 로고
    • Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy
    • Boukobza, E., A. Sonnenfeld, and G. Haran. 2001. Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy. J. Phys. Chem. B. 105:12165-12170.
    • (2001) J. Phys. Chem. B. , vol.105 , pp. 12165-12170
    • Boukobza, E.1    Sonnenfeld, A.2    Haran, G.3
  • 13
    • 0029987587 scopus 로고    scopus 로고
    • Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor
    • Ha, T., T. Enderle, S. Weiss. 1996. Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor. Proc. Natl. Acad. Sci. USA. 93:6264-6268.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 6264-6268
    • Ha, T.1    Enderle, T.2    Weiss, S.3
  • 14
    • 0033616580 scopus 로고    scopus 로고
    • Single-pair fluorescence resonance energy transfer on freely diffusing molecules: Observation of Förster distance dependence and subpopulations
    • Deniz, A. A., M. Dahan, P. G. Schultz. 1999. Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Förster distance dependence and subpopulations. Proc. Natl. Acad. Sci. USA. 96:3670-3675.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 3670-3675
    • Deniz, A.A.1    Dahan, M.2    Schultz, P.G.3
  • 15
    • 0036180593 scopus 로고    scopus 로고
    • Fluorescence resonance energy transfer (FRET) and competing processes in donor-acceptor substituted DNA strands: A comparative study of ensemble and single-molecule data
    • Dietrich, A., V. Buschmann, M. Sauer. 2002. Fluorescence resonance energy transfer (FRET) and competing processes in donor-acceptor substituted DNA strands: a comparative study of ensemble and single-molecule data. Rev. Mol. Biotechnol. 82:211-231.
    • (2002) Rev. Mol. Biotechnol. , vol.82 , pp. 211-231
    • Dietrich, A.1    Buschmann, V.2    Sauer, M.3
  • 16
    • 22944457862 scopus 로고    scopus 로고
    • Using fluorescence resonance energy transfer to measure distances along individual DNA molecules: Corrections due to nonideal transfer
    • Sabanayagam, C. R., J. S. Eid, and A. Meller. 2005. Using fluorescence resonance energy transfer to measure distances along individual DNA molecules: corrections due to nonideal transfer. J. Chem. Phys. 122:061103-061105.
    • (2005) J. Chem. Phys. , vol.122 , pp. 061103-061105
    • Sabanayagam, C.R.1    Eid, J.S.2    Meller, A.3
  • 17
    • 48249085467 scopus 로고    scopus 로고
    • Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids
    • Iqbal, A., S. Arslan, D. M. Lilley. 2008. Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids. Proc. Natl. Acad. Sci. USA. 105: 11176-11181.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 11176-11181
    • Iqbal, A.1    Arslan, S.2    Lilley, D.M.3
  • 19
    • 66549126814 scopus 로고    scopus 로고
    • Photophysics of backbone fluorescent DNA modifications: Reducing uncertainties in FRET
    • Ranjit, S., K. Gurunathan, and M. Levitus. 2009. Photophysics of backbone fluorescent DNA modifications: reducing uncertainties in FRET. J. Phys. Chem. B. 113:7861-7866.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 7861-7866
    • Ranjit, S.1    Gurunathan, K.2    Levitus, M.3
  • 20
    • 0346599879 scopus 로고
    • Rhodamine B and rhodamine 101 as reference substances for fluorescence quantum yield measurements
    • Karstens, T., and K. Kobs. 1980. Rhodamine B and rhodamine 101 as reference substances for fluorescence quantum yield measurements. J. Phys. Chem. 84:1871-1872.
    • (1980) J. Phys. Chem. , vol.84 , pp. 1871-1872
    • Karstens, T.1    Kobs, K.2
  • 21
    • 0033469230 scopus 로고    scopus 로고
    • Temporal fluctuations of fluorescence resonance energy transfer between two dyes conjugated to a single protein
    • Ha, T., A. Y. Ting, S. Weiss. 1999. Temporal fluctuations of fluorescence resonance energy transfer between two dyes conjugated to a single protein. Chem. Phys. 247:107-118.
    • (1999) Chem. Phys. , vol.247 , pp. 107-118
    • Ha, T.1    Ting, A.Y.2    Weiss, S.3
  • 22
    • 34248664689 scopus 로고    scopus 로고
    • Dynamic structural rearrangements between DNA binding modes of E. Coli SSB protein
    • Roy, R., A. G. Kozlov, T. Ha. 2007. Dynamic structural rearrangements between DNA binding modes of E. coli SSB protein. J. Mol. Biol. 369:1244-1257.
    • (2007) J. Mol. Biol. , vol.369 , pp. 1244-1257
    • Roy, R.1    Kozlov, A.G.2    Ha, T.3
  • 23
    • 33646416480 scopus 로고    scopus 로고
    • Quantitative single-molecule conformational distributions: A case study with poly-(L-proline)
    • Watkins, L. P., H. Chang, and H. Yang. 2006. Quantitative single-molecule conformational distributions: a case study with poly-(L-proline). J. Phys. Chem. A. 110:5191-5203.
    • (2006) J. Phys. Chem. A. , vol.110 , pp. 5191-5203
    • Watkins, L.P.1    Chang, H.2    Yang, H.3
  • 24
    • 0036177565 scopus 로고    scopus 로고
    • Kappa-squared: From nuisance to new sense
    • van der Meer, B. W. 2002. Kappa-squared: from nuisance to new sense. Rev. Mol. Biotechnol. 82:181-196.
    • (2002) Rev. Mol. Biotechnol. , vol.82 , pp. 181-196
    • Van Der Meer, B.W.1
  • 25
    • 56149121056 scopus 로고    scopus 로고
    • A nano-positioning system for macromolecular structural analysis
    • Muschielok, A., J. Andrecka, J. Michaelis. 2008. A nano-positioning system for macromolecular structural analysis. Nat. Methods. 5:965-971.
    • (2008) Nat. Methods. , vol.5 , pp. 965-971
    • Muschielok, A.1    Andrecka, J.2    Michaelis, J.3
  • 26
    • 0028884014 scopus 로고
    • Fluorescence resonance energy transfer spectroscopy is a reliable "ruler" for measuring structural changes in proteins. Dispelling the problem of the unknown orientation factor
    • dos Remedios, C. G., and P. D. J. Moens. 1995. Fluorescence resonance energy transfer spectroscopy is a reliable "ruler" for measuring structural changes in proteins. Dispelling the problem of the unknown orientation factor. J. Struct. Biol. 115:175-185.
    • (1995) J. Struct. Biol. , vol.115 , pp. 175-185
    • Dos Remedios, C.G.1    Moens, P.D.J.2
  • 27
    • 0033813064 scopus 로고    scopus 로고
    • Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy
    • Weiss, S. 2000. Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy. Nat. Struct. Mol. Biol. 7:724-729.
    • (2000) Nat. Struct. Mol. Biol. , vol.7 , pp. 724-729
    • Weiss, S.1
  • 28
    • 35548963855 scopus 로고    scopus 로고
    • Orientational and dynamical heterogeneity of rhodamine 6G terminally attached to a DNA helix revealed by NMR and single-molecule fluorescence spectroscopy
    • Neubauer, H., N. Gaiko, A. Volkmer. 2007. Orientational and dynamical heterogeneity of rhodamine 6G terminally attached to a DNA helix revealed by NMR and single-molecule fluorescence spectroscopy. J. Am. Chem. Soc. 129:12746-12755.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 12746-12755
    • Neubauer, H.1    Gaiko, N.2    Volkmer, A.3
  • 29
    • 62949168954 scopus 로고    scopus 로고
    • Probing complexes with single fluorophores: Factors contributing to dispersion of FRET in DNA/RNA duplexes
    • Cherny, D. I., I. C. Eperon, and C. R. Bagshaw. 2009. Probing complexes with single fluorophores: factors contributing to dispersion of FRET in DNA/RNA duplexes. Eur. Biophys. J. 38:395-405.
    • (2009) Eur. Biophys. J. , vol.38 , pp. 395-405
    • Cherny, D.I.1    Eperon, I.C.2    Bagshaw, C.R.3
  • 30
    • 85003238673 scopus 로고    scopus 로고
    • Photodestruction intermediates probed by an adjacent reporter molecule
    • Ha, T., and J. Xu. 2003. Photodestruction intermediates probed by an adjacent reporter molecule. Phys. Rev. Lett. 90:223002.
    • (2003) Phys. Rev. Lett. , vol.90 , pp. 223002
    • Ha, T.1    Xu, J.2


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