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Volumn 401, Issue 3, 2010, Pages 478-492

Structural and dynamic determinants of ligand binding and regulation of cyclin-dependent kinase 5 by pathological activator p25 and inhibitory peptide CIP

Author keywords

Cdk5; CIP; Dynamics; Kinase; Regulation

Indexed keywords

CYCLIN DEPENDENT KINASE 5; INHIBITOR PROTEIN; PROTEIN CIP; PROTEIN P25; UNCLASSIFIED DRUG; CYCLIN DEPENDENT KINASE INHIBITOR; LIGAND; NERVE PROTEIN; P25 PROTEIN, HUMAN; PROTEIN BINDING;

EID: 77955276088     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2010.06.040     Document Type: Article
Times cited : (16)

References (39)
  • 1
    • 8644219655 scopus 로고    scopus 로고
    • Living with or without cyclins and cyclin-dependent kinases
    • Sherr C.J., Roberts J.M. Living with or without cyclins and cyclin-dependent kinases. Genes Dev. 2004, 18:2699.
    • (2004) Genes Dev. , vol.18 , pp. 2699
    • Sherr, C.J.1    Roberts, J.M.2
  • 2
    • 49549116190 scopus 로고    scopus 로고
    • Cdk5 phosphorylates PLD2 to mediate EGF-dependent insulin secretion
    • Lee H.Y., Jung H., Jang J.H., Suh P.G., Ryu S.H. Cdk5 phosphorylates PLD2 to mediate EGF-dependent insulin secretion. Cell Signalling 2008, 20:1787.
    • (2008) Cell Signalling , vol.20 , pp. 1787
    • Lee, H.Y.1    Jung, H.2    Jang, J.H.3    Suh, P.G.4    Ryu, S.H.5
  • 3
    • 0348010572 scopus 로고    scopus 로고
    • The regulation of cyclin-dependent kinase 5 activity through the metabolism of p35 or p39 Cdk5 activator
    • Hisanaga S., Saito T. The regulation of cyclin-dependent kinase 5 activity through the metabolism of p35 or p39 Cdk5 activator. Neurosignals 2003, 12:221.
    • (2003) Neurosignals , vol.12 , pp. 221
    • Hisanaga, S.1    Saito, T.2
  • 4
    • 0032527067 scopus 로고    scopus 로고
    • A novel disruption of cortical development in p35(-/-) mice distinct from reeler
    • Kwon Y.T., Tsai L.H. A novel disruption of cortical development in p35(-/-) mice distinct from reeler. J. Comp. Neurol. 1998, 395:510.
    • (1998) J. Comp. Neurol. , vol.395 , pp. 510
    • Kwon, Y.T.1    Tsai, L.H.2
  • 6
    • 55249086251 scopus 로고    scopus 로고
    • Hyperphosphorylation of microtubule-associated protein tau: a promising therapeutic target for Alzheimer disease
    • Gong C.X., Iqbal K. Hyperphosphorylation of microtubule-associated protein tau: a promising therapeutic target for Alzheimer disease. Curr. Med. Chem. 2008, 15:2321.
    • (2008) Curr. Med. Chem. , vol.15 , pp. 2321
    • Gong, C.X.1    Iqbal, K.2
  • 7
    • 17444391508 scopus 로고    scopus 로고
    • Recent evidence regarding a role for Cdk5 dysregulation in Alzheimer's disease
    • Monaco E.A. Recent evidence regarding a role for Cdk5 dysregulation in Alzheimer's disease. Curr. Alzheimer Res. 2004, 1:33.
    • (2004) Curr. Alzheimer Res. , vol.1 , pp. 33
    • Monaco, E.A.1
  • 8
    • 0034829801 scopus 로고    scopus 로고
    • The molecular basis of Alzheimer's disease and other neurodegenerative disorders
    • Maccioni R.B., Munoz J.P., Barbeito L. The molecular basis of Alzheimer's disease and other neurodegenerative disorders. Arch. Med. Res. 2001, 32:367.
    • (2001) Arch. Med. Res. , vol.32 , pp. 367
    • Maccioni, R.B.1    Munoz, J.P.2    Barbeito, L.3
  • 9
    • 0036470547 scopus 로고    scopus 로고
    • Cyclin-dependent kinase 5 (cdk5) activation requires interaction with three domains of p35
    • Amin N.D., Albers R.W., Pant H.C. Cyclin-dependent kinase 5 (cdk5) activation requires interaction with three domains of p35. J. Neurosci. Res. 2002, 67:354.
    • (2002) J. Neurosci. Res. , vol.67 , pp. 354
    • Amin, N.D.1    Albers, R.W.2    Pant, H.C.3
  • 10
    • 13244264765 scopus 로고    scopus 로고
    • A cdk5 inhibitory peptide reduces Tau hyperphosphorylation and apoptosis in neurons
    • Zheng Y.L., Kesavapany S., Gravell M., Hamilton R.S., Schubert M., Amin N.D., et al. A cdk5 inhibitory peptide reduces Tau hyperphosphorylation and apoptosis in neurons. EMBO J. 2005, 24:209.
    • (2005) EMBO J. , vol.24 , pp. 209
    • Zheng, Y.L.1    Kesavapany, S.2    Gravell, M.3    Hamilton, R.S.4    Schubert, M.5    Amin, N.D.6
  • 12
    • 0033224309 scopus 로고    scopus 로고
    • The structural basis for specificity of substrate and recruitment peptides for cyclin-dependent kinases
    • Brown N.R., Noble M.E., Endicott J.A., Johnson L.N. The structural basis for specificity of substrate and recruitment peptides for cyclin-dependent kinases. Nat. Cell Biol. 1999, 1:438.
    • (1999) Nat. Cell Biol. , vol.1 , pp. 438
    • Brown, N.R.1    Noble, M.E.2    Endicott, J.A.3    Johnson, L.N.4
  • 14
    • 0035937443 scopus 로고    scopus 로고
    • Two-state allosteric behavior in a single-domain signaling protein
    • Volkman B.F., Lipson D., Wemmer D.E., Kern D. Two-state allosteric behavior in a single-domain signaling protein. Science 2001, 291:2429.
    • (2001) Science , vol.291 , pp. 2429
    • Volkman, B.F.1    Lipson, D.2    Wemmer, D.E.3    Kern, D.4
  • 18
    • 70349305603 scopus 로고    scopus 로고
    • Structure and allosteric effects of low-molecular-weight activators on the protein kinase PDK1
    • Hindie V., Stroba A., Zhang H., Lopez-Garcia L.A., Idrissova L., Zeuzem S., et al. Structure and allosteric effects of low-molecular-weight activators on the protein kinase PDK1. Nat. Chem. Biol. 2009, 5:758.
    • (2009) Nat. Chem. Biol. , vol.5 , pp. 758
    • Hindie, V.1    Stroba, A.2    Zhang, H.3    Lopez-Garcia, L.A.4    Idrissova, L.5    Zeuzem, S.6
  • 19
    • 0033324780 scopus 로고    scopus 로고
    • Visualizing protein-protein interactions in the nucleus of the living cell
    • Day R.N., Nordeen S.K., Wan Y. Visualizing protein-protein interactions in the nucleus of the living cell. Mol. Endocrinol. 1999, 13:517.
    • (1999) Mol. Endocrinol. , vol.13 , pp. 517
    • Day, R.N.1    Nordeen, S.K.2    Wan, Y.3
  • 20
    • 67649891333 scopus 로고    scopus 로고
    • Quantification and its application in fluorescent microscopy imaging
    • Hamilton N. Quantification and its application in fluorescent microscopy imaging. Traffic 2009, 10:951.
    • (2009) Traffic , vol.10 , pp. 951
    • Hamilton, N.1
  • 21
    • 0003946510 scopus 로고    scopus 로고
    • Springer Series in Statistics, Springer, New York, NY
    • Jolliffe I.T. Principal component analysis 2002, Springer Series in Statistics, Springer, New York, NY. 2nd edit.
    • (2002) Principal component analysis
    • Jolliffe, I.T.1
  • 22
    • 0033945894 scopus 로고    scopus 로고
    • Evolution of cyclin-dependent kinases (CDKs) and CDK-activating kinases (CAKs): differential conservation of CAKs in yeast and metozoa
    • Liu J., Kipreos E.T. Evolution of cyclin-dependent kinases (CDKs) and CDK-activating kinases (CAKs): differential conservation of CAKs in yeast and metozoa. Mol. Biol. Evol. 2000, 17:1061.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1061
    • Liu, J.1    Kipreos, E.T.2
  • 24
    • 0242353366 scopus 로고    scopus 로고
    • Cdk7 functions as a Cdk5 activating kinase in brain
    • Rosales J.L., Han B., Lee K.Y. Cdk7 functions as a Cdk5 activating kinase in brain. Cell Physiol. Biochem. 2003, 13:285.
    • (2003) Cell Physiol. Biochem. , vol.13 , pp. 285
    • Rosales, J.L.1    Han, B.2    Lee, K.Y.3
  • 25
    • 0031058048 scopus 로고    scopus 로고
    • Identification of functional domains in the neuronal cdk5 activator protein
    • Poon R.Y.C., Lew J., Hunter T. Identification of functional domains in the neuronal cdk5 activator protein. J. Biol. Chem. 1997, 272:5703.
    • (1997) J. Biol. Chem. , vol.272 , pp. 5703
    • Poon, R.Y.C.1    Lew, J.2    Hunter, T.3
  • 27
    • 0038056330 scopus 로고    scopus 로고
    • Exploring the QM/MM replica path method: a pathway optimization for the chorismate to prephenate Claisen rearrangement catalyzed by chorismate mutase
    • Woodcock H.L., Hodoscek M., Sherwood P., Lee Y.S., Schafer H.F., Brooks B.R. Exploring the QM/MM replica path method: a pathway optimization for the chorismate to prephenate Claisen rearrangement catalyzed by chorismate mutase. Theor. Chem. Acc. 2003, 109:140.
    • (2003) Theor. Chem. Acc. , vol.109 , pp. 140
    • Woodcock, H.L.1    Hodoscek, M.2    Sherwood, P.3    Lee, Y.S.4    Schafer, H.F.5    Brooks, B.R.6
  • 28
    • 71349086344 scopus 로고    scopus 로고
    • Explaining the inhibition of cyclin-dependent kinase 5 by peptides derived from p25 with molecular dynamics simulations and MM-PBSA
    • Tan V.B., Zhang B., Lim K.M., Tay T.E. Explaining the inhibition of cyclin-dependent kinase 5 by peptides derived from p25 with molecular dynamics simulations and MM-PBSA. J. Mol. Mod. 2010, 16:1.
    • (2010) J. Mol. Mod. , vol.16 , pp. 1
    • Tan, V.B.1    Zhang, B.2    Lim, K.M.3    Tay, T.E.4
  • 31
    • 0012280704 scopus 로고    scopus 로고
    • Structure calculations of protein segments connecting domains with defined secondary structure: a simulated annealing Monte Carlo combined with biased scaled collective variables technique
    • Springer Verlag AG, New York, NY, K. Hark, T. Schlick (Eds.)
    • Hassan S.A., Mehler E.L., Weinstein H. Structure calculations of protein segments connecting domains with defined secondary structure: a simulated annealing Monte Carlo combined with biased scaled collective variables technique. Lecture Notes in Computational Science and Engineering 2002, vol. 24:197-231. Springer Verlag AG, New York, NY. K. Hark, T. Schlick (Eds.).
    • (2002) Lecture Notes in Computational Science and Engineering , vol.24 , pp. 197-231
    • Hassan, S.A.1    Mehler, E.L.2    Weinstein, H.3
  • 32
    • 33746268446 scopus 로고    scopus 로고
    • Ab initio computer modeling of loops in G-protein coupled receptors: lessons from the crystal structure of rhodopsin
    • Mehler E.L., Hassan S.A., Kortagere S., Weinstein H. Ab initio computer modeling of loops in G-protein coupled receptors: lessons from the crystal structure of rhodopsin. Proteins 2006, 64:673.
    • (2006) Proteins , vol.64 , pp. 673
    • Mehler, E.L.1    Hassan, S.A.2    Kortagere, S.3    Weinstein, H.4
  • 34
    • 0020771265 scopus 로고
    • Dynamics of a small globular protein in terms of low-frequency vibrational modes
    • Go N., Noguti T., Nishikawa T. Dynamics of a small globular protein in terms of low-frequency vibrational modes. Proc. Natl Acad. Sci. USA 1983, 80:3696.
    • (1983) Proc. Natl Acad. Sci. USA , vol.80 , pp. 3696
    • Go, N.1    Noguti, T.2    Nishikawa, T.3
  • 35
    • 0000991642 scopus 로고
    • Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor
    • Brooks B.R., Karplus M. Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor. Proc. Natl Acad. Sci. USA 1983, 80:6571.
    • (1983) Proc. Natl Acad. Sci. USA , vol.80 , pp. 6571
    • Brooks, B.R.1    Karplus, M.2
  • 36
    • 0022419152 scopus 로고
    • Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease, and lysozyme
    • Levitt M., Sander C., Stern P.S. Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease, and lysozyme. J. Mol. Biol. 1985, 181:423.
    • (1985) J. Mol. Biol. , vol.181 , pp. 423
    • Levitt, M.1    Sander, C.2    Stern, P.S.3
  • 37
    • 0000577041 scopus 로고
    • Large-amplitude nonlinear motions in proteins
    • Garcia A.E. Large-amplitude nonlinear motions in proteins. Phys. Rev. Lett. 1992, 68:2696.
    • (1992) Phys. Rev. Lett. , vol.68 , pp. 2696
    • Garcia, A.E.1
  • 39
    • 0026076090 scopus 로고
    • Collective motions in proteins: a covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations
    • Ichiye T., Karplus M. Collective motions in proteins: a covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations. Proteins 1991, 11:205-217.
    • (1991) Proteins , vol.11 , pp. 205-217
    • Ichiye, T.1    Karplus, M.2


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