Characterization of α-L-arabinofuranosidase related to the secondary cell walls formation in Arabidopsis thaliana

Plant Biotechnology

Volumn 27, Issue 3, 2010, Pages 259-266

  Ichinose, Hitomi ^a   Nishikubo, Nobuyuki ^b,d   Demura, Taku ^b,c   Kaneko, Satoshi ^a  

^a NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^b RIKEN   (Japan)

^c NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^d OJI PAPER CO LTD   (Japan)

Author keywords

Arabidopsis thaliana; Glycoside hydrolase family 51; Secondary wall formation; Xylan degradation; L arabinofuranosidase

Indexed keywords

EID: 77955333085     PISSN: 13424580     EISSN: 13476114     Source Type: Journal    
DOI: 10.5511/plantbiotechnology.27.259     Document Type: Article

References (25)

1. Cantarel BL, Coutinho PM, Rancurel C, Bermard T, Lombard V, Henrissat B (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37: D233-D238
2. Carpita NC, Gibeaut DM (1993) Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth. Plant J 3: 1-30
3. Demura T, Tashiro G, Horiguchi G, Kishimoto N, Kubo M et al. (2002) Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells. Proc Natl Acad Sci USA 99: 15794-15799
4. Fulton LM, Cobbett CS (2003) Two α-L-arabinofuranosidase genes in Arabidopsis thaliana are differentially expressed during vegetative growth and flower development. J Exp Bot 392: 2467-2477
5. Geisler-Lee J, Geisler M, Coutinho PM, Segerman B, Nishikubo N, et al. (2006) Poplar carbohydrate-active enzymes. Gene identification and expression analyses. Plant Physiol 140: 946-962
6. Henrissat B, Coutinho PM, Davies GJ (2001) A census of carbohydrate-active enzymes in the genome of Arabidopsis thaliana. Plant Mol Biol 47: 55-72
7. Ichinose H, Yoshida M, Kotake T, Kuno A, Igarashi K, Tsumuraya Y, Samejima M, Hirabayashi J, Kobayashi H, Kaneko S (2005) An exo-β-1,3-galactanase having a novel β-1,3-galactan-binding module from Phanerochaete chrysosporium. J Biol Chem 280: 25820-25829
8. Ichinose H, Yoshida M, Fujimoto Z, Kaneko S (2008) Characterization of a modular enzyme of exo-1,5-α-L-arabinofuranosidase and arabinan binding module from Streptomyces avermitilis NBRC14893. Appl Microbiol Biotechnol 80: 399-408
9. Kaneko S, Shimasaki T, Kusakabe I (1993) Purification and some properties of intracellular α-L-arabinofuranosidase from Aspergillus niger 5-16. Biosci Biotechnol Biochem 57: 1161-1165
10. Kaneko S, Sano M, Kusakabe I (1994) Purification and some properties of α-L-arabinofuranosidase from Bacillus subtilis 3-6. Appl Environ Microbiol 60: 3425-3428
11. Kaneko S, Kusakabe I (1995) Substrate specificity of α-L-arabinofuranosidase from Bacillus subtilis 3-6 toward arabinofuranooligosaccharides. Biosci Biotechnol Biochem 59: 2132-2133
12. Kaneko S, Arimoto M, Ohba M, Kobayashi H, Ishii T, Kusakabe I (1998) Purification and substrate specificities of two α-L-arabinofuranosidases from Aspergillus awamori IFO 4033. Appl Environ Microbiol 64: 4021-4027
13. Kawabata Y, Kaneko S, Kusakabe I, Gama Y (1995) Synthesis of regioisomeric methyl α-L-arabinofuranobiosides. Carbohydr Res 267: 39-47
14. Kubo M, Udagawa M, Nishikubo N, Horiguchi G, Yamaguchi M, Ito J, Mimura T, Fukuda F, Demura T (2005) Transcription switches for protoxylem and metaxylem vessel formation. Genes Dev 19: 1855-1860
15. Kusakabe I, Ohgushi S, Yasui T, Kobayashi T (1983) Structures of the arabinoxylo-oligosaccharides from the hydrolytic products of corncob arabinoxylan by a xylanase from Streptomyces. Agric Biol Chem 47: 2713-2723
16. Lee RC, Burton RA, Hrmova M, Fincher GB (2001) Barley arabinoxylan arabinofuranohydrolases: purification, characterization and determination of primary structures from cDNA clones. Biochem J 356: 181-189
17. Matsuo N, Kaneko S, Kuno A, Kobayashi H, Kusakabe I (2000) Purification, characterization and gene cloning of two α-L-arabinofuranosidases from Streptomyces chartreusis GS901. Biochem J 346: 9-15
18. McCartney L, Marcus SE, Knox JP (2005) Monoclonal antibodies to plant cell wall xylans and arabinoxylans. J. Histochem Cytochem 53: 543-546
19. Minic Z, Rihouey C, Do CT, Lerouge P, Jouanin L (2004) Purification and characterization of enzymes exhibiting β-D-xylosidase activities in stem tissues of Arabidopsis. Plant Physiol 135: 867-878
20. Montes RA, Ranocha P, Martinez Y, Minic Z, Jouanin L et al. (2008) Cell wall modifications in Arabidopsis plants with altered α-L-arabinofuranosidase activity. Plant Physiol 147: 63-77
21. Sawa S, Demura T, Horiguchi G, Kubo M, Fukuda H (2005) The ATE genes are responsible for repression of transdifferentiation into xylem cells in Arabidopsis. Plant Physiol 137: 141-148
22. Suzuki M, Kato A, Nagata N, Komeda Y (2002) A xylanase, AtXyn1, is predominantly expressed in vascular bundles and four putative xylanase genes were identified in the Arabidopsis thaliana genome. Plant Cell Physiol 43: 759-767
23. Timell TE (1967) Recent progress in the chemistry of wood hemicellulose. Wood Sci Technol 1: 45-70
24. Yang H, Ichinose H, Nakajima M, Kobayashi H, Kaneko S (2006) Synergy between an α-L-arabinofuranosidase from Aspergillus oryzae and an endo-arabinanase from Streptomyces coelicolor for degradation of arabinan. Food Sci Technol Res 12: 43-49
25. Yoshida S, Kusakabe I, Matsuo N, Shimizu K, Yasui T, Murakami K (1990) Structure of rice-straw arabinoglucuronoxylan and specificity of Streptomyces xylanase toward the xylan. Agric Biol Chem 54: 449-457