Large flanking sequence effects in single nucleotide mismatch detection using fluorescent nucleoside Çf

Bioorganic and Medicinal Chemistry

Volumn 18, Issue 16, 2010, Pages 6121-6126

  Gardarsson, Haraldur ^a   Sigurdsson, Snorri Th ^a  

^a UNIVERSITY OF ICELAND   (Iceland)

Author keywords

Base discriminating fluorosides (BDFs); Fluorescence quenching; Mercuric ions; Phenoxazine; Single nucleotide polymorphisms (SNP)

Indexed keywords

FLUORESCENT DYE; MERCURY; NUCLEOSIDE; POTASSIUM IODIDE;

ARTICLE; BASE MISPAIRING; BASE PAIRING; DNA FLANKING REGION; DNA SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM;

BASE PAIR MISMATCH; BASE SEQUENCE; FLUORESCENT DYES; MERCURY; NUCLEOSIDES; OLIGONUCLEOTIDES; ORGANOPHOSPHORUS COMPOUNDS; SPECTROMETRY, FLUORESCENCE;

EID: 77955467027     PISSN: 09680896     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bmc.2010.06.060     Document Type: Article

References (34)

1. K. Nakatani Chembiochem 5 2004 1623
2. D.G. Wang, J.B. Fan, C.J. Siao, A. Berno, P. Young, R. Sapolsky, G. Ghandour, N. Perkins, E. Winchester, J. Spencer, L. Kruglyak, L. Stein, L. Hsie, T. Topaloglou, E. Hubbell, E. Robinson, M. Mittmann, M.S. Morris, N. Shen, D. Kilburn, J. Rioux, C. Nusbaum, S. Rozen, T.J. Hudson, R. Lipshutz, M. Chee, and E.S. Lander Science 280 1998 1077
3. R. Yamada Nat. Clin. Pract. Rheumatol. 4 2008 210
4. Y. Suh, and J. Vijg Mutat. Res. 573 2005 41
5. T. LaFramboise Nucleic Acids Res. 37 2009 4181
6. Y. Kochi, R. Yamada, A. Suzuki, J.B. Harley, S. Shirasawa, T. Sawada, S.C. Bae, S. Tokuhiro, X. Chang, A. Sekine, A. Takahashi, T. Tsunoda, Y. Ohnishi, K.M. Kaufman, C.P. Kang, C. Kang, S. Otsubo, W. Yumura, A. Mimori, T. Koike, Y. Nakamura, T. Sasazuki, and K. Yamamoto Nat. Genet. 37 2005 478
7. K. Okamoto, S. Makino, Y. Yoshikawa, A. Takaki, Y. Nagatsuka, M. Ota, G. Tamiya, A. Kimura, S. Bahram, and H. Inoko Am. J. Hum. Genet. 72 2003 303
8. A.L. Beaudet, and J.W. Belmont Annu. Rev. Med. 59 2008 113
9. R.M. Twyman Curr. Top. Med. Chem. 4 2004 1423
10. P. Sandin, K. Börjesson, L. Hong, J. Martenson, T. Brown, L.M. Wilhelmsson, and B. Albinsson Nucleic Acids Res. 36 2008 157
11. A. Okamoto, Y. Saito, and I. Saito J. Photochem. Photobiol., C 6 2005 108
12. A. Okamoto, K. Tanaka, and I. Saito J. Am. Chem. Soc. 125 2003 9296
13. A.T. Krueger, and E.T. Kool J. Am. Chem. Soc. 130 2008 3989
14. R.H. Hudson, and A. Ghorbani-Choghamarani Synlett 2007 870
15. C. Dohno, and I. Saito Chembiochem 6 2005 1075
16. S.L. Driscoll, M.E. Hawkins, F.M. Balis, W. Pfleiderer, and W.R. Laws Biophys. J. 73 1997 3277
17. N.B. Gaied, N. Glasser, N. Ramalanjaona, H. Beltz, P. Wolff, R. Marquet, A. Burger, and Y. Mély Nucleic Acids Res. 33 2005 1031
18. Y. Saito, K. Hanawa, K. Motegi, K. Omoto, A. Okamoto, and I. Saito Tetrahedron Lett. 46 2005 7605
19. O. Kohler, D.V. Jarikote, and O. Seitz Chembiochem 6 2005 69
20. C. Dose, and O. Seitz Bioorg. Med. Chem. 16 2008 65
21. E. Socher, D.V. Jarikote, A. Knoll, L. Roglin, J. Burmeister, and O. Seitz Anal. Biochem. 375 2008 318
22. H.A. Wagenknecht Ann. N.Y. Acad. Sci. 1130 2008 122
23. P. Cekan, and S.T. Sigurdsson Chem. Commun. 29 2008 3393
24. N. Barhate, P. Cekan, A.P. Massey, and S.T. Sigurdsson Angew. Chem., Int. Ed. 46 2007 2655
25. W.R. Dawson, and M.W. Windsor J. Phys. Chem. 72 1968 3251
26. J.N. Demas, and G.A. Crosby J. Phys. Chem. US 75 1971 991
27. S. Flowers, E.E. Biswas, and S.B. Biswas Biochemistry 42 2003 1910
28. S. Huang, and S.-C. Tu Photochem. Photobiol. 81 2005 425
29. T. Yamane, and N. Davidson J. Am. Chem. Soc. 83 1961 2599
30. L.D. Kosturko, C. Folzer, and R.F. Stewart Biochemistry 13 1974 3949
31. Y. Tanaka, S. Oda, H. Yamaguchi, Y. Kondo, C. Kojima, and A. Ono J. Am. Chem. Soc. 129 2007 244
32. K. Rurack Spectrochim. Acta A Mol. Biomol. Spectrosc. 57 2001 2161
33. K. Rurack, J.L. Bricks, B. Schulz, M. Maus, G. Reck, and U. Resch-Genger J. Phys. Chem. A 104 2000 6171
34. H. Masuhara, H. Shioyama, T. Saito, K. Hamada, S. Yasoshima, and N. Mataga J. Phys. Chem. 88 1984 5868