메뉴 건너뛰기




Volumn 16, Issue 5, 2005, Pages 475-484

Development of a catabolically significant genetic probe for polycyclic aromatic hydrocarbon-degrading Mycobacteria in soil

Author keywords

Biodegradation; Bioremediation; Dioxygenase; Gene probe; Mycobacteria; Polycyclic aromatic hydrocarbon

Indexed keywords

BIODEGRADATION; CONTAMINATION; DNA; ENZYME INHIBITION; ENZYMES; GENES; GENETIC ENGINEERING; HYDROCARBONS; SOILS;

EID: 14944338930     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-004-5669-y     Document Type: Article
Times cited : (24)

References (39)
  • 1
    • 0036220879 scopus 로고    scopus 로고
    • Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification
    • C Bakermans E Madsen 2001 Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification J. Microbiol. Methods 50 75 84
    • (2001) J. Microbiol. Methods , vol.50 , pp. 75-84
    • Bakermans, C.1    Madsen, E.2
  • 3
    • 0037104964 scopus 로고    scopus 로고
    • A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene
    • HR Beller SR Kane TC Legler PJ Alvarez 2002 A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene Environ. Sci. Technol. 36 3977 3984
    • (2002) Environ. Sci. Technol. , vol.36 , pp. 3977-3984
    • Beller, H.R.1    Kane, S.R.2    Legler, T.C.3    Alvarez, P.J.4
  • 4
    • 0038771927 scopus 로고    scopus 로고
    • Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbon-degrading Mycobacterium spp
    • B Brezna AA Kahn CE Cerneglia 2003 Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbon-degrading Mycobacterium spp FEMS Microbiol. Let. 223 177 183
    • (2003) FEMS Microbiol. Let. , vol.223 , pp. 177-183
    • Brezna, B.1    Kahn, A.A.2    Cerneglia, C.E.3
  • 5
    • 0021700508 scopus 로고
    • Microbial metabolism of polycyclic aromatic hydrocarbons
    • CE Cerniglia 1984 Microbial metabolism of polycyclic aromatic hydrocarbons Adv. Appl. Microbiol. 30 31 71
    • (1984) Adv. Appl. Microbiol. , vol.30 , pp. 31-71
    • Cerniglia, C.E.1
  • 7
    • 33847168352 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • CE Cerniglia 1992b Biodegradation of polycyclic aromatic hydrocarbons Biodegradation 3 351 368
    • (1992) Biodegradation , vol.3 , pp. 351-368
    • Cerniglia, C.E.1
  • 8
    • 0027263427 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • CE Cerniglia 1993 Biodegradation of polycyclic aromatic hydrocarbons Current Opin. Biotechnol. 4 331 338
    • (1993) Current Opin. Biotechnol. , vol.4 , pp. 331-338
    • Cerniglia, C.E.1
  • 9
    • 0035347319 scopus 로고    scopus 로고
    • Mycobacterium diversity and pyrene mineralization in petroleum- contaminated soils
    • 5
    • P Cheung BK Kinkle 2001 Mycobacterium diversity and pyrene mineralization in petroleum-contaminated soils Appl. Environ. Microbiol. 67 5 2222 2229
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2222-2229
    • Cheung, P.1    Kinkle, B.K.2
  • 10
    • 0032976489 scopus 로고    scopus 로고
    • Isolation and characterization of a Mycobacterium species capable of degrading three- and four-ring aromatic and aliphatic hydrocarbons
    • SA Churchill JP Harper PF Churchill 1999 Isolation and characterization of a Mycobacterium species capable of degrading three- and four-ring aromatic and aliphatic hydrocarbons Appl. Environ. Microbiol. 65 549 552
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 549-552
    • Churchill, S.A.1    Harper, J.P.2    Churchill, P.F.3
  • 11
    • 14944341422 scopus 로고    scopus 로고
    • Epicentre, Madison, WI
    • Epicentre, 2003, Soil master DNA extraction kit. Epicentre, Madison, WI Available online at http://www.epicentre.com/
    • (2003) Soil Master DNA Extraction Kit
  • 13
    • 0030366191 scopus 로고    scopus 로고
    • Aerobic biotransformation of polycyclic aromatic hydrocarbons and associated metabolites in soil
    • JS Ginn J William WJ Doucette RC Sims 1996 Aerobic biotransformation of polycyclic aromatic hydrocarbons and associated metabolites in soil Polycyclic Aromat. Compd. 11 43 55
    • (1996) Polycyclic Aromat. Compd. , vol.11 , pp. 43-55
    • Ginn, J.S.1    William, J.2    Doucette, W.J.3    Sims, R.C.4
  • 14
    • 0024100908 scopus 로고
    • Microbial metabolism of polycyclic aromatic hydrocarbons: Isolation and characterization of a pyrene-degrading bacterium
    • MA Heitkamp W Franklin CE Cerniglia 1988 Microbial metabolism of polycyclic aromatic hydrocarbons: isolation and characterization of a pyrene-degrading bacterium Appl. Environ. Microbiol. 54 2549 2555
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2549-2555
    • Heitkamp, M.A.1    Franklin, W.2    Cerniglia, C.E.3
  • 16
    • 0035514680 scopus 로고    scopus 로고
    • Detection and quantification of methyl tert-butyl ether-degrading strain PM1 by real-time TaqMan PCR
    • 11
    • KR Hristova CM Lutenegger KM Scow 2001 Detection and quantification of methyl tert-butyl ether-degrading strain PM1 by real-time TaqMan PCR Appl. Environ. Microbiol. 67 11 5154 5160
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5154-5160
    • Hristova, K.R.1    Lutenegger, C.M.2    Scow, K.M.3
  • 17
    • 0030274106 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbon biodegradation as a function of oxygen tension in contaminated soil
    • CJ Hurst RC Sims JL Sims DL Sorensen JE McLean S Huling 1996 Polycyclic aromatic hydrocarbon biodegradation as a function of oxygen tension in contaminated soil J. Haz. Mat. 51 193 208
    • (1996) J. Haz. Mat. , vol.51 , pp. 193-208
    • Hurst, C.J.1    Sims, R.C.2    Sims, J.L.3    Sorensen, D.L.4    McLean, J.E.5    Huling, S.6
  • 18
    • 0035432965 scopus 로고    scopus 로고
    • Molecular cloning, nucleotide sequence, and expression of genes encoding a polycyclic aromatic ring dioxygenase from Mycobacterium nsp
    • AA Khan R Wang W Cao DR Doerge D Wennerstrom CE Cerneglia 2001 Molecular cloning, nucleotide sequence, and expression of genes encoding a polycyclic aromatic ring dioxygenase from Mycobacterium nsp strain PYR-1. Appl. Environ. Microbiol. 67 3577 3585
    • (2001) Strain PYR-1. Appl. Environ. Microbiol. , vol.67 , pp. 3577-3585
    • Khan, A.A.1    Wang, R.2    Cao, W.3    Doerge, D.R.4    Wennerstrom, D.5    Cerneglia, C.E.6
  • 19
    • 0036866607 scopus 로고    scopus 로고
    • Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp strain PYR-1, as Mycobacterium vanbaleenii sp. nov
    • 6
    • AA Khan SJ Kim DD Paine CE Cerniglia 2002 Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp strain PYR-1, as Mycobacterium vanbaleenii sp. nov Int. J. Syst. Evol. Microbiol. 52 6 1997 2002
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1997-2002
    • Khan, A.A.1    Kim, S.J.2    Paine, D.D.3    Cerniglia, C.E.4
  • 20
    • 0141919038 scopus 로고    scopus 로고
    • 16S rRNA Gene-Based Detection of Tetrachloroethene-Dechlorinating Desulfuromonas and Dehalococcoides Species
    • 4
    • FE Loffler Q Sun J Li JM Tiedje 2000 16S rRNA Gene-Based Detection of Tetrachloroethene-Dechlorinating Desulfuromonas and Dehalococcoides Species Appl. Environ. Microbiol. 66 4 1369 1374
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1369-1374
    • Loffler, F.E.1    Sun, Q.2    Li, J.3    Tiedje, J.M.4
  • 21
    • 0025947593 scopus 로고
    • Determining in situ biodegradation
    • EL Madsen 1991 Determining in situ biodegradation Environ. Sci. Tech. 25 1662 1673
    • (1991) Environ. Sci. Tech. , vol.25 , pp. 1662-1673
    • Madsen, E.L.1
  • 22
    • 0036905765 scopus 로고    scopus 로고
    • Effect of leaf surface waxes on leaf colonization by Pantoea agglomerans and Clavibacter michiganensis
    • 12
    • LM Marcell GA Beattie 2002 Effect of leaf surface waxes on leaf colonization by Pantoea agglomerans and Clavibacter michiganensis Mol. Plant Microbe. 15 12 1236 1244
    • (2002) Mol. Plant Microbe. , vol.15 , pp. 1236-1244
    • Marcell, L.M.1    Beattie, G.A.2
  • 23
    • 0036141651 scopus 로고    scopus 로고
    • The effect of polycyclic aromatic hydrocarbons on the degradation of benzo[a]pyrene by Mycobacterium sp
    • 12
    • SL McLellan D Warshawsky JR Shann 2002 The effect of polycyclic aromatic hydrocarbons on the degradation of benzo[a]pyrene by Mycobacterium sp strain RJGII-135. Environ. Toxicol. Chem. 21 12 253 259
    • (2002) Strain RJGII-135. Environ. Toxicol. Chem. , vol.21 , pp. 253-259
    • McLellan, S.L.1    Warshawsky, D.2    Shann, J.R.3
  • 24
  • 25
    • 0035000850 scopus 로고    scopus 로고
    • Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria
    • R Moser U Stahl 2000 Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria Appl. Microbiol. Biotech. 55 609 618
    • (2000) Appl. Microbiol. Biotech. , vol.55 , pp. 609-618
    • Moser, R.1    Stahl, U.2
  • 26
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • G Muyzer Waal EC de AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA Appl. Environ. Microbiol. 59 695 700
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 29
    • 0030041063 scopus 로고    scopus 로고
    • Degradation of pyrene, benzo [a] anthracene and benzo [a] pyrene by a Mycobacterium sp strain RJGII-135, isolated from a former coal gasification site
    • J Schneider R Grosser K Jayasimhulu W Xue D Warshawsky 1996 Degradation of pyrene, benzo [a] anthracene and benzo [a] pyrene by a Mycobacterium sp strain RJGII-135, isolated from a former coal gasification site Appl. Environ. Microbiol. 62 13 19
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 13-19
    • Schneider, J.1    Grosser, R.2    Jayasimhulu, K.3    Xue, W.4    Warshawsky, D.5
  • 31
    • 0031803557 scopus 로고    scopus 로고
    • Nucleic acid analytical approaches in bioremediation: Site assessment and characterization
    • RD Stapleton R Steven 1998 Nucleic acid analytical approaches in bioremediation: site assessment and characterization J. Microbiol. Methods 32 165 178
    • (1998) J. Microbiol. Methods , vol.32 , pp. 165-178
    • Stapleton, R.D.1    Steven, R.2
  • 33
    • 0026708461 scopus 로고
    • Rapid method for seperation of bacterial DNA from humic substances in sediments for polymerase chain reaction
    • YL Tsai BH Olsen 1992 Rapid method for seperation of bacterial DNA from humic substances in sediments for polymerase chain reaction Appl. Envriron. Microbiol. 5 2292 2295
    • (1992) Appl. Envriron. Microbiol. , vol.5 , pp. 2292-2295
    • Tsai, Y.L.1    Olsen, B.H.2
  • 35
    • 0030041506 scopus 로고    scopus 로고
    • PCR detection of polycyclic aromatic hydrocarbon-degrading Mycobacteria
    • 1
    • R Wang A Luneau W Cao CE Cerneglia 1996 PCR detection of polycyclic aromatic hydrocarbon-degrading Mycobacteria Environ. Sci. Tech. 30 1 307 311
    • (1996) Environ. Sci. Tech. , vol.30 , pp. 307-311
    • Wang, R.1    Luneau, A.2    Cao, W.3    Cerneglia, C.E.4
  • 36
    • 0032906465 scopus 로고    scopus 로고
    • In situ, real-time catabolic gene expression: Extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater
    • MS Williams C Bakermans EL Madsen 1999 In situ, real-time catabolic gene expression: Extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater Appl. Environ. Microbiol. 65 80 87
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 80-87
    • Williams, M.S.1    Bakermans, C.2    Madsen, E.L.3
  • 37
    • 0033976229 scopus 로고    scopus 로고
    • The measurement of toluene dioxygenase activity in biofilm culture of Pseudomonas putida F1
    • H Woo J Sanseverino CD Cox KG Robinson GS Sayler 2000 The measurement of toluene dioxygenase activity in biofilm culture of Pseudomonas putida F1 J. Microbiol. Methods 40 181 191
    • (2000) J. Microbiol. Methods , vol.40 , pp. 181-191
    • Woo, H.1    Sanseverino, J.2    Cox, C.D.3    Robinson, K.G.4    Sayler, G.S.5
  • 38
    • 0035656126 scopus 로고    scopus 로고
    • Development and evaluation of functional gene arrays for detection of selected genes in the environment
    • 12
    • L Wu DK Thompson G Li RA Hurt JM Tiedje J Zhou 2001 Development and evaluation of functional gene arrays for detection of selected genes in the environment Appl. Environ. Microbiol. 67 12 5780
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5780
    • Wu, L.1    Thompson, D.K.2    Li, G.3    Hurt, R.A.4    Tiedje, J.M.5    Zhou, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.