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Volumn 42, Issue 9, 2010, Pages 1517-1524

Sequential changes in chromatin structure during transcriptional activation in the β globin LCR and its target gene

Author keywords

Chromatin; Histone; LCR; Transcription; Globin gene

Indexed keywords

BETA GLOBIN; DEOXYRIBONUCLEASE I; ERYTHROID KRUPPEL LIKE FACTOR; HEXAMETHYLENEBISACETAMIDE; HISTONE H3K27; HISTONE H3K36; HISTONE H3K4; HISTONE H3K9; NUCLEAR PROTEIN; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTION FACTOR MAFK; TRANSCRIPTION FACTOR TAL1; UNCLASSIFIED DRUG; ACETAMIDE DERIVATIVE; CHROMATIN; HEMOGLOBIN BETA CHAIN; HISTONE; NUCLEOSOME;

EID: 77955092505     PISSN: 13572725     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biocel.2010.05.009     Document Type: Article
Times cited : (12)

References (31)
  • 1
    • 39049120185 scopus 로고    scopus 로고
    • Tissue-specific histone modification and transcription factor binding in α globin gene expression
    • De Gobbi M., Anguita E., Hughes J., Sloane-Stanley J.A., Sharpe J.A., Koch C.M., et al. Tissue-specific histone modification and transcription factor binding in α globin gene expression. Blood 2007, 110:4503-4510.
    • (2007) Blood , vol.110 , pp. 4503-4510
    • De Gobbi, M.1    Anguita, E.2    Hughes, J.3    Sloane-Stanley, J.A.4    Sharpe, J.A.5    Koch, C.M.6
  • 2
    • 29444448047 scopus 로고    scopus 로고
    • On a chromosome far, far away: LCRs and gene regulation
    • Dean A. On a chromosome far, far away: LCRs and gene regulation. Trends Genet 2006, 22:38-45.
    • (2006) Trends Genet , vol.22 , pp. 38-45
    • Dean, A.1
  • 3
    • 34547776310 scopus 로고    scopus 로고
    • Activator-mediated recruitment of the MLL2 methyltransferase complex to the β-globin locus
    • Demers C., Chaturvedi C.P., Ranish J.A., Juban G., Lai P., Morle F., et al. Activator-mediated recruitment of the MLL2 methyltransferase complex to the β-globin locus. Mol Cell 2007, 27:573-584.
    • (2007) Mol Cell , vol.27 , pp. 573-584
    • Demers, C.1    Chaturvedi, C.P.2    Ranish, J.A.3    Juban, G.4    Lai, P.5    Morle, F.6
  • 4
    • 38549139593 scopus 로고    scopus 로고
    • Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation
    • Edmunds J.W., Mahadevan L.C., Clayton A.L. Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation. EMBO J 2008, 27:406-420.
    • (2008) EMBO J , vol.27 , pp. 406-420
    • Edmunds, J.W.1    Mahadevan, L.C.2    Clayton, A.L.3
  • 5
    • 70349660207 scopus 로고    scopus 로고
    • Histone hyperacetylation within the β-globin locus is context-dependent and precedes high-level gene expression
    • Fromm G., de Vries C., Byron R., Fields J., Fiering S., Groudine M., et al. Histone hyperacetylation within the β-globin locus is context-dependent and precedes high-level gene expression. Blood 2009, 114:3479-3488.
    • (2009) Blood , vol.114 , pp. 3479-3488
    • Fromm, G.1    de Vries, C.2    Byron, R.3    Fields, J.4    Fiering, S.5    Groudine, M.6
  • 6
    • 0029824043 scopus 로고    scopus 로고
    • Essential role of NF-E2 in remodeling of chromatin structure and transcriptional activation of the e{open}-globin gene in vivo by 5' hypersensitive site 2 of the β-globin locus control region
    • Gong Q.H., McDowell J.C., Dean A. Essential role of NF-E2 in remodeling of chromatin structure and transcriptional activation of the e{open}-globin gene in vivo by 5' hypersensitive site 2 of the β-globin locus control region. Mol Cell Biol 1996, 16:6055-6064.
    • (1996) Mol Cell Biol , vol.16 , pp. 6055-6064
    • Gong, Q.H.1    McDowell, J.C.2    Dean, A.3
  • 7
    • 0036923739 scopus 로고    scopus 로고
    • Dynamics of enhancer-promoter communication during differentiation-induced gene activation
    • Hatzis P., Talianidis I. Dynamics of enhancer-promoter communication during differentiation-induced gene activation. Mol Cell 2002, 10:1467-1477.
    • (2002) Mol Cell , vol.10 , pp. 1467-1477
    • Hatzis, P.1    Talianidis, I.2
  • 8
    • 33644699301 scopus 로고    scopus 로고
    • Microarray profiling of genes differentially expressed during erythroid differentiation of murine erythroleukemia cells
    • Heo H.S., Kim J.H., Lee Y.J., Kim S.H., Cho Y.S., Kim C.G. Microarray profiling of genes differentially expressed during erythroid differentiation of murine erythroleukemia cells. Mol Cells 2005, 20:57-68.
    • (2005) Mol Cells , vol.20 , pp. 57-68
    • Heo, H.S.1    Kim, J.H.2    Lee, Y.J.3    Kim, S.H.4    Cho, Y.S.5    Kim, C.G.6
  • 9
    • 0036187459 scopus 로고    scopus 로고
    • A defined locus control region determinant links chromatin domain acetylation with long-range gene activation
    • Ho Y., Elefant F., Cooke N., Liebhaber S. A defined locus control region determinant links chromatin domain acetylation with long-range gene activation. Mol Cell 2002, 9:291-302.
    • (2002) Mol Cell , vol.9 , pp. 291-302
    • Ho, Y.1    Elefant, F.2    Cooke, N.3    Liebhaber, S.4
  • 10
    • 67349186632 scopus 로고    scopus 로고
    • Expression of Pit-1 in nonsomatotrope cell lines induces human growth hormone locus control region histone modification and hGH-N transcription
    • Hogan K.A., Jefferson H.S., Karschner V.A., Shewchuk B.M. Expression of Pit-1 in nonsomatotrope cell lines induces human growth hormone locus control region histone modification and hGH-N transcription. J Mol Biol 2009, 390:26-44.
    • (2009) J Mol Biol , vol.390 , pp. 26-44
    • Hogan, K.A.1    Jefferson, H.S.2    Karschner, V.A.3    Shewchuk, B.M.4
  • 11
    • 28044437502 scopus 로고    scopus 로고
    • Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region
    • Im H., Grass J.A., Johnson K.D., Kim S., Boyer M.E., Imbalzano A.N., et al. Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region. Proc Natl Acad Sci U S A 2005, 102:17065-17070.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 17065-17070
    • Im, H.1    Grass, J.A.2    Johnson, K.D.3    Kim, S.4    Boyer, M.E.5    Imbalzano, A.N.6
  • 12
    • 0026439076 scopus 로고
    • Activation of the β-globin locus control region precedes commitment to the erythroid lineage
    • Jiménez G., Griffiths S.D., Ford A.M., Greaves M.F., Enver T. Activation of the β-globin locus control region precedes commitment to the erythroid lineage. Proc Natl Acad Sci U S A 1992, 89:10618-10622.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 10618-10622
    • Jiménez, G.1    Griffiths, S.D.2    Ford, A.M.3    Greaves, M.F.4    Enver, T.5
  • 13
    • 0036024954 scopus 로고    scopus 로고
    • Dissecting long-range transcriptional mechanisms by chromatin immunoprecipitation
    • Johnson K.D., Bresnick E.H. Dissecting long-range transcriptional mechanisms by chromatin immunoprecipitation. Methods 2002, 26:27-36.
    • (2002) Methods , vol.26 , pp. 27-36
    • Johnson, K.D.1    Bresnick, E.H.2
  • 14
    • 0041689973 scopus 로고    scopus 로고
    • Highly restricted localization of RNA polymerase II within a locus control region of a tissue-specific chromatin domain
    • Johnson K.D., Grass J.A., Park C., Im H., Choi K., Bresnick E.H. Highly restricted localization of RNA polymerase II within a locus control region of a tissue-specific chromatin domain. Mol Cell Biol 2003, 23:6484-6493.
    • (2003) Mol Cell Biol , vol.23 , pp. 6484-6493
    • Johnson, K.D.1    Grass, J.A.2    Park, C.3    Im, H.4    Choi, K.5    Bresnick, E.H.6
  • 15
    • 0037195069 scopus 로고    scopus 로고
    • Hematopoietic-specific activators establish an overlapping pattern of histone acetylation and methylation within a mammalian chromatin domain
    • Kiekhaefer C.M., Grass J.A., Johnson K.D., Boyer M.E., Bresnick E.H. Hematopoietic-specific activators establish an overlapping pattern of histone acetylation and methylation within a mammalian chromatin domain. Proc Natl Acad Sci U S A 2002, 99:14309-14314.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14309-14314
    • Kiekhaefer, C.M.1    Grass, J.A.2    Johnson, K.D.3    Boyer, M.E.4    Bresnick, E.H.5
  • 16
    • 33846905189 scopus 로고    scopus 로고
    • Distinctive signatures of histone methylation in transcribed coding and noncoding human β-globin sequences
    • Kim A., Kiefer C.M., Dean A. Distinctive signatures of histone methylation in transcribed coding and noncoding human β-globin sequences. Mol Cell Biol 2007, 27:1271-1279.
    • (2007) Mol Cell Biol , vol.27 , pp. 1271-1279
    • Kim, A.1    Kiefer, C.M.2    Dean, A.3
  • 17
    • 34848909389 scopus 로고    scopus 로고
    • Nucleosome and transcription activator antagonism at human β-globin locus control region DNase I hypersensitive sites
    • Kim A., Song S.H., Brand M., Dean A. Nucleosome and transcription activator antagonism at human β-globin locus control region DNase I hypersensitive sites. Nucleic Acids Res 2007, 35:5831-5838.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5831-5838
    • Kim, A.1    Song, S.H.2    Brand, M.3    Dean, A.4
  • 18
    • 0037022226 scopus 로고    scopus 로고
    • Human elongator facilitates RNA polymerase II transcription through chromatin
    • Kim J.H., Lane W.S., Reinberg D. Human elongator facilitates RNA polymerase II transcription through chromatin. Proc Natl Acad Sci U S A 2002, 99:1241-1246.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 1241-1246
    • Kim, J.H.1    Lane, W.S.2    Reinberg, D.3
  • 19
    • 34548786183 scopus 로고    scopus 로고
    • Epigenetic activation of the human growth hormone gene cluster during placental cytotrophoblast differentiation
    • Kimura A.P., Sizova D., Handwerger S., Cooke N.E., Liebhaber S.A. Epigenetic activation of the human growth hormone gene cluster during placental cytotrophoblast differentiation. Mol Cell Biol 2007, 27:6555-6568.
    • (2007) Mol Cell Biol , vol.27 , pp. 6555-6568
    • Kimura, A.P.1    Sizova, D.2    Handwerger, S.3    Cooke, N.E.4    Liebhaber, S.A.5
  • 20
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T. Chromatin modifications and their function. Cell 2007, 128:693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 21
    • 0035341465 scopus 로고    scopus 로고
    • Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci
    • Litt M.D., Simpson M., Recillas-Targa F., Prioleau M.N., Felsenfeld G. Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci. EMBO J 2001, 20:2224-2235.
    • (2001) EMBO J , vol.20 , pp. 2224-2235
    • Litt, M.D.1    Simpson, M.2    Recillas-Targa, F.3    Prioleau, M.N.4    Felsenfeld, G.5
  • 22
    • 0035850725 scopus 로고    scopus 로고
    • Quantification of DNaseI-sensitivity by real-time PCR: quantitative analysis of DNaseI-hypersensitivity of the mouse β-globin LCR
    • McArthur M., Gerum S., Stamatoyannopoulos G. Quantification of DNaseI-sensitivity by real-time PCR: quantitative analysis of DNaseI-hypersensitivity of the mouse β-globin LCR. J Mol Biol 2001, 313:27-34.
    • (2001) J Mol Biol , vol.313 , pp. 27-34
    • McArthur, M.1    Gerum, S.2    Stamatoyannopoulos, G.3
  • 23
    • 4444234841 scopus 로고    scopus 로고
    • Sequential histone modifications at Hoxd4 regulatory regions distinguish anterior from posterior embryonic compartments
    • Rastegar M., Kobrossy L., Kovacs E.N., Rambaldi I., Featherstone M. Sequential histone modifications at Hoxd4 regulatory regions distinguish anterior from posterior embryonic compartments. Mol Cell Biol 2004, 24:8090-8103.
    • (2004) Mol Cell Biol , vol.24 , pp. 8090-8103
    • Rastegar, M.1    Kobrossy, L.2    Kovacs, E.N.3    Rambaldi, I.4    Featherstone, M.5
  • 25
    • 38549165276 scopus 로고    scopus 로고
    • Drosophila UTX is a histone H3 Lys27 demethylase that colocalizes with the elongating form of RNA polymerase II
    • Smith E.R., Lee M.G., Winter B., Droz N.M., Eissenberg J.C., Shiekhattar R., et al. Drosophila UTX is a histone H3 Lys27 demethylase that colocalizes with the elongating form of RNA polymerase II. Mol Cell Biol 2008, 28:1041-1046.
    • (2008) Mol Cell Biol , vol.28 , pp. 1041-1046
    • Smith, E.R.1    Lee, M.G.2    Winter, B.3    Droz, N.M.4    Eissenberg, J.C.5    Shiekhattar, R.6
  • 26
    • 36749056884 scopus 로고    scopus 로고
    • A positive role for NLI/Ldb1 in long-range β-globin locus control region function
    • Song S.H., Hou C., Dean A. A positive role for NLI/Ldb1 in long-range β-globin locus control region function. Mol Cell 2007, 28:810-822.
    • (2007) Mol Cell , vol.28 , pp. 810-822
    • Song, S.H.1    Hou, C.2    Dean, A.3
  • 27
    • 33845451555 scopus 로고    scopus 로고
    • Profile of histone lysine methylation across transcribed mammalian chromatin
    • Vakoc C.R., Sachdeva M.M., Wang H., Blobel G.A. Profile of histone lysine methylation across transcribed mammalian chromatin. Mol Cell Biol 2006, 26:9185-9195.
    • (2006) Mol Cell Biol , vol.26 , pp. 9185-9195
    • Vakoc, C.R.1    Sachdeva, M.M.2    Wang, H.3    Blobel, G.A.4
  • 28
    • 46249112085 scopus 로고    scopus 로고
    • Combinatorial patterns of histone acetylations and methylations in the human genome
    • Wang Z., Zang C., Rosenfeld J.A., Schones D.E., Barski A., Cuddapah S., et al. Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 2008, 40:897-903.
    • (2008) Nat Genet , vol.40 , pp. 897-903
    • Wang, Z.1    Zang, C.2    Rosenfeld, J.A.3    Schones, D.E.4    Barski, A.5    Cuddapah, S.6
  • 29
    • 0033166761 scopus 로고    scopus 로고
    • A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme
    • Wittschieben B.O., Otero G., de Bizemont T., Fellows J., Erdjument-Bromage H., Ohba R., et al. A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme. Mol Cell 1999, 4:123-128.
    • (1999) Mol Cell , vol.4 , pp. 123-128
    • Wittschieben, B.O.1    Otero, G.2    de Bizemont, T.3    Fellows, J.4    Erdjument-Bromage, H.5    Ohba, R.6
  • 30
    • 34547195831 scopus 로고    scopus 로고
    • The locus control region activates serpin gene expression through recruitment of liver-specific transcription factors and RNA polymerase II
    • Zhao H., Friedman R.D., Fournier R.E. The locus control region activates serpin gene expression through recruitment of liver-specific transcription factors and RNA polymerase II. Mol Cell Biol 2007, 27:5286-5295.
    • (2007) Mol Cell Biol , vol.27 , pp. 5286-5295
    • Zhao, H.1    Friedman, R.D.2    Fournier, R.E.3
  • 31
    • 77952328090 scopus 로고    scopus 로고
    • USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the β-globin gene locus
    • Zhou Z., Li X., Deng C., Ney P.A., Huang S., Bungert J. USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the β-globin gene locus. J Biol Chem 2010, 285:15894-15905.
    • (2010) J Biol Chem , vol.285 , pp. 15894-15905
    • Zhou, Z.1    Li, X.2    Deng, C.3    Ney, P.A.4    Huang, S.5    Bungert, J.6


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