A modified GLGI method for identification of novel porcine genes from long serial analysis of gene expression tags

Chinese Journal of Agricultural Biotechnology

Volumn 4, Issue 2, 2007, Pages 111-115

  Zhong Lin, Tang ^a,b   Yong, Li ^a   Shu Hong, Zhao ^a   Bang, Liu ^a   Bin, Fan ^a   Kui, Li ^a,b  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

GLGI modification; Long serial analysis of gene expression tag; Novel gene identification

Indexed keywords

ESCHERICHIA COLI; SUS;

EID: 34547697074     PISSN: 14792362     EISSN: 14792370     Source Type: Journal    
DOI: 10.1017/S1479236207001519     Document Type: Article

References (19)

1. Bishop JO, Morton JG, Rosbach M and Richardson M (1974) Three abundance classes in HeLa cell messenger RNA. Nature 250(463): 199-204.
2. Boon WM, Beissbarth T, Hyde L, et al. (2004) A comparative analysis of transcribed genes in the mouse hypothalamus and neocortex reveals chromosomal clustering. Proceedings of the National Academy of Sciences of the USA 101(41): 14942-14977.
3. Chen JJ, Rowley JD and Wang SM (2000) Generation of longer cDNA fragments from serial analysis of gene expression tags for gene identification. Proceedings of the National Academy of Sciences of the USA 97(1): 349-353.
4. Chen JJ, Lee S, Zhou GL and Wang SM (2002a) High-throughput GLGI procedure for converting a large number of serial analyses of gene expression tag sequences into 3′ complementary DNAs. Gene, Chromosomes and Cancer 33(3): 252-261.
5. Chen JJ, Sun M, Lee S, Zhou GL, Rowley JD and Wang SM (2002b) Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags. Proceedings of the National Academy of Sciences of the USA 99(19): 12257-12262.
6. Halaschek-Wiener J, Khattra JS, McKay S, et al. (2005) Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression. Genome Research 15(5): 603-615.
7. + myeloid progenitor cells. Proceedings of the National Academy of Sciences of the USA 98(6): 3340-3345.
8. Matsumura H, Reich S, Ito A, et al. (2003) Gene expression analysis of plant host-pathogen interactions by SuperSAGE. Proceedings of the National Academy of Sciences of the USA 100(26): 15718-15723.
9. Ryu EJ, Angelastro JM and Greene LA (2005) Analysis of gene expression changes in a cellular model of Parkinson disease. Neurobiology of Disease 18(1): 54-75.
10. Saha S, Sparks AB, Rago C, et al. (2002) Using the transcriptome to annotate the genome. Nature Biotechnology 20(5): 508-512.
11. Siddiqui AS, Khattra J, Delaney AD, et al. (2005) A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells. Proceedings of the National Academy of USA 102(51): 18485-18490.
12. Sun M, Zhou GL, Lee S, Chen JJ, Shi RZ and Wang SM (2004) SAGE is far more sensitive than EST for detecting lowabundance transcripts. BMC Genomic 5(1): 1.
13. Tang ZL, Li Y, Li K, et al. (2007) Long SAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs. Genome Biology 8(6): R115.
14. Velculesscu VE, Zhong L, Vogelstein B and Kinzler KW (1995) Serial analysis of gene expression. Science 270(5235): 484-487.
15. Velculescu VE, Zhang L, Zhou W, et al. (1997) Characterization of the yeast transcriptome. Cell 88(2): 243-251.
16. Wahl MB, Caldwell RB, Kierzek AM, et al. (2004) Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line. BMC Genomics 5(1): 98.
17. Wang SM, Fears, SC, Zhang L, Chen JJ and Rowley JD (2000) Screening poly(dA/dT)-cDNAs for gene identification. Proceedings of the National Academy of Sciences of the USA 97(8): 4162-4167.
18. Yamashita T, Hashimoto S, Kaneko S, et al. (2000) Comprehensive gene expression profile of a normal human liver. Biochemical and Biophysical Research Communications 269(1): 110-116.
19. Zhang L, Zhou W, Velculescu VE, et al. (1997) Gene expression profiles in normal and cancer cells. Science 276(5316): 1268-1272.