Biodegradation ability and dioxgenase genes of PAH-degrading Sphingomonas and Mycobacterium strains isolated from mangrove sediments

International Biodeterioration and Biodegradation

Volumn 64, Issue 6, 2010, Pages 419-426

  Guo, Chuling ^a,b   Dang, Zhi ^a   Wong, Yukshan ^c   Tam, Nora Fungyee ^b  

^a SOUTH CHINA UNIVERSITY OF TECHNOLOGY   (China)

^b CITY UNIVERSITY OF HONG KONG   (Hong Kong)

^c HONG KONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Hong Kong)

Author keywords

Biodegradation; Co culture; Dioxygenase gene; Mycobacterium; PAH degrading bacteria; Sphingomonads

Indexed keywords

BACTERIA; GENE ENCODING; PYRENE;

CO-CULTURES; DIOXYGENASE GENES; MYCOBACTERIUM; PAH-DEGRADING BACTERIA; SPHINGOMONADS;

BIODEGRADATION;

BACTERIUM; BIODEGRADATION; ENZYME ACTIVITY; GENE EXPRESSION; MANGROVE; PAH; SEDIMENT; SPECIES DIVERSITY;

BACTERIA (MICROORGANISMS); MYCOBACTERIUM; PARACOCCUS (BACTERIUM); PSEUDOMONAS; RHODOCOCCUS; SPHINGOMONAS;

EID: 77954955759     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2010.04.008     Document Type: Article

References (53)

1. Bastiaens L., Springael D., Wattiau P., Harms H., deWachter R., Verachtert H., Diels L. Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers. Appl. Environ. Microbiol. 2000, 66:1834-1841.
2. Bodour A.A., Wang J.M., Brusseau M.L., Maier R.M. Temporal change in culturable phenanthrene degraders in response to long-term exposure to phenanthrene in a soil column system. Environ. Microbiol. 2003, 5:888-895.
3. Boonchan S., Britz M.L., Stanley G.A. Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures. Appl. Environ. Microbiol. 2000, 66:1007-1019.
4. Bouchez M., Blanchet D., Vandecasteele J.P. Degradation of polycyclic aromatichydrocarbons by pure strains and by defined strain associations - inhibition phenomena and cometabolism. Appl. Microbiol. Biotechnol. 1995, 43:156-164.
5. Bouchez M., Blanchet D., Bardin V., Haeseler F., Vandecasteele J.P. Efficiency of defined strains and of soil consortia in the biodegradation of polycyclic aromatic hydrocarbon (PAH) mixtures. Biodegradation 1999, 10:429-435.
6. Brezna B., Khan A.A., Cerniglia C.E. Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbon-degrading Mycobacterium spp. FEMS Microbiol. Lett. 2003, 223:177-183.
7. Cerniglia C.E. Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 1992, 3:351-368.
8. Daane L.L., Harjono I., Zylstra G.J., Haggblom M.M. Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plants. Appl. Environ. Microbiol. 2001, 67:2683-2691.
9. Dagher F., Deziel E., Lirette P., Paquette G., Bisaillon J.G., Villemur R. Comparative study of five polycyclic aromatic hydrocarbon degrading bacterial strains isolated from contaminated soils. Can. J. Microbiol. 1997, 43:368-377.
10. Davison A.D., Veal D.A. Synergistic mineralization of biphenyl by Alcaligenes faecalis type II BSPI-2 and Sphingomonas paucimobilis BPSI-3. Lett. Appl. Microbiol. 1997, 25:58-62.
11. Dejonghe W., Berteloot E., Goris J., et al. Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading Variovorax strain. Appl. Environ. Microbiol. 2003, 69:1532-1541.
12. Demaneche S., Meyer C., Micoud J., Louwagie M., Willison J.C., Jouanneau Y. Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol. 2004, 70:6714-6725.
13. Desai A., Autenrieth R., Dimitriou-Christidis P., McDonald T. Biodegradation kinetics of select polycyclic aromatic hydrocarbon (PAH) mixtures by Sphingomonas paucimobilis EPA505. Biodegradation 2008, 19:223-233.
14. El-Tarabily K.A. Total microbial activity and microbial composition of a mangrove sediment are reduced by oil pollution at a site in the Arabian Gulf. Can. J. Microbiol. 2002, 48:176-182.
15. Hall K., Miller C., Sorensen D.L., Anderson A.J., Sims R.C. Development of a catabolically significant genetic probe for polycyclic aromatic hydrocarbon-degrading Mycobacteria in soil. Biodegradation 2005, 16:475-484.
16. Hedlund B.P., Geiselbrecht A.D., Bair T.J., Staley J.T. Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov. Appl. Environ. Microbiol. 1999, 65:251-259.
17. Ho Y., Jackson M., Yang Y., Mueller J.G., Pritchard P.H. Characterization of fluoranthene- and pyrene-degrading bacteria isolated from PAH-contaminated soils and sediments. J. Ind. Microbiol. Biotechnol 2000, 24:100-112.
18. Hwang S., Cutright T.J. Biodegradability of aged pyrene and phenanthrene in a natural soil. Chemosphere 2002, 47:891-899.
19. Juhasz A.L., Naidu R. Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: a review of the microbial degradation of benzo[a]pyrene. Int. Biodeterior. Biodegradation 2000, 45:57-88.
20. Kanaly R.A., Bartha R., Watanabe K., Harayama S. Rapid mineralization of benzo[a]pyrene by a microbial consortium growing on diesel fuel. Appl. Environ. Microbiol. 2000, 66:4205-4211.
21. Kästner M., Breuer-Jammali M., Mahro B. Impact of inoculation protocols, salinity, and pH on the degradation of polycyclic aromatic hydrocarbons (PAHs) and survival of PAH-degrading bacteria introduced into soil. Appl. Environ. Microbiol. 1998, 64:359-362.
22. Kauppi B., Lee K., Carredano E., Parales R.E., Gibson D.T., Eklund H., Ramaswamy S. Structure of an aromatic-ring-hydroxylating dioxygenase -naphthalene1,2-dioxygenase. Structure 1998, 6:571-586.
23. Ke L., Wang W.Q., Wong T.W.Y., Wong Y.S., Tam N.F.Y. Removal of pyrene from contaminated sediments by mangrove microcosms. Chemosphere 2003, 51:25-34.
24. Keck J., Sims R.C., Coover M., Park K., Symons B. Evidence for co-oxidation of polynuclear aromatic-hydrocarbons in soil. Water Res. 1989, 23:1467-1476.
25. Kiyohara H., Nagao K., Yana K. Rapid screen for bacteria degrading water-insoluble, solid hydrocarbons on agar plates. Appl. Environ. Microbiol. 1982, 43:454-457.
26. Lafortune I., Juteau P., Déziel E., et al. Bacterial diversity of a consortium degrading high-molecular-weight polycyclic aromatic hydrocarbons in a two-liquid phase biosystem. Microb. Ecol. 2009, 57:455-468.
27. Laurie A.D., Lloyd-Jones G. Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR. Appl. Environ. Microbiol. 2000, 66:1814-1817.
28. Leys N.M., Bastiaens L., Verstraete W., Springael D. Influence of the carbon/nitrogen/phosphorus ratio on polycyclic aromatic hydrocarbon degradation by Mycobacterium and Sphingomonas in soil. Appl. Microbiol. Biotechnol. 2005, 66:726-736.
29. Macek T., Mackova M., Kas J. Exploitation of plants for the removal of organics in environmental remediation. Biotechnol. Adv. 2000, 18:23-34.
30. Meharg A.A., Cairney J.W.G. Ectomycorrhizas - extending the capabilities of rhizosphere remediation?. Soil Biol. Biochem. 2000, 32:1475-1484.
31. Moody J.D., Freeman J.P., Cerniglia C.E. Degradation of benz[a] anthracene by Mycobacterium vanbaalenii strain PYR-1. Biodegradation 2005, 16:513-526.
32. Moody J.D., Freeman J.P., Fu P.P., Cerniglia C.E. Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1. Appl. Environ. Microbiol. 2004, 70:340-345.
33. Mueller J.G., Devereux R., Santavy D.L., Lantz S.E., Willis S.G., Pritchard P.H. Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils. Antonie Van Leeuwenhoek 1997, 71:329-343.
34. Neori A., Reddy K.R., Ciskova-Koncalova H., Agami M. Bioactive chemicals and biological-biochemical activities and their functions in rhizospheres of wetland plants. Bot. Rev. 2000, 66:350-378.
35. Pinyakong O., Habe H., Omori T. The unique aromatic catabolic genes in Sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs). J. Gen. Appl. Microbiol. 2003, 49:1-19.
36. Pizzul L., del Pilar Castillo M., Stenström J. Characterization of selected actinomycetes degrading polyaromatic hydrocarbons in liquid culture and spiked soil. World J. Microb. Biotechnol. 2006, 22:745-752.
37. Ramsay M.A., Swannell R.P.J., Shipton W.A., Duke N.C., Hill R.T. Effect of bioremediation on the microbial community in oiled mangrove sediments. Mar. Pollut. Bull. 2000, 41:413-419.
38. Shi T., Fredrickson J.K., Balkwill D.L. Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface. J. Ind. Microbiol. Biotechnol 2001, 26:283-289.
39. Shimp J.F., Tracy J.C., Davis L.C., Lee E., Huang W., Erickson L.E. Beneficial effects of plants in the remediation of soil and groundwater contaminated with organic materials. Crit. Rev. Environ. Sci. Biotechnol. 1993, 23:41-73.
40. Sho M., Hamel C., Greer C.W. Two distinct gene clusters encode pyrene degradation in Mycobacterium sp. strain S65. FEMS Microbiol. Ecol. 2004, 48:209-220.
41. Simon M.J., Osslund T.D., Saunders R., Ensley B.D., Suggs S., Harcourt A., Suen W.C., Cruden D.L., Gibson D.T., Zylstra G.J. Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and Ncib-9816-4. Gene 1993, 127:31-37.
42. Sorensen S.R., Ronen Z., Aamand J. Growth in coculture stimulates metabolism of the phenylurea herbicide isoproturon by Sphingomonas sp. strain SRS2. Appl. Environ. Microbiol. 2002, 68:3478-3485.
43. Stolz A. Molecular characteristics of xenobiotic-degrading sphingomonads. Appl. Microbiol. Biotechnol. 2009, 81:793-811.
44. Tam N.F., Wong Y.S. Effectiveness of bacterial inoculum and mangrove plants on remediation of sediment contaminated with polycyclic aromatic hydrocarbons. Mar. Pollut. Bull. 2008, 57:716-726.
45. Uyttebroek M., Ortega-Calvo J.-J., Breugelmans P., Springael D. Comparison of mineralization of solid-sorbed phenanthrene by polycyclic aromatic hydrocarbon (PAH)-degrading Mycobacterium spp. and Sphingomonas spp. Appl. Microbiol. Biotechnol. 2006, 72:829-836.
46. Vinas M., Sabate J., Espuny M.J., Solanas A.M. Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil. Appl. Environ. Microbiol. 2005, 71:7008-7018.
47. Wick L.Y., Pasche N., Bernasconi S.M., Pelz O., Harms H. Characterization of multiple-substrate utilization by anthracene-degrading Mycobacterium frederiksbergense LB501T. Appl. Environ. Microbiol. 2003, 69:6133-6142.
48. Widada J., Nojiri H., Omori T. Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation. Appl. Microbiol. Biotechnol. 2002, 60:45-59.
49. Ye D.Y., Siddiqi M.A., Maccubbin A.E., Kumar S., Sikka H.C. Degradation of polynuclear aromatic hydrocarbons by Sphingomonas paucimobilis. Environ. Sci. Technol. 1996, 30:136-142.
50. Yu S.H., Ke L., Wong Y.S., Tam N.F.Y. Degradation of polycyclic aromatic hydrocarbons (PAHS) by a bacterial consortium enriched from mangrove sediments. Environ. Int. 2005, 31:149-154.
51. Yuan S.Y., Wei S.H., Chang B.V. Biodegradation of polycyclic aromatic hydrocarbons by a mixed culture. Chemosphere 2000, 41:1463-1468.
52. Zhou H.W., Guo C.L., Wong Y.S., Tam N.F.Y. Genetic diversity of dioxygenase genes in polycyclic aromatic hydrocarbon-degrading bacteria isolated from mangrove sediments. FEMS Microbiol. Lett. 2006, 262:148-157.
53. Zocca C., Di Gregorio S., Visentini F., Vallini G. Biodiversity amongst cultivable polycyclic aromatic hydrocarbon-transforming bacteria isolated from an abandoned industrial site. FEMS Microbiol. Lett. 2004, 238:375-382.