Photophysics of backbone fluorescent DNA modifications: Reducing uncertainties in FRET

Journal of Physical Chemistry B

Volumn 113, Issue 22, 2009, Pages 7861-7866

  Ranjit, Suman ^a   Gurunathan, Kaushik ^a   Levitus, Marcia ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENERGY TRANSFER; FLUORESCENCE; GENES; NUCLEIC ACIDS;

DNA INTERACTION; DNA MODIFICATION; DONOR-ACCEPTOR; DONOR-ACCEPTOR DISTANCE; DONOR-ACCEPTOR PAIRS; FLEXIBLE LINKERS; PHOTOPHYSICAL PROPERTIES; PHOTOPHYSICS; RELATIVE ORIENTATION; RESONANCE ENERGY TRANSFER; ROTATIONAL MOTION; ROTATIONAL RIGIDITY; SOURCES OF UNCERTAINTY;

UNCERTAINTY ANALYSIS;

EID: 66549126814     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp810842u     Document Type: Article

References (23)

1. Stryer, L.; Haugland, R. P. Proc. Natl, Acad. Sci. U.S.A. 1967, 58, 719.
2. Klostermeier, D.; Millar, D. P. Methods 2001, 23, 240.
3. Lilley, D. M. J.; Wilson, T. J. Curr. Opin. Chem. Biol. 2000, 4, 507.
4. Valeur, B. Molecular Fluorescence: Principles and Applications; Wiley-VCH: Weinheim, Germany, 2001.
5. Dale, R. E.; Eisinger, J.; Blumberg, W. E. Biophys. J. 1979, 26, 161.
6. Dosremedios, C G.; Moens, P. D. J. J. Struct. Biol, 1995, 115, 175.
7. van. der Meer, B. W. Rev. Mol, Biotechnol. 2002, 82, 181.
8. VanBeek, D. B.; Zwier, M. C; Shorb, J. M.; Krueger, B. P. Biophys. J. 2007, 92, 4168.
9. Joo, C; Balci, H.; Ishitsuka, Y.; Buranachai, C; Ha, T. Annu. Rev. Biochem. 2008, 77, 51.
10. Sanborn, M. E.; Connolly, B. K.; Gurunathan, K.; .Levitus, M. J. Phys. Chem. B 2007, 111, 11064.
11. Dolghih, E.; Roitberg, A. E.; Krause, J. L. J. Photochem. Photobiol, A 2007, 190, 321.
12. Unruh, J. R.; Gokulrangan, G.; Lushington, G. H.; Johnson, C K.; Wilson, G. S. Biophys. J. 2005, 88, 3455.
13. Vamosi, G.; Gohlke, C; Clegg, R. M. Biophys. J. 1996, 71, 972.
14. Magde, D.; Brannon, J. H.; Cremers, T. L.; Olmsted, J. J Phys. Chem. 1979, 83, 696.
15. Ramreddy, T.; Rao, B. J.; Krishnamoorthy, G. J. Phys. Chem. B 2007, 111, 5757.
16. Levitus, M.; Negri, R. M.; Aramendia, P. F. J. Phys. Chem. 1995, 99, 14231.
17. Ishii, Y.; Yoshida, T.; Funatsu, T.; Wazawa, T.; Yanagida, T. Chem. Phys. 1999, 247, 163.
18. Zuker, M. Nucleic Acids Res. 2003, 31, 3406.
19. Deniz, A. A.; Dahan, M.; Grunwell, J. R.; Ha, T. J.; Faulhaber, A. E.; Chemla, D. S.; Weiss, S.; Schultz, P. G. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 3670.
20. Lewis, F. D.; Zhang, L. G.; Zuo, X. B. J. Am. Chem. Soc. 2005, 127, 10002.
21. Iqbal, A.; Arslan, S.; Okumus, B.; Wilson, T. J.; Giraud, G.; Norman, Ö. G.; Ha, T.; Lilley, D. M. J. Proc. Natl. Acad Sci. U.S.A. 2008, 105, 11176.
22. Iqbal, A.; Wang, L.; Thompson, K. C; Lilley, D. M. J.; Norman, D. G. Biochemistry 2008, 47, 7857.
23. Norman, D. G.; Grainger, R. J.; Uhrin, D.; Lilley, D. M. J. Biochemistry 2000, 39, 6317.