The chromosomal localization, expression pattern and polymorphism analysis of porcine FSCN1 gene differently expressed from LongSAGE library

Molecular Biology Reports

Volumn 37, Issue 5, 2010, Pages 2361-2367

  Tang, Zh L ^a   Zhang, X J ^a   Yang, Sh L ^a   Mu, Y L ^a   Cui, W T ^a   Ao, H ^a   Li, K ^a  

^a AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

Author keywords

Differential expression; FSCN1; Growth; Muscle development; Pigs

Indexed keywords

CELL PROTEIN; FASCIN HOMOLOGUE 1 PROTEIN; GENOMIC DNA; MESSENGER RNA; UNCLASSIFIED DRUG;

AGE DISTRIBUTION; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BIRTH; BRAIN; CELL ADHESION; CELL INTERACTION; CELL MOTILITY; CHROMOSOMAL LOCALIZATION; CONCEPTION; CONTROLLED STUDY; DOWN REGULATION; FEMALE; GENE EXPRESSION; GENE FUNCTION; GENE LIBRARY; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC DIFFERENCE; GENETIC IDENTIFICATION; GENETIC POLYMORPHISM; MOLECULAR CLONING; MUSCLE DEVELOPMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PERINATAL PERIOD; SINGLE NUCLEOTIDE POLYMORPHISM; SKELETAL MUSCLE; SWINE;

ANIMALS; BASE SEQUENCE; BREEDING; CARRIER PROTEINS; CHROMOSOMES, MAMMALIAN; EXONS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FREQUENCY; GENE LIBRARY; GENOME; INTRONS; MEAT; MICROFILAMENT PROTEINS; MOLECULAR SEQUENCE DATA; MUSCLE DEVELOPMENT; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT, HERITABLE; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SUS SCROFA;

SUIDAE; SUS;

EID: 77955656358     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-009-9742-9     Document Type: Article

References (26)

1. N Kureishy V Sapountzi S Prag N Anilkumar JC Adams 2002 Fascins, and their roles in cell structure and function Bioessays 24 4 350 361 10.1002/bies.10070 1:CAS:528:DC%2BD38XjsFWjt7w%3D 11948621 (Pubitemid 34305690)
2. RA Edwards H Herrera-Sosa J Otto J Bryan 1995 Cloning and expression of a murine fascin homolog from mouse brain J Biol Chem 270 18 10764 10770 10.1074/jbc.270.18.10764 1:CAS:528:DyaK2MXlsFKktbc%3D 7738015
3. Y Saishin S Shimada H Morimura K Sato I Ishimoto Y Tano M Tohyama 1997 Isolation of a cDNA encoding a photoreceptor cell-specific actin-bundling protein: retinal fascin FEBS Lett 414 2 381 386 10.1016/S0014-5793(97)01021-1 1:CAS:528:DyaK2sXlslChtb8%3D 9315724 (Pubitemid 27389400)
4. B Tubb DJ Mulholland W Vogl ZJ Lan C Niederberger A Cooney J Bryan 2002 Testis fascin (FSCN3): a novel paralog of the actin-bundling protein fascin expressed specifically in the elongate spermatid head Exp Cell Res 275 1 92 109 10.1006/excr.2002.5486 1:CAS:528:DC%2BD38XisVamtbY%3D 11925108
5. YS Aratyn TE Schaus EW Taylor GG Borisy 2007 Intrinsic dynamic behavior of fascin in filopodia Mol Biol Cell 18 10 3928 3940 10.1091/mbc.E07-04-0346 1:CAS:528:DC%2BD2sXhtFCnsLnI 17671164 (Pubitemid 47519485)
6. J Bryan R Edwards P Matsudaira J Otto J Wulfkuhle 1993 Fascin, an echinoid actin-bundling protein, is a homolog of the Drosophila singed gene product Proc Natl Acad Sci USA 90 19 9115 9119 10.1073/pnas.90.19.9115 1:CAS:528:DyaK3sXms1Cruro%3D 8415664 (Pubitemid 23306462)
7. WC Tsai YC Chao LF Sheu JL Chang S Nieh JS Jin 2007 Overexpression of fascin-1 in advanced colorectal adenocarcinoma: tissue microarray analysis of immunostaining scores with clinicopathological parameters Dis Markers 23 3 153 160 1:CAS:528:DC%2BD2sXksVCjtLc%3D 17473384
8. WC Tsai JS Jin WK Chang DC Chan MK Yeh SC Cherng LF Lin LF Sheu YC Chao 2007 Association of cortactin and fascin-1 expression in gastric adenocarcinoma: correlation with clinicopathological parameters J Histochem Cytochem 55 9 955 962 10.1369/jhc.7A7235.2007 1:CAS:528:DC%2BD2sXpslChs7g%3D 17510372 (Pubitemid 47293841)
9. A De Arcangelis E Georges-Labouesse JC Adams 2004 Expression of fascin-1, the gene encoding the actin-bundling protein fascin-1, during mouse embryogenesis Gene Expr Patterns 4 6 637 643 10.1016/j.modgep.2004.04.012 15465486 (Pubitemid 39307527)
10. EH Chen EN Olson 2004 Towards a molecular pathway for myoblast fusion in Drosophila Trends Cell Biol 14 8 452 460 10.1016/j.tcb.2004.07.008 1:CAS:528:DC%2BD2cXmsl2itr8%3D 15308212 (Pubitemid 39092703)
11. C Rehfeldt I Fiedler G Dietl K Ender 2000 Myogenesis and postnatal skeletal muscle cell growth as influenced by selection Livestock Prod Sci 66 2 177 188 10.1016/S0301-6226(00)00225-6
12. PM Wigmore NC Stickland 1983 Muscle development in large and small pig fetuses J Anat 137 235 245 6630038
13. L Lefaucheur P Ecolan 2005 Pattern of muscle fiber formation in large white and meishan pigs Arch Tierz Dummerstorf 48 Special Issue 117 122
14. Rehfeldt C, Fiedler I, Stickland NC (2004) Number and size of muscle fibres in relation to meat production. In: te Pas MFW, Haagsman HP, Everts ME (eds) Muscle development of livestock animals: physiology, genetics, and meat quality. CAB Int, Wallingford, pp 1-37
15. Z Tang Y Li P Wan X Li S Zhao B Liu B Fan M Zhu M Yu K Li 2007 LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs Genome Biol 8 6 R115 10.1186/gb-2007-8-6-r115 17573972 (Pubitemid 351903167)
16. J Chen M Sun S Lee G Zhou JD Rowley SM Wang 2002 Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags Proc Natl Acad Sci USA 99 12257 12262 10.1073/pnas.192436499 1:CAS:528: DC%2BD38XntlCks7s%3D 12213963
17. ZL Tang Y Li SH Zhao B Liu B Fan K Li 2007 A modified GLGI method for identificationof novel porcine genes from long serial analysis of gene expression tags Chin J Agric Biotechnol 4 2 111 115 10.1017/S1479236207001519 1:CAS:528:DC%2BD2sXhtFyjt7rE (Pubitemid 47219962)
18. HL Wang H Wang ZM Zhu CF Wang MJ Zhu L de Mo SL Yang K Li 2006 Subcellular localization, expression patterns, SNPs and association analyses of the porcine HUMMLC2B gene Mol Genet Genomics 276 3 264 272 10.1007/s00438-006- 0142-8 1:CAS:528:DC%2BD28Xotlajurg%3D 16802157 (Pubitemid 44268036)
19. M Yerle P Pinton A Robic A Alfonso Y Palvadeau C Delcros R Hawken L Alexander C Beattie L Schook D Milan J Gellin 1998 Construction of a whole-genome radiation hybrid panel for high-resolution gene mapping in pigs Cytogenet Cell Genet 82 3-4 182 188 10.1159/000015095 1:CAS:528: DyaK1MXkslyqtQ%3D%3D 9858812
20. D Milan R Hawken C Cabau S Leroux C Genet Y Lahbib G Tosser A Robic F Hatey L Alexander C Beattie L Schook M Yerle J Gellin 2000 IMpRH server: an RH mapping server available on the web Bioinformatics 16 6 558 559 10.1093/bioinformatics/16.6.558 1:CAS:528:DC%2BD3cXnsVelsbk%3D 10980153
21. KJ Livak TD Schmittgen 2001 Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method Methods 25 4 402 408 10.1006/meth.2001.1262 1:CAS:528:DC%2BD38XhtFelt7s%3D 11846609 (Pubitemid 34164012)
22. GJ Schaaf JM Ruijter F van Ruissen DA Zwijnenburg R Waaijer LJ Valentijn J Benit-Deekman AH van Kampen F Baas M Kool 2005 Full transcriptome analysis of rhabdomyosarcoma, normal, and fetal skeletal muscle: statistical comparison of multiple SAGE libraries FASEB J 19 3 404 406 1:CAS:528:DC%2BD2MXit1Klu78%3D 15629888
23. F Megiorni P Indovina B Mora MC Mazzilli 2005 Minor expression of fascin-1 gene (FSCN1) in NTera2 cells depleted of CREB-binding protein Neurosci Lett 381 1-2 169 174 10.1016/j.neulet.2005.02.027 1:CAS:528:DC%2BD2MXktVOmuro%3D 15882811 (Pubitemid 40693163)
24. G Chen FR Zhang J Ren LH Tao ZY Shen Z Lv SJ Yu BF Dong LY Xu EM Li 2008 Expression of fascin in thyroid neoplasms: a novel diagnostic marker J Cancer Res Clin Oncol 134 9 947 951 10.1007/s00432-008-0374-6 1:CAS:528: DC%2BD1cXps12msro%3D 18343949
25. FR Zhang LH Tao ZY Shen Z Lv LY Xu EM Li 2008 Fascin expression in human embryonic, fetal, and normal adult tissue J Histochem Cytochem 56 2 193 199 10.1369/jhc.7A7353.2007 1:CAS:528:DC%2BD1cXhtlWgtro%3D 17998567 (Pubitemid 351170971)
26. M Nii T Hayashi S Mikawa F Tani A Niki N Mori Y Uchida N Fujishima-Kanaya M Komatsu T Awata 2005 Quantitative trait loci mapping for meat quality and muscle fiber traits in a Japanese wild boar × large white intercross Anim Sci 83 308 315 1:CAS:528:DC%2BD2MXhtVSqurw%3D