-
1
-
-
0002344794
-
Bootstrap Methods: Another Look at the Jackknife
-
10.1214/aos/1176344552
-
Bootstrap Methods: Another Look at the Jackknife. B Efron, Annals Stat 1979 7 1 26 10.1214/aos/1176344552
-
(1979)
Annals Stat
, vol.7
, pp. 1-26
-
-
Efron, B.1
-
2
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
10.2307/2408678
-
Confidence limits on phylogenies: An approach using the bootstrap. J Felsenstein, Evolution 1985 39 738 791 10.2307/2408678
-
(1985)
Evolution
, vol.39
, pp. 738-791
-
-
Felsenstein, J.1
-
3
-
-
0019951634
-
Testing the theory of evolution by comparing phylogenetic trees constructed from 5 different protein sequences
-
10.1038/297197a0. 7078635
-
Testing the theory of evolution by comparing phylogenetic trees constructed from 5 different protein sequences. D Penny LR Foulds MD Hendy, Nature 1982 297 197 200 10.1038/297197a0 7078635
-
(1982)
Nature
, vol.297
, pp. 197-200
-
-
Penny, D.1
Foulds, L.R.2
Hendy, M.D.3
-
4
-
-
0002410257
-
Parametric bootstrapping in molecular phylogenetics: Applications and performance. Molecular zoology: Advances, Strategies, and Protocols
-
New York, Wiley-Liss Inc Ferraris JD, Palumbi SR
-
Parametric bootstrapping in molecular phylogenetics: Applications and performance. Molecular zoology: Advances, Strategies, and Protocols. JP Huelsenbeck DM Hillis R Jones, Symposium held during Annual Meeting of the American Society of Zoologists, St. Louis, Missouri, USA, January 5-8, 1995 New York, Wiley-Liss Inc, Ferraris JD, Palumbi SR, 19 45
-
Symposium Held during Annual Meeting of the American Society of Zoologists, St. Louis, Missouri, USA, January 5-8, 1995
, pp. 19-45
-
-
Huelsenbeck, J.P.1
Hillis, D.M.2
Jones, R.3
-
5
-
-
0001336205
-
Phylogenetic inference
-
Sunderland, Massachusetts, Sinauer Associates Hillis DM, Moritz C, Mable BK
-
Phylogenetic inference. DL Swofford GJ Olson PJ Waddell DM Hillis, Molecular Systematics Sunderland, Massachusetts, Sinauer Associates, Hillis DM, Moritz C, Mable BK, 1996 407 514
-
(1996)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olson, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
6
-
-
0034351387
-
Likelihood-based tests of topologies in phylogenetics
-
10.1080/106351500750049752. 12116432
-
Likelihood-based tests of topologies in phylogenetics. N Goldman JP Anderson AG Rodrigo, Syst. Biol 2000 49 652 670 10.1080/106351500750049752 12116432
-
(2000)
Syst. Biol
, vol.49
, pp. 652-670
-
-
Goldman, N.1
Anderson, J.P.2
Rodrigo, A.G.3
-
7
-
-
0036173130
-
Automated ortholog inference from phylogenetic trees and calculation of orthology reliability
-
10.1093/bioinformatics/18.1.92. 11836216
-
Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. CEV Storm ELL Sonnhammer, Bioinformatics 2002 18 92 99 10.1093/bioinformatics/18.1.92 11836216
-
(2002)
Bioinformatics
, vol.18
, pp. 92-99
-
-
Storm, C.E.V.1
Sonnhammer, E.L.L.2
-
8
-
-
33747375683
-
Supertree bootstrapping methods for assessing phylogenetic variation among genes in genome-scale data sets
-
10.1080/10635150500541722. 16861207
-
Supertree bootstrapping methods for assessing phylogenetic variation among genes in genome-scale data sets. JG Burleigh AC Driskell MJ Sanderson, Syst. Biol 2006 55 426 440 10.1080/10635150500541722 16861207
-
(2006)
Syst. Biol
, vol.55
, pp. 426-440
-
-
Burleigh, J.G.1
Driskell, A.C.2
Sanderson, M.J.3
-
9
-
-
50949129519
-
Calculating bootstrap probabilities of phylogeny using multilocus sequence data
-
10.1093/molbev/msn043. 18281270
-
Calculating bootstrap probabilities of phylogeny using multilocus sequence data. TK Seo, Mol. Biol. Evol 2008 25 960 971 10.1093/molbev/msn043 18281270
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 960-971
-
-
Seo, T.K.1
-
10
-
-
57149094695
-
On the Distributions of Bootstrap Support and Posterior Distributions for a Star Tree
-
10.1080/10635150802302468. 18709598
-
On the Distributions of Bootstrap Support and Posterior Distributions for a Star Tree. E Susko, Syst. Biol 2008 57 602 612 10.1080/10635150802302468 18709598
-
(2008)
Syst. Biol
, vol.57
, pp. 602-612
-
-
Susko, E.1
-
11
-
-
0347532847
-
Applying the Bootstrap in Phylogeny Reconstruction
-
DOI 10.1214/ss/1063994980
-
Applying the Bootstrap in Phylogeny Reconstruction. PS Soltis DE Soltis, Statistical Science 2003 18 256 267 10.1214/ss/1063994980 (Pubitemid 37545098)
-
(2003)
Statistical Science
, vol.18
, Issue.2
, pp. 256-267
-
-
Soltis, P.S.1
Soltis, D.E.2
-
13
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
10.2307/2412923
-
Cases in which parsimony or compatibility methods will be positively misleading. J Felsenstein, Syst. Zool 1978 27 401 410 10.2307/2412923
-
(1978)
Syst. Zool
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
15
-
-
0024120079
-
Molecular phylogeny and evolution of primate mitochondrial DNA
-
3146681
-
Molecular phylogeny and evolution of primate mitochondrial DNA. K Hayasaka T Gojobori S Horai, Mol. Biol. Evol 1988 5 626 644 3146681
-
(1988)
Mol. Biol. Evol
, vol.5
, pp. 626-644
-
-
Hayasaka, K.1
Gojobori, T.2
Horai, S.3
-
16
-
-
0034053846
-
Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
-
10.1128/MMBR.64.1.202-236.2000. 10704480
-
Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. CR Woese G Olsen M Ibba D Söll, Microbiol. Mol. Biol. Rev 2000 64 202 236 10.1128/MMBR.64.1.202-236.2000 10704480
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, pp. 202-236
-
-
Woese, C.R.1
Olsen, G.2
Ibba, M.3
Söll, D.4
-
17
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
3447015
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees. N Saitou N Nei, Mol. Biol. Evol 1987 4 406 425 3447015
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, N.2
-
20
-
-
0029816997
-
Molecular phylogeny of macaques: Implications of nucleotide sequences from an 896-base pair region of mitochondrial DNA
-
8752012
-
Molecular phylogeny of macaques: implications of nucleotide sequences from an 896-base pair region of mitochondrial DNA. K Hayasaka K Fujii S Horai, Mol. Biol. Evol 1996 13 1044 1053 8752012
-
(1996)
Mol. Biol. Evol
, vol.13
, pp. 1044-1053
-
-
Hayasaka, K.1
Fujii, K.2
Horai, S.3
-
21
-
-
0002905557
-
Improving the additive tree representation of a given dissimilarity matrix using reticulations
-
Springer Kiers HAL, Rasson JP, Groenen PJF, Schader M
-
Improving the additive tree representation of a given dissimilarity matrix using reticulations. V Makarenkov P Legendre, Data analysis, Classification and Related Methods Springer, Kiers HAL, Rasson JP, Groenen PJF, Schader M, 2000 35 40
-
(2000)
Data Analysis, Classification and Related Methods
, pp. 35-40
-
-
Makarenkov, V.1
Legendre, P.2
-
22
-
-
3042738169
-
Mitochondrial evidence for the origin of hamadryas baboons
-
DOI 10.1016/j.ympev.2003.12.014, PII S1055790304000314
-
Mitochondrial evidence for the origin of hamadryas baboons. DE Wildman TJ Bergman A al-Aghbari KN Sterner, Mol. Phyl. Evol 2004 32 287 296 10.1016/j.ympev.2003.12.014 (Pubitemid 38851946)
-
(2004)
Molecular Phylogenetics and Evolution
, vol.32
, Issue.1
, pp. 287-296
-
-
Wildman, D.E.1
Bergman, T.J.2
Al-Aghbari, A.3
Sterner, K.N.4
Newman, T.K.5
Phillips-Conroy, J.E.6
Jolly, C.J.7
Disotell, T.R.8
-
23
-
-
56949097994
-
The complete mitochondrial genome of Macaca thibetana and a novel nuclear mitochondrial pseudogene
-
10.1016/j.gene.2008.10.010. 19013508
-
The complete mitochondrial genome of Macaca thibetana and a novel nuclear mitochondrial pseudogene. D Li L Fan B Zeng H Yin, Gene 2009 429 31 36 10.1016/j.gene.2008.10.010 19013508
-
(2009)
Gene
, vol.429
, pp. 31-36
-
-
Li, D.1
Fan, L.2
Zeng, B.3
Yin, H.4
-
24
-
-
77649259858
-
Inferring and validating horizontal gene transfer events using bipartition dissimilarity
-
10.1093/sysbio/syp103. 20525630
-
Inferring and validating horizontal gene transfer events using bipartition dissimilarity. A Boc H Philippe V Makarenkov, Syst. Biol 2010 59 195 211 10.1093/sysbio/syp103 20525630
-
(2010)
Syst. Biol
, vol.59
, pp. 195-211
-
-
Boc, A.1
Philippe, H.2
Makarenkov, V.3
-
25
-
-
0035339722
-
Modular construction for function of a ribonucleoprotein enzyme: The catalytic domain of Bacillus subtilis RNase P complexed with B.subtilis RNase P protein
-
10.1093/nar/29.9.1892. 11328872
-
Modular construction for function of a ribonucleoprotein enzyme: the catalytic domain of Bacillus subtilis RNase P complexed with B.subtilis RNase P protein. A Loria T Pan, Nucleic Acids Res 2001 29 1892 1897 10.1093/nar/29.9. 1892 11328872
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 1892-1897
-
-
Loria, A.1
Pan, T.2
-
26
-
-
0036330799
-
Functional Annotation of Class i Lysyl-tRNA Synthetase Phylogeny Indicates a Limited Role for Gene Transfer
-
10.1128/JB.184.16.4594-4600.2002. 12142429
-
Functional Annotation of Class I Lysyl-tRNA Synthetase Phylogeny Indicates a Limited Role for Gene Transfer. A Ambrogelly D Korencic M Ibba, J. Bacteriol 2002 184 4594 4600 10.1128/JB.184.16.4594-4600.2002 12142429
-
(2002)
J. Bacteriol
, vol.184
, pp. 4594-4600
-
-
Ambrogelly, A.1
Korencic, D.2
Ibba, M.3
-
28
-
-
4544298806
-
Genome-Wide Molecular Clock and Horizontal Gene Transfer in Bacterial Evolution
-
10.1128/JB.186.19.6575-6585.2004. 15375139
-
Genome-Wide Molecular Clock and Horizontal Gene Transfer in Bacterial Evolution. PS Novichkov MV Omelchenko MS Gelfand AA Mironov YI Wolf EV Koonin, J. Bacteriol 2004 186 6575 6585 10.1128/JB.186.19.6575-6585.2004 15375139
-
(2004)
J. Bacteriol
, vol.186
, pp. 6575-6585
-
-
Novichkov, P.S.1
Omelchenko, M.V.2
Gelfand, M.S.3
Mironov, A.A.4
Wolf, Y.I.5
Koonin, E.V.6
-
29
-
-
33644677385
-
Loss of Editing Activity during the Evolution of Mitochondrial Phenylalanyl-tRNA Synthetase
-
10.1074/jbc.M508281200. 16162501
-
Loss of Editing Activity during the Evolution of Mitochondrial Phenylalanyl-tRNA Synthetase. H Roy J Ling J Alfonzo M Ibba, J. Biol. Chem 2005 280 38186 38192 10.1074/jbc.M508281200 16162501
-
(2005)
J. Biol. Chem
, vol.280
, pp. 38186-38192
-
-
Roy, H.1
Ling, J.2
Alfonzo, J.3
Ibba, M.4
-
30
-
-
77649244518
-
New efficient algorithm for modeling partial and complete gene transfer scenarios
-
IFCS Batagelj V, Ferligoj A, Ziberna A. Series: Studies in Classification, Data Analysis, and Knowledge Organization, Springer Verlag
-
New efficient algorithm for modeling partial and complete gene transfer scenarios. V Makarenkov A Boc CF Delwiche AB Diallo H Philippe, Data Science and Classification IFCS, Batagelj V, Ferligoj A, Ziberna A, 2006 341 349 Series: Studies in Classification, Data Analysis, and Knowledge Organization, Springer Verlag
-
(2006)
Data Science and Classification
, pp. 341-349
-
-
Makarenkov, V.1
Boc, A.2
Delwiche, C.F.3
Diallo, A.B.4
Philippe, H.5
-
31
-
-
33645553754
-
Biofilm formation by mycoplasma species and its role in environmental persistence and survival
-
10.1099/mic.0.28604-0. 16549656
-
Biofilm formation by mycoplasma species and its role in environmental persistence and survival. L McAuliffe RJ Ellis K Miles RD Ayling RAJ Nicholas, Microbiology 2006 152 913 922 10.1099/mic.0.28604-0 16549656
-
(2006)
Microbiology
, vol.152
, pp. 913-922
-
-
McAuliffe, L.1
Ellis, R.J.2
Miles, K.3
Ayling, R.D.4
Nicholas, R.A.J.5
-
32
-
-
33748568146
-
Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes
-
10.1093/nar/gkl560. 16914447
-
Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes. H Simader M Hothorn C Kohler J Basquin G Simos D Suck, Nucleic Acids Res 2006 34 3968 3979 10.1093/nar/gkl560 16914447
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3968-3979
-
-
Simader, H.1
Hothorn, M.2
Kohler, C.3
Basquin, J.4
Simos, G.5
Suck, D.6
-
34
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version 3.2)
-
PHYLIP - Phylogeny Inference Package (Version 3.2). J Felsenstein, Cladistics 1989 5 164 166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
35
-
-
12044253190
-
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
-
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis. DM Hillis JJ Bull, Syst. Biol 1993 42 182 192
-
(1993)
Syst. Biol
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
36
-
-
12044259827
-
Is There Something Wrong with the Bootstrap on Phylogenies? A Reply to Hillis and Bull
-
Is There Something Wrong with the Bootstrap on Phylogenies? A Reply to Hillis and Bull. J Felsenstein H Kishino, Syst. Biol 1993 42 193 200
-
(1993)
Syst. Biol
, vol.42
, pp. 193-200
-
-
Felsenstein, J.1
Kishino, H.2
-
37
-
-
0029982849
-
Bootstrap confidence levels for phylogenetic trees
-
10.1073/pnas.93.23.13429. 8917608
-
Bootstrap confidence levels for phylogenetic trees. B Efron E Halloran S Holmes, PNAS 1996 93 13429 10.1073/pnas.93.23.13429 8917608
-
(1996)
PNAS
, vol.93
, pp. 13429
-
-
Efron, B.1
Halloran, E.2
Holmes, S.3
-
38
-
-
0032264630
-
The problem of regions
-
10.1214/aos/1024691353
-
The problem of regions. B Efron R Tibshirani, Ann. Statist 1998 26 1687 1718 10.1214/aos/1024691353
-
(1998)
Ann. Statist
, vol.26
, pp. 1687-1718
-
-
Efron, B.1
Tibshirani, R.2
-
39
-
-
72849135756
-
Diversity-based Weighting Schemes for Clustering Ensembles
-
Diversity-based Weighting Schemes for Clustering Ensembles. F Gullo A Tagarelli S Greco, 9th SIAM International Conference on Data Mining (SDM '09), Sparks, Nevada, USA, April 30-May 2, 2009 437 448
-
9th SIAM International Conference on Data Mining (SDM '09), Sparks, Nevada, USA, April 30-May 2, 2009
, pp. 437-448
-
-
Gullo, F.1
Tagarelli, A.2
Greco, S.3
-
40
-
-
1942517297
-
Random Projections for High Dimensional Data Clustering: A Cluster Ensemble Approach
-
Washington, D.C., AAAI Press, USA Fawcett T, Mishra N
-
Random Projections for High Dimensional Data Clustering: A Cluster Ensemble Approach. X Fern C Brodley, Proc. Int. Conf. on Machine Learning (ICML) Washington, D.C., AAAI Press, USA, Fawcett T, Mishra N, 2003 186 193
-
(2003)
Proc. Int. Conf. on Machine Learning (ICML)
, pp. 186-193
-
-
Fern, X.1
Brodley, C.2
-
41
-
-
15744388753
-
Using Diversity in Cluster Ensembles
-
Using Diversity in Cluster Ensembles. LI Kuncheva ST Hadjitodorov, Proc. IEEE Int. Conf. on Systems, Man and Cybernetics (SMC), The Hague, The Netherlands 2004 2 1214 1219
-
(2004)
Proc. IEEE Int. Conf. on Systems, Man and Cybernetics (SMC), the Hague, the Netherlands
, vol.2
, pp. 1214-1219
-
-
Kuncheva, L.I.1
Hadjitodorov, S.T.2
-
43
-
-
0031513152
-
The Average Consensus Procedure: Combination of Weighted Trees Containing Identical or Overlapping Sets of Taxa
-
The Average Consensus Procedure: Combination of Weighted Trees Containing Identical or Overlapping Sets of Objects. FJ Lapointe G Cucumel, Syst. Biol 1997 46 306 312 (Pubitemid 127092068)
-
(1997)
Systematic Biology
, vol.46
, Issue.2
, pp. 306-312
-
-
Lapointe, F.-J.1
Cucumel, G.2
-
44
-
-
0030311386
-
Matrix Representation of Trees, Redundancy, and Weighting
-
Matrix Representation of Trees, Redundancy, and Weighting. F Ronquist, Syst. Biol 1996 45 247 253
-
(1996)
Syst. Biol
, vol.45
, pp. 247-253
-
-
Ronquist, F.1
|