Assessment of buffer systems for harvesting proteins from tissue interstitial fluid for proteomic analysis

Journal of Proteome Research

Volumn 9, Issue 8, 2010, Pages 4161-4169

  Teng, Pang Ning ^a,b   Rungruang, Bunja J ^a   Hood, Brian L ^a,b   Sun, Mai ^a,b   Flint, Melanie S ^a,b   Bateman, Nicholas W ^a,b   Dhir, Rajiv ^a   Bhargava, Rohit ^a   Richard, Scott D ^a   Edwards, Robert P ^a   Conrads, Thomas P ^a,b  

^a UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF PITTSBURGH CANCER INSTITUTE   (United States)

Author keywords

cancer biomarker; ovarian cancer; renal cell carcinoma; tissue interstitial fluid; tumor microenvironment

Indexed keywords

2 OXOGLUTARIC ACID; BUFFER; CELSIOR; DULBECCO MODIFIED EAGLE MEDIUM; HISTIDINE; HISTIDINE TRYPTOPHAN KETOGLUTARATE; PHOSPHATE BUFFERED SALINE; PRESERVATION SOLUTION; PROTEOME; TISSUE CULTURE MEDIUM; TRYPTOPHAN; UNCLASSIFIED DRUG; UNIVERSITY OF WISCONSIN SOLUTION;

ARTICLE; CONTROLLED STUDY; HUMAN; HUMAN TISSUE; INTERSTITIAL FLUID; KIDNEY; KIDNEY TUMOR; LIQUID CHROMATOGRAPHY; ORGAN TRANSPLANTATION; OVARY TUMOR; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PURIFICATION; PROTEOMICS; TANDEM MASS SPECTROMETRY; TISSUE CULTURE;

BUFFERS; CELL LINE, TUMOR; CELL PROLIFERATION; CHROMATOGRAPHY, LIQUID; CULTURE MEDIA; ELECTROPHORESIS; EXTRACELLULAR FLUID; FEMALE; HUMANS; KIDNEY NEOPLASMS; ORGAN PRESERVATION SOLUTIONS; OVARIAN NEOPLASMS; PROTEINS; PROTEOMICS; SODIUM CHLORIDE; TANDEM MASS SPECTROMETRY;

EID: 77955456258     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr100382v     Document Type: Article

References (21)

1. Hanash, S. M.; Pitteri, S. J.; Faca, V. M. Mining the plasma proteome for cancer biomarkers Nature 2008, 452 (7187) 571-9
2. Gromov, P.; Gromova, I.; Bunkenborg, J.; Cabezon, T.; Moreira, J. M.; Timmermans-Wielenga, V.; Roepstorff, P.; Rank, F.; Celis, J. E. Up-regulated proteins in the fluid bathing the tumour cell microenvironment as potential serological markers for early detection of cancer of the breast Mol. Oncol. 2010, 4 (1) 65-89
3. Sun, W.; Ma, J.; Wu, S.; Yang, D.; Yan, Y.; Liu, K.; Wang, J.; Sun, L.; Chen, N.; Wei, H.; Zhu, Y.; Xing, B.; Zhao, X. H.; Qian, X.; Jiang, Y.; He, F. Characterization of the Liver Tissue Interstitial Fluid (TIF) Proteome Indicates Potential for Application in Liver Disease Biomarker Discovery J. Proteome Res. 2010, 9, 1020-31
4. Sedlaczek, P.; Frydecka, I.; Gabrys, M.; Van Dalen, A.; Einarsson, R.; Harlozinska, A. Comparative analysis of CA125, tissue polypeptide specific antigen, and soluble interleukin-2 receptor alpha levels in sera, cyst, and ascitic fluids from patients with ovarian carcinoma Cancer 2002, 95 (9) 1886-93
5. Celis, J. E.; Gromov, P.; Cabezon, T.; Moreira, J. M.; Ambartsumian, N.; Sandelin, K.; Rank, F.; Gromova, I. Proteomic characterization of the interstitial fluid perfusing the breast tumor microenvironment: a novel resource for biomarker and therapeutic target discovery Mol. Cell. Proteomics 2004, 3 (4) 327-44
6. Celis, J. E.; Moreira, J. M.; Cabezon, T.; Gromov, P.; Friis, E.; Rank, F.; Gromova, I. Identification of extracellular and intracellular signaling components of the mammary adipose tissue and its interstitial fluid in high risk breast cancer patients: toward dissecting the molecular circuitry of epithelial-adipocyte stromal cell interactions Mol. Cell. Proteomics 2005, 4 (4) 492-522
7. Cortesi, L.; Barchetti, A.; De Matteis, E.; Rossi, E.; Della Casa, L.; Marcheselli, L.; Tazzioli, G.; Lazzaretti, M. G.; Ficarra, G.; Federico, M.; Iannone, A. Identification of protein clusters predictive of response to chemotherapy in breast cancer patients J Proteome Res 2009, 8 (11) 4916-33
8. Anaya-Prado, R.; Delgado-Vazquez, J. A. Scientific basis of organ preservation Curr. Opin. Organ Transplant. 2008, 13 (2) 129-34
9. Karam, G.; Compagnon, P.; Hourmant, M.; Despins, P.; Duveau, D.; Noury, D.; Boudjema, K. A single solution for multiple organ procurement and preservation Transplant Int. 2005, 18 (6) 657-63
10. Janssen, H.; Janssen, P. H.; Broelsch, C. E. Celsior solution compared with University of Wisconsin solution (UW) and histidine-tryptophan- ketoglutarate solution (HTK) in the protection of human hepatocytes against ischemia-reperfusion injury Transplant Int. 2003, 16 (7) 515-22
11. Agarwal, A.; Murdock, P.; Pescovitz, M. D.; Goggins, W. C.; Milgrom, M. L.; Fridell, J. A. Follow-up experience using histidine-tryptophan ketoglutarate solution in clinical pancreas transplantation Transplant Proc. 2005, 37 (8) 3523-6
12. de Boer, J.; De Meester, J.; Smits, J. M.; Groenewoud, A. F.; Bok, A.; van der Velde, O.; Doxiadis, I. I.; Persijn, G. G. Eurotransplant randomized multicenter kidney graft preservation study comparing HTK with UW and Euro-Collins Transplant Int. 1999, 12 (6) 447-53
13. Feng, X. N.; Xu, X.; Zheng, S. S. Current status and perspective of liver preservation solutions Hepatobiliary Pancreatic Dis. Int. 2006, 5 (4) 490-4
14. Reichenspurner, H.; Russ, C.; Wagner, F.; Uberfuhr, P.; Nollert, G.; Weinhold, C.; Reichart, B. Comparison of UW versus HTK solution for myocardial protection in heart transplantation Transplant Int. 1994, 7 (Suppl 1) S481-4
15. Shevchenko, A.; Tomas, H.; Havlis, J.; Olsen, J. V.; Mann, M. In-gel digestion for mass spectrometric characterization of proteins and proteomes Nat. Protoc. 2006, 1 (6) 2856-60
16. Hass, R.; Bertram, C. Characterization of human breast cancer epithelial cells (HBCEC) derived from long term cultured biopsies J. Exp. Clin. Cancer Res. 2009, 28, 127
17. Harris, A. L. Hypoxia - a key regulatory factor in tumour growth Nat. Rev. Cancer 2002, 2 (1) 38-47
18. Konety, B. R.; Nguyen, T. S.; Dhir, R.; Day, R. S.; Becich, M. J.; Stadler, W. M.; Getzenberg, R. H. Detection of bladder cancer using a novel nuclear matrix protein, BLCA-4 Clin. Cancer Res. 2000, 6 (7) 2618-25
19. Brunagel, G.; Vietmeier, B. N.; Bauer, A. J.; Schoen, R. E.; Getzenberg, R. H. Identification of nuclear matrix protein alterations associated with human colon cancer Cancer Res. 2002, 62 (8) 2437-42
20. Leman, E. S.; Arlotti, J. A.; Dhir, R.; Greenberg, N.; Getzenberg, R. H. Characterization of the nuclear matrix proteins in a transgenic mouse model for prostate cancer J. Cell. Biochem. 2002, 86 (2) 203-12
21. Maathuis, M. H.; Leuvenink, H. G.; Ploeg, R. J. Perspectives in organ preservation Transplantation 2007, 83 (10) 1289-98