Characterization of a 24-kb plasmid pCGR2 newly isolated from Corynebacterium glutamicum

Applied Microbiology and Biotechnology

Volumn 87, Issue 5, 2010, Pages 1855-1866

  Tsuchida, Yoshiki ^a,b   Kimura, Sakurako ^a   Suzuki, Nobuaki ^a   Inui, Masayuki ^a   Yukawa, Hideaki ^a  

^a RESEARCH INSTITUTE OF INNOVATIVE TECHNOLOGY FOR THE EARTH   (Japan)

^b HONDA R AND D CO LTD   (Japan)

Author keywords

C. glutamicum; Copy number; Partitioning genes; pCG1 family; Plasmid; Shuttle vector

Indexed keywords

AMINO ACID SEQUENCE; AUTONOMOUS REPLICATION; COPY NUMBER; CORYNEBACTERIUM GLUTAMICUM; GENE PRODUCTS; OPEN READING FRAME; PARTITIONING GENES; SELECTIVE PRESSURE; SEQUENCE SIMILARITY; SHUTTLE VECTOR;

AMINO ACIDS; MICROBIOLOGY; ORGANIC ACIDS; RNA;

GENE EXPRESSION;

BACTERIAL ENZYME; REPLICASE A; UNCLASSIFIED DRUG; BACTERIAL DNA;

AMINO ACID; BACTERIUM; GENE EXPRESSION; GENETIC ANALYSIS; PLASMID;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATION; CONTROLLED STUDY; COPY NUMBER VARIATION; CORYNEBACTERIUM GLUTAMICUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PLASMID; CHEMISTRY; DNA REPLICATION; DNA SEQUENCE; GENE DELETION; GENETICS; GENOMIC INSTABILITY; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; SEQUENCE HOMOLOGY;

BASE SEQUENCE; CORYNEBACTERIUM GLUTAMICUM; DNA REPLICATION; DNA, BACTERIAL; GENE DELETION; GENOMIC INSTABILITY; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLASMIDS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

CORYNEBACTERIUM GLUTAMICUM;

EID: 77955560481     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2701-5     Document Type: Article

References (29)

1. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410 1:CAS:528:DyaK3MXitVGmsA%3D%3D
2. WE Bentley DS Kompala 1989 A novel structured kinetic modeling approach for the analysis of plasmid instability in recombinant bacterial cultures Biotechnol Bioeng 33 49 61 10.1002/bit.260330108 1:CAS:528:DyaL1MXlsF2mtw%3D%3D (Pubitemid 19010125)
3. JY Bouet K Nordström D Lane 2007 Plasmid partition and incompatibility-the focus shifts Mol Microbiol 65 1405 1414 10.1111/j.1365-2958. 2007.05882.x 1:CAS:528:DC%2BD2sXhtFSjsr7F (Pubitemid 47347831)
4. JK Deb N Nath 1999 Plasmids of corynebacteria FEMS Microbiol Lett 175 11 20 10.1111/j.1574-6968.1999.tb13596.x 1:CAS:528:DyaK1MXjslegtLw%3D
5. AI Derman G Lim-Fong J Pogliano 2008 Intracellular mobility of plasmid DNA is limited by the ParA family of partitioning systems Mol Microbiol 67 935 946 10.1111/j.1365-2958.2007.06066.x 1:CAS:528:DC%2BD1cXis12nsLc%3D (Pubitemid 351207325)
6. C Fernandez-Gonzalez RF Cadenas MF Noirot-Gros JF Martin JA Gil 1994 Characterization of a region of plasmid pBL1 of Brevibaccterium lactofermentum involved in replication via the rolling circle model J Bacteriol 176 3154 3161 1:CAS:528:DyaK2cXltVWjtL0%3D
7. K Friehs 2004 Plasmid copy number and plasmid stability Adv Biochem Eng Biotechnol 86 47 82 1:CAS:528:DC%2BD2cXjs1WmsL4%3D
8. D Goyal M Wachi N Kijima M Kobayashi H Yukawa K Nagai 1996 A cryptic plasmid pBL1 from Brevibacterium lactofermentum causes growth inhibition and filamentation in Escherichia coli Plasmid 36 62 66 10.1006/plas.1996.0033 1:CAS:528:DyaK28XntVyrsbw%3D (Pubitemid 26397041)
9. TV Ilyina EV Koonin 1992 Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria Nucleic Acids Res 20 3279 3285 10.1093/nar/20.13.3279 1:CAS:528:DyaK38Xlt1Krsrk%3D
10. M Inui H Kawaguchi S Murakami A Vertès H Yukawa 2004 Metabolic engineering of Corynebacterium glutamicum for fuel ethanol production under oxygen-deprivation conditions J Mol Microbiol Biotechnol 8 243 254 10.1159/000086705 (Pubitemid 41368969)
11. Y Kikuchi M Date K Yokoyama Y Umezawa H Matsui 2003 Secretion of active-form Streptoverticillium mobaraense transglutaminase by Corynebacterium glutamicum: processing of the pro-transglutaminase by a cosecreted subtilisin-like protease from Streptomyces albogriseolus Appl Environ Microbiol 69 358 366 10.1128/AEM.69.1.358-366.2003 1:CAS:528:DC%2BD3sXkvValtA%3D%3D (Pubitemid 36077496)
12. S Kinoshita S Udaka M Shimonō 1957 Studies on the amino acid fermentation. Part I. Production of L-glutamic acid by various microorganisms J Gen Appl Microbiol 3 193 205 10.2323/jgam.3.193 1:CAS:528:DyaG1MXhsl2ntg%3D%3D
13. C Lee J Kim SG Shin S Hwang 2006 Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli J Biotechnol 123 273 280 10.1016/j.jbiotec.2005.11.014 1:CAS:528:DC%2BD28XksVais70%3D (Pubitemid 44294582)
14. J Nešvera J Hochmannová M Pátek 1998 An integron of class 1 is present on the plasmid pCG4 from gram-positive bacterium Corynebacterium glutamicum FEMS Microbiol Lett 169 391 395 10.1111/j.1574-6968. 1998.tb13345.x
15. S Okino M Inui H Yukawa 2005 Production of organic acids by Corynebacterium glutamicum under oxygen deprivation Appl Microbiol Biotechnol 68 475 480 10.1007/s00253-005-1900-y 1:CAS:528:DC%2BD2MXhtFansL7P (Pubitemid 41549991)
16. S Okino M Suda K Fujikura M Inui H Yukawa 2008 Production of D-lactic acid by Corynebacterium glutamicum under oxygen deprivation Appl Microbiol Biotechnol 78 449 454 10.1007/s00253-007-1336-7 1:CAS:528:DC%2BD1cXhvVylu7w%3D
17. S Okino R Noburyu M Suda T Jojima M Inui H Yukawa 2008 An efficient succinic acid production process in a metabolically engineered Corynebacterium glutamicum strain Appl Microbiol Biotechnol 81 459 464 10.1007/s00253-008-1668-y 1:CAS:528:DC%2BD1cXhtlyjt77O
18. S Rozen H Skaletsky 2000 Primer3 on the WWW for general users and for biologist programmers Meth Mol Biol 132 365 386 1:CAS:528:DyaK1MXmslKqsbo%3D
19. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, New York
20. G Solar R Giraldo MJ Ruiz-Echevarría M Espinosa R Díaz-Orejas 1998 Replication and control of circular bacterial plasmids Microbiol Mol Biol Rev 62 434 464
21. Y Takeda M Fujii Y Nakajoh T Nishimura S Isshiki 1990 Isolation of a tetracycline resistance plasmid from a glutamate-producing corynebacterium, Corynebacterium melassecola J Ferment Bioeng 70 177 179 10.1016/0922-338X(90) 90180-5 1:CAS:528:DyaK3cXmtFSis78%3D (Pubitemid 20361877)
22. A Tauch S Götker A Pühler J Kalinowski G Thierbach 2002 The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100 Plasmid 48 117 129 10.1016/S0147-619X(02)00120-8 1:CAS:528:DC%2BD38XnsVeru74%3D (Pubitemid 35300803)
23. A Tauch A Pühler J Kalinowski G Thierbach 2003 Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics J Biotechnol 104 27 40 10.1016/S0168-1656(03)00157-3 1:CAS:528:DC%2BD3sXmslensrc%3D (Pubitemid 37011346)
24. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
25. Y Tsuchida S Kimura N Suzuki M Inui H Yukawa 2009 Characterization of a new 2.4-kb plasmid of Corynebacterium casei and development of stable corynebacterial cloning vector Appl Microbiol Biotechnol 81 1107 1115 10.1007/s00253-008-1746-1 1:CAS:528:DC%2BD1cXhsFarsrrP
26. T Venkova M Pátek J Nešvera 2001 Identification of a novel gene involved in stable maintenance of plasmid pGA1 from Corynebacterium glutamicum Plasmid 46 153 162 10.1006/plas.2001.1536 1:CAS:528: DC%2BD3MXovFWisL8%3D (Pubitemid 34017055)
27. T Venkova-Canova M Pátek J Nešvera 2003 Control of rep gene expression in plasmid pGA1 from Corynebacterium glutamicum J Bacteriol 185 2402 2409 10.1128/JB.185.8.2402-2409.2003 1:CAS:528:DC%2BD3sXivFKrsr0%3D (Pubitemid 36417963)
28. AA Vertès M Inui H Yukawa 2005 Manipulating Corynebacteria, from individual genes to chromosomes Appl Environ Microbiol 71 7633 7642 10.1128/AEM.71.12.7633-7642.2005 (Pubitemid 41803883)
29. H Yukawa CA Omumasaba H Nonaka P Kós N Okai N Suzuki M Suda Y Tsuge J Watanabe Y Ideda AA Vertès M Inui 2007 Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R Microbiology 153 1042 1058 10.1099/mic.0.2006/003657-0 1:CAS:528: DC%2BD2sXkvVemsrg%3D (Pubitemid 46605802)