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Volumn 123, Issue 15, 2010, Pages 2663-2671

Chromatin interaction of TATA-binding protein is dynamically regulated in human cells

Author keywords

Basal transcription factors; FRAP; Gene expression; TBP; TFIID

Indexed keywords

TATA BINDING PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR IID; TRANSCRIPTION FACTOR NC2 ALPHA; UNCLASSIFIED DRUG;

EID: 77955343194     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: 10.1242/jcs.064097     Document Type: Article
Times cited : (47)

References (56)
  • 2
    • 33644530060 scopus 로고    scopus 로고
    • A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-kappaB-dependent gene activity
    • DOI 10.1038/sj.emboj.7600977, PII 7600977
    • Bosisio, D., Marazzi, I., Agresti, A., Shimizu, N., Bianchi, M. E. and Natoli, G. (2006). A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-kappaB-dependent gene activity. EMBO J. 25, 798-810. (Pubitemid 43292441)
    • (2006) EMBO Journal , vol.25 , Issue.4 , pp. 798-810
    • Bosisio, D.1    Marazzi, I.2    Agresti, A.3    Shimizu, N.4    Bianchi, M.E.5    Natoli, G.6
  • 3
    • 0030013203 scopus 로고    scopus 로고
    • Biochemistry and structural biology of transcription factor IID (TFIID)
    • Burley, S. K. and Roeder, R. G. (1996). Biochemistry and structural biology of transcription factor IID (TFIID). Annu. Rev. Biochem. 65, 769-799.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 769-799
    • Burley, S.K.1    Roeder, R.G.2
  • 4
    • 0036151490 scopus 로고    scopus 로고
    • TBP dynamics in living human cells: Constitutive association of TBP with mitotic chromosomes
    • DOI 10.1091/mbc.01-10-0523
    • Chen, D., Hinkley, C. S., Henry, R. W. and Huang, S. (2002). TBP dynamics in living human cells: constitutive association of TBP with mitotic chromosomes. Mol. Biol. Cell 13, 276-284. (Pubitemid 34106075)
    • (2002) Molecular Biology of the Cell , vol.13 , Issue.1 , pp. 276-284
    • Chen, D.1    Hinkley, C.S.2    Henry, R.W.3    Huang, S.4
  • 5
    • 0036144598 scopus 로고    scopus 로고
    • Association of human TFIID-promoter complexes with silenced mitotic chromatin in vivo
    • Christova, R. and Oelgeschlager, T. (2002). Association of human TFIID-promoter complexes with silenced mitotic chromatin in vivo. Nat. Cell Biol. 4, 79-82.
    • (2002) Nat. Cell Biol. , vol.4 , pp. 79-82
    • Christova, R.1    Oelgeschlager, T.2
  • 6
    • 33646591544 scopus 로고    scopus 로고
    • Transcriptional pulsing of a developmental gene
    • Chubb, J. R., Trcek, T., Shenoy, S. M. and Singer, R. H. (2006). Transcriptional pulsing of a developmental gene. Curr. Biol. 16, 1018-1025.
    • (2006) Curr. Biol. , vol.16 , pp. 1018-1025
    • Chubb, J.R.1    Trcek, T.2    Shenoy, S.M.3    Singer, R.H.4
  • 7
    • 67649946313 scopus 로고    scopus 로고
    • Recent advances in understanding the structure and function of general transcription factor TFIID
    • Cler, E., Papai, G., Schultz, P. and Davidson, I. (2009). Recent advances in understanding the structure and function of general transcription factor TFIID. Cell. Mol. Life Sci. 66, 2123-2134.
    • (2009) Cell. Mol. Life Sci. , vol.66 , pp. 2123-2134
    • Cler, E.1    Papai, G.2    Schultz, P.3    Davidson, I.4
  • 8
    • 41349094797 scopus 로고    scopus 로고
    • Transcription regulation through promoter-proximal pausing of RNA polymerase II
    • DOI 10.1126/science.1150843
    • Core, L. J. and Lis, J. T. (2008). Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science 319, 1791-1792. (Pubitemid 351451556)
    • (2008) Science , vol.319 , Issue.5871 , pp. 1791-1792
    • Core, L.J.1    Lis, J.T.2
  • 10
    • 18944372568 scopus 로고    scopus 로고
    • Mot1-mediated control of transcription complex assembly and activity
    • Dasgupta, A., Juedes, S. A., Sprouse, R. O. and Auble, D. T. (2005). Mot1-mediated control of transcription complex assembly and activity. EMBO J. 24, 1717-1729.
    • (2005) EMBO J. , vol.24 , pp. 1717-1729
    • Dasgupta, A.1    Juedes, S.A.2    Sprouse, R.O.3    Auble, D.T.4
  • 11
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam, J. D., Lebovitz, R. M. and Roeder, R. G. (1983). Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11, 1475-1489.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 12
    • 2242433534 scopus 로고    scopus 로고
    • A kinetic framework for a mammalian RNA polymerase in vivo
    • DOI 10.1126/science.1076164
    • Dundr, M., Hoffmann-Rohrer, U., Hu, Q., Grummt, I., Rothblum, L. I., Phair, R. D. and Misteli, T. (2002). A kinetic framework for a mammalian RNA polymerase in vivo. Science 298, 1623-1626. (Pubitemid 35387201)
    • (2002) Science , vol.298 , Issue.5598 , pp. 1623-1626
    • Dundr, M.1    Hoffmann-Rohrer, U.2    Hu, Q.3    Grummt, I.4    Rothblum, L.I.5    Phair, R.D.6    Misteli, T.7
  • 14
    • 27144466425 scopus 로고    scopus 로고
    • Antiandrogens prevent stable DNA-binding of the androgen receptor
    • Farla, P., Hersmus, R., Trapman, J. and Houtsmuller, A. B. (2005). Antiandrogens prevent stable DNA-binding of the androgen receptor. J. Cell Sci. 118, 4187-4198.
    • (2005) J. Cell Sci. , vol.118 , pp. 4187-4198
    • Farla, P.1    Hersmus, R.2    Trapman, J.3    Houtsmuller, A.B.4
  • 15
    • 0036889358 scopus 로고    scopus 로고
    • Mot1 associates with transcriptionally active promoters and inhibits association of NC2 in Saccharomyces cerevisiae
    • DOI 10.1128/MCB.22.23.8122-8134.2002
    • Geisberg, J. V., Moqtaderi, Z., Kuras, L. and Struhl, K. (2002). Mot1 associates with transcriptionally active promoters and inhibits association of NC2 in Saccharomyces cerevisiae. Mol. Cell. Biol. 22, 8122-8134. (Pubitemid 35304046)
    • (2002) Molecular and Cellular Biology , vol.22 , Issue.23 , pp. 8122-8134
    • Geisberg, J.V.1    Moqtaderi, Z.2    Kuras, L.3    Struhl, K.4
  • 16
    • 14044266960 scopus 로고    scopus 로고
    • Efficient binding of NC2.TATA-binding protein to DNA in the absence of TATA
    • Gilfillan, S., Stelzer, G., Piaia, E., Hofmann, M. G. and Meisterernst, M. (2005). Efficient binding of NC2.TATA-binding protein to DNA in the absence of TATA. J. Biol. Chem. 280, 6222-6230.
    • (2005) J. Biol. Chem. , vol.280 , pp. 6222-6230
    • Gilfillan, S.1    Stelzer, G.2    Piaia, E.3    Hofmann, M.G.4    Meisterernst, M.5
  • 17
    • 0029977801 scopus 로고    scopus 로고
    • A mechanism for repression of class II gene transcription through specific binding of NC2 to TBP-promoter complexes via heterodimeric histone fold domains
    • Goppelt, A., Stelzer, G., Lottspeich, F. and Meisterernst, M. (1996). A mechanism for repression of class II gene transcription through specific binding of NC2 to TBP-promoter complexes via heterodimeric histone fold domains. EMBO J. 15, 3105-3116. (Pubitemid 26187758)
    • (1996) EMBO Journal , vol.15 , Issue.12 , pp. 3105-3116
    • Goppelt, A.1    Stelzer, G.2    Lottspeich, F.3    Meisterernst, M.4
  • 18
    • 43449111772 scopus 로고    scopus 로고
    • Modulation of RNA Polymerase Assembly Dynamics in Transcriptional Regulation
    • DOI 10.1016/j.molcel.2008.04.021, PII S1097276508003237
    • Gorski, S. A., Snyder, S. K., John, S., Grummt, I. and Misteli, T. (2008). Modulation of RNA polymerase assembly dynamics in transcriptional regulation. Mol. Cell 30, 486-497. (Pubitemid 351672375)
    • (2008) Molecular Cell , vol.30 , Issue.4 , pp. 486-497
    • Gorski, S.A.1    Snyder, S.K.2    John, S.3    Grummt, I.4    Misteli, T.5
  • 21
    • 51149085210 scopus 로고    scopus 로고
    • TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription
    • Hsu, J. Y., Juven-Gershon, T., Marr, M. T., 2nd, Wright, K. J., Tjian, R. and Kadonaga, J. T. (2008). TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription. Genes Dev. 22, 2353-2358.
    • (2008) Genes Dev. , vol.22 , pp. 2353-2358
    • Hsu, J.Y.1    Juven-Gershon, T.2    Marr II, M.T.3    Wright, K.J.4    Tjian, R.5    Kadonaga, J.T.6
  • 22
    • 0026742095 scopus 로고
    • Dr1, a TATA-binding protein-associated phosphoprotein and inhibitor of class II gene transcription
    • Inostroza, J. A., Mermelstein, F. H., Ha, I., Lane, W. S. and Reinberg, D. (1992). Dr1, a TATA-binding protein-associated phosphoprotein and inhibitor of class II gene transcription. Cell 70, 477-489.
    • (1992) Cell , vol.70 , pp. 477-489
    • Inostroza, J.A.1    Mermelstein, F.H.2    Ha, I.3    Lane, W.S.4    Reinberg, D.5
  • 24
    • 38549126635 scopus 로고    scopus 로고
    • Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter
    • DOI 10.1126/science.1150559
    • Karpova, T. S., Kim, M. J., Spriet, C., Nalley, K., Stasevich, T. J., Kherrouche, Z., Heliot, L. and McNally, J. G. (2008). Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter. Science 319, 466-469. (Pubitemid 351160580)
    • (2008) Science , vol.319 , Issue.5862 , pp. 466-469
    • Karpova, T.S.1    Kim, M.J.2    Spriet, C.3    Nalley, K.4    Stasevich, T.J.5    Kherrouche, Z.6    Heliot, L.7    McNally, J.G.8
  • 25
    • 4644334616 scopus 로고    scopus 로고
    • Cell-specific nucleolar localization of TBP-related factor 2
    • Kieffer-Kwon, P., Martianov, I. and Davidson, I. (2004). Cell-specific nucleolar localization of TBP-related factor 2. Mol. Biol. Cell 15, 4356-4368.
    • (2004) Mol. Biol. Cell , vol.15 , pp. 4356-4368
    • Kieffer-Kwon, P.1    Martianov, I.2    Davidson, I.3
  • 26
    • 0037049641 scopus 로고    scopus 로고
    • The transcription cycle of RNA polymerase II in living cells
    • Kimura, H., Sugaya, K. and Cook, P. R. (2002). The transcription cycle of RNA polymerase II in living cells. J. Cell Biol. 159, 777-782.
    • (2002) J. Cell Biol. , vol.159 , pp. 777-782
    • Kimura, H.1    Sugaya, K.2    Cook, P.R.3
  • 30
    • 0343415609 scopus 로고    scopus 로고
    • The glucocorticoid receptor: Rapid exchange with regulatory sites in living cells
    • DOI 10.1126/science.287.5456.1262
    • McNally, J. G., Muller, W. G., Walker, D., Wolford, R. and Hager, G. L. (2000). The glucocorticoid receptor: rapid exchange with regulatory sites in living cells. Science 287, 1262-1265. (Pubitemid 30112147)
    • (2000) Science , vol.287 , Issue.5456 , pp. 1262-1265
    • McNally, J.C.1    Muller, W.G.2    Walker, D.3    Wolford, R.4    Hager, G.L.5
  • 31
    • 0025988495 scopus 로고
    • Activation of class II gene transcription by regulatory factors is potentiated by a novel activity
    • Meisterernst, M., Roy, A. L., Lieu, H. M. and Roeder, R. G. (1991). Activation of class II gene transcription by regulatory factors is potentiated by a novel activity. Cell 66, 981-993.
    • (1991) Cell , vol.66 , pp. 981-993
    • Meisterernst, M.1    Roy, A.L.2    Lieu, H.M.3    Roeder, R.G.4
  • 32
    • 43849110454 scopus 로고    scopus 로고
    • Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes
    • Mousson, F., Kolkman, A., Pijnappel, W. W., Timmers, H. T. and Heck, A. J. (2008). Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes. Mol. Cell Proteomics 7, 845-852.
    • (2008) Mol. Cell Proteomics , vol.7 , pp. 845-852
    • Mousson, F.1    Kolkman, A.2    Pijnappel, W.W.3    Timmers, H.T.4    Heck, A.J.5
  • 33
    • 43149119497 scopus 로고    scopus 로고
    • Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching
    • Mueller, F., Wach, P. and McNally, J. G. (2008). Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching. Biophys. J. 94, 3323-3339.
    • (2008) Biophys. J. , vol.94 , pp. 3323-3339
    • Mueller, F.1    Wach, P.2    McNally, J.G.3
  • 34
    • 34447522202 scopus 로고    scopus 로고
    • New problems in RNA polymerase II transcription initiation: Matching the diversity of core promoters with a variety of promoter recognition factors
    • Muller, F., Demeny, M. A. and Tora, L. (2007). New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors. J. Biol. Chem. 282, 14685-14689.
    • (2007) J. Biol. Chem. , vol.282 , pp. 14685-14689
    • Muller, F.1    Demeny, M.A.2    Tora, L.3
  • 35
    • 0035833262 scopus 로고    scopus 로고
    • Large-scale chromatin decondensation and recondensation regulated by transcription from a natural promoter
    • DOI 10.1083/jcb.200011069
    • Muller, W. G., Walker, D., Hager, G. L. and McNally, J. G. (2001). Large-scale chromatin decondensation and recondensation regulated by transcription from a natural promoter. J. Cell Biol. 154, 33-48. (Pubitemid 34289276)
    • (2001) Journal of Cell Biology , vol.154 , Issue.1 , pp. 33-48
    • Muller, W.G.1    Walker, D.2    Hager, G.L.3    McNally, J.G.4
  • 36
    • 0141817837 scopus 로고    scopus 로고
    • Roles for BTAF1 and Mot1p in dynamics of TATA-binding protein and regulation of RNA polymerase II transcription
    • Pereira, L. A., Klejman, M. P. and Timmers, H. T. (2003). Roles for BTAF1 and Mot1p in dynamics of TATA-binding protein and regulation of RNA polymerase II transcription. Gene 315, 1-13.
    • (2003) Gene , vol.315 , pp. 1-13
    • Pereira, L.A.1    Klejman, M.P.2    Timmers, H.T.3
  • 38
    • 0029926760 scopus 로고    scopus 로고
    • Monoclonal antibodies directed against the amino-terminal domain of human TBP cross-react with TBP from other species
    • Ruppert, S. M., McCulloch, V., Meyer, M., Bautista, C., Falkowski, M., Stunnenberg, H. G. and Hernandez, N. (1996). Monoclonal antibodies directed against the amino-terminal domain of human TBP cross-react with TBP from other species. Hybridoma 15, 55-68.
    • (1996) Hybridoma , vol.15 , pp. 55-68
    • Ruppert, S.M.1    McCulloch, V.2    Meyer, M.3    Bautista, C.4    Falkowski, M.5    Stunnenberg, H.G.6    Hernandez, N.7
  • 40
    • 0025804494 scopus 로고
    • 1 Phase, Encodes a 210-Kilodalton Nuclear DNA-Binding Protein
    • Sekiguchi, T., Nohiro, Y., Nakamura, Y., Hisamoto, N. and Nishimoto, T. (1991). The human CCG1 gene, essential for progression of the G1 phase, encodes a 210-kilodalton nuclear DNA-binding protein. Mol. Cell. Biol. 11, 3317-3325. (Pubitemid 21895719)
    • (1991) Molecular and Cellular Biology , vol.11 , Issue.6 , pp. 3317-3325
    • Sekiguchi, T.1    Nohiro, Y.2    Nakamura, Y.3    Hisamoto, N.4    Nishimoto, T.5
  • 41
    • 66049096618 scopus 로고    scopus 로고
    • The basal initiation machinery: Beyond the general transcription factors
    • Sikorski, T. W. and Buratowski, S. (2009). The basal initiation machinery: beyond the general transcription factors. Curr. Opin. Cell Biol. 21, 344-351.
    • (2009) Curr. Opin. Cell Biol. , vol.21 , pp. 344-351
    • Sikorski, T.W.1    Buratowski, S.2
  • 43
    • 0035141041 scopus 로고    scopus 로고
    • FRAP reveals that mobility of oestrogen receptor-alpha is ligand- And proteasome-dependent
    • DOI 10.1038/35050515
    • Stenoien, D. L., Patel, K., Mancini, M. G., Dutertre, M., Smith, C. L., O'Malley, B. W. and Mancini, M. A. (2001). FRAP reveals that mobility of oestrogen receptor-alpha is ligand- and proteasome-dependent. Nat. Cell Biol. 3, 15-23. (Pubitemid 32114827)
    • (2001) Nature Cell Biology , vol.3 , Issue.1 , pp. 15-23
    • Stenoien, D.L.1    Patel, K.2    Mancini, M.G.3    Dutertre, M.4    Smith, C.L.5    O'Malley, B.W.6    Mancini, M.A.7
  • 44
    • 67649766870 scopus 로고    scopus 로고
    • Transcription factories: Gene expression in unions?
    • Sutherland, H. and Bickmore, W. A. (2009). Transcription factories: gene expression in unions? Nat. Rev. Genet. 10, 457-466.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 457-466
    • Sutherland, H.1    Bickmore, W.A.2
  • 46
    • 33747881750 scopus 로고    scopus 로고
    • The general transcription machinery and general cofactors
    • Thomas, M. C. and Chiang, C. M. (2006). The general transcription machinery and general cofactors. Crit. Rev. Biochem. Mol. Biol. 41, 105-178.
    • (2006) Crit. Rev. Biochem. Mol. Biol. , vol.41 , pp. 105-178
    • Thomas, M.C.1    Chiang, C.M.2
  • 48
    • 0037087628 scopus 로고
    • A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription
    • Tora, L. (1992). A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. Genes Dev. 16, 673-675.
    • (1992) Genes Dev. , vol.16 , pp. 673-675
    • Tora, L.1
  • 50
    • 60349125976 scopus 로고    scopus 로고
    • Fluorescence recovery after photobleaching (FRAP) to study nuclear protein dynamics in living cells
    • van Royen, M. E., Farla, P., Mattern, K. A., Geverts, B., Trapman, J. and Houtsmuller, A. B. (2009). Fluorescence recovery after photobleaching (FRAP) to study nuclear protein dynamics in living cells. Methods Mol. Biol. 464, 363-385.
    • (2009) Methods Mol. Biol. , vol.464 , pp. 363-385
    • Van Royen, M.E.1    Farla, P.2    Mattern, K.A.3    Geverts, B.4    Trapman, J.5    Houtsmuller, A.B.6
  • 52
    • 70349813779 scopus 로고    scopus 로고
    • Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome
    • van Werven, F. J., van Teeffelen, H. A., Holstege, F. C. and Timmers, H. T. (2009). Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome. Nat. Struct. Mol. Biol. 16, 1043-1048.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 1043-1048
    • Van Werven, F.J.1    Van Teeffelen, H.A.2    Holstege, F.C.3    Timmers, H.T.4
  • 55
    • 33748304273 scopus 로고    scopus 로고
    • Dynamics of heat shock factor association with native gene loci in living cells
    • DOI 10.1038/nature05025, PII NATURE05025
    • Yao, J., Munson, K. M., Webb, W. W. and Lis, J. T. (2006). Dynamics of heat shock factor association with native gene loci in living cells. Nature 442, 1050-1053. (Pubitemid 44330263)
    • (2006) Nature , vol.442 , Issue.7106 , pp. 1050-1053
    • Yao, J.1    Munson, K.M.2    Webb, W.W.3    Lis, J.T.4
  • 56
    • 37349099448 scopus 로고    scopus 로고
    • Intranuclear Distribution and Local Dynamics of RNA Polymerase II during Transcription Activation
    • DOI 10.1016/j.molcel.2007.10.017, PII S1097276507006995
    • Yao, J., Ardehali, M. B., Fecko, C. J., Webb, W. W. and Lis, J. T. (2007). Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. Mol. Cell 28, 978-990. (Pubitemid 350297022)
    • (2007) Molecular Cell , vol.28 , Issue.6 , pp. 978-990
    • Yao, J.1    Ardehali, M.B.2    Fecko, C.J.3    Webb, W.W.4    Lis, J.T.5


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