Variety identification and genetic relationships of mungbean and blackgram in Thailand based on morphological characters and ISSR analysis

African Journal of Biotechnology

Volumn 9, Issue 27, 2010, Pages 4152-4164

  Tantasawat, Piyada ^a   Trongchuen, Juthamas ^a   Prajongjai, Thongchai ^a   Thongpae, Thanawit ^a   Petkhum, Chutamas ^a   Seehalak, Worapa ^a   Machikowa, Thitiporn ^a  

^a SURANAREE UNIVERSITY OF TECHNOLOGY   (Thailand)

Author keywords

Genetic diversity; Inter simple sequence repeat; Marker; Vigna mungo; Vigna radiata

Indexed keywords

PLANT DNA;

AGRONOMIC TRAIT; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BEAN; BLACKGRAM; CONTROLLED STUDY; DNA ISOLATION; GENE CLUSTER; GENETIC SIMILARITY; GENETIC VARIABILITY; GENOTYPE; INTER SIMPLE SEQUENCE REPEAT; LANDRACE; MOLECULAR PHYLOGENY; MUNG BEAN; NONHUMAN; PLANT BREEDING; PLANT GENETICS; PLANT MORPHOLOGY; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; SPECIES DIFFERENCE; THAILAND; VARIETAS;

VIGNA; VIGNA MUNGO; VIGNA RADIATA;

EID: 77954874523     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (57)

1. Ajibade SR, Weeden NF, Chite SM (2000). Inter simple sequence repeat analysis of genetic relationships in the genus Vigna. Euphytica 111: 47-55.
2. Autrique E, Nachit MM, Monneveux P, Tanksley SD, Sorrells ME (1996). Genetic diversity in durum wheat based on RFLPs, morphological traits, and coefficient of parentage. Crop Sci. 36: 735-742.
3. Bisht IS, Bhat KV, Lakhanpaul S, Latha M, Jayan PK, Biswas BK, Singh AK (2005). Diversity and genetic resources of wild Vigna species in India. Genet. Res. Crop Evol. 52: 53-68.
4. Blair MW, Panaud O, McCough SR (1999). Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.). Theor. Appl. Genet. 98: 780-792.
5. Boonpradub S, Chatasiri M (1997). Quality improvement and yield of Vigna mungo for exportation, Department of Agriculture, Thailand (in Thai, with English abstract).
6. Chaitieng B, Kaga A, Han OK, Wang, XW, Wongkaew S, Laosuwan P, Tomooka N, Vaughan DA (2002). Mapping a new source of resistance to powdery mildew in mungbean. Plant Breed. 121: 521-525.
7. Chaitieng B, Kaga A, Tomooka N, Isemura T, Kuroda Y, Vaughan DA (2006). Development of a black gram [Vigna mungo (L.) Hepper] linkage map and its comparison with an azuki bean [Vigna angularis (Willd.) Ohwi and Ohashi] linkage map. Theor. Appl. Genet. 113: 1261-1269.
8. Chandel KPS, Lester RN, Starling RJ (1984). The wild ancestors of urd and mungbeans (Vigna mungo (L.) Hepper and V. radiata (L.) Wilczek). Bot. J. Linnean Soc. 89: 85-86.
9. Chawla HS (2002). Introduction to plant biotechnology, 2nd edn, Science Publishers, Inc., Enfield.
10. Ehlers JD, Hall AE (1997). Cowpea (Vigna unguiculata L. Walp.). Field Crops Res. 53: 187-204.
11. Fatokun CA, Danesh D, Young ND, Stewart EL (1993). Molecular taxonomic relationships in the genus Vigna based on RFLP analysis. Theor. Appl. Genet. 86: 97-104.
12. Gaffor A, Sharif A, Ahmad Z, Zahid MA, Rabbani MA (2001). Genetic diversity in blackgram (Vigna mungo L. Hepper). Field Crop Res. 69:183-190.
13. Ghafoor A, Ahmad Z, Qureshi AS, and Bashir M (2002). Genetic relationship in Vigna mungo (L.) Hepper and V. radiata (L.) R. Wilczek based on morphological traits and SDS-PAGE. Euphytica 123: 367-378.
14. Johns MA, Skroch PW, Nienhuis J, Hinrichsen P, Bascur G, Munoz-Schick C (1997). Gene pool classification of common bean landraces from Chile based on RAPD and morphological data. Crop Sci. 37:605-613.
15. Kaga A, Tamooka N, Egawa Y, Hosaka K, Kamijima O (1996). Species relationships in subgenus Ceratotropis (genus Vigna) as revealed by RAPD analysis. Euphytica 88: 17-24.
16. Keim P, Beavis W, Schupp J, Freestone R (1992). Evaluation of soybean RFLP marker diversity in adapted germplasm. Theor. Appl. Genet. 85: 205-212.
17. Kochieva EZ, Ryzhova NN, Khrapalova IA, Pukhalskyi VA (2002). Genetic diversity and phylogenetic relationships in the genus Lycopersicon (Tourn.) Mill. as revealed by inter-simple sequence repeat (ISSR) analysis. Russ. J. Genet. 38: 958-966.
18. Lakhanpaul S, Chadha S, Bhat KV (2000). Random amplified polymorphic DNA (RAPD) analysis in Indian mungbean (Vigna radiate (L.) Wilczek) cultivars. Genetica 109: 227-234.
19. Lapointe FJ, Legendre P (1992). Statistical significance of the matrix correlation coefficient for comparing independent phylogenetic trees. Syst. Biol. 41: 378-384.
20. Li CD, Fatokun CA, Ubi B, Singh BB, Scoles GJ (2001). Determining genetic similarities and relationships among cowpea breeding lines and cultivars by microsatellite markers. Crop Sci. 41: 189-197.
21. Li Z, Nelson RL (2001). Genetic diversity among soybean accessions from three countries measured by RAPDs. Crop Sci. 41: 1337-1347.
22. Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220.
23. Mignouna HD, Ng NQ, Ikea J, Thottapilly G (1998). Genetic diversity in cowpea as revealed by random amplified polymorphic DNA. J. Genet. Breed. 53: 151-159.
24. Miyagi M, Humphry M, Ma ZY, Lambrides CJ, Bateson M, Liu CJ (2004). Construction of bacterial artificial chromosome libraries and their application in developing PCR-based markers closely linked to a major locus conditioning bruchid resistance in mungbean (Vigna radiata L. Wilczek). Theor. Appl. Genet. 110: 151-156.
25. Moreno S, Martin JP, Ortiz JM (1998). Inter-simple sequence repeats PCR for characterization of closely related grapevine germplasm. Euphytica 101: 117-125.
26. Na Pattalung SS, Poonsavasde P (1995). Laboratory evaluation of some wild Vigna spp. for resistance to common cutworm leaf feeding. In: Proceedings of the Sixth Mungbean Workshop held at Suranaree University of Technology, Thailand, 14-16 June 1995, pp 183-191 (in Thai, with English abstract).
27. Narvel JM, Fehr WR, Chu W-C, Grant D, Shoemaker RC (2000). Simple sequence repeat diversity among soybean plant introductions and elite genotypes. Crop Sci. 40: 1452-1458.
28. Ngampongsai S, Chotechuen S, Promkum W, Wongpiyasatid A. (2004). Induced mutations in mungbean breeding program. In: Proceedings of the National Mungbean Research Conference IX held at Lampang Wiengthong Hotel, Thailand, 5-6 March 2004, pp 111-118 (in Thai, with English abstract).
29. Ngampongsai S, Watanasit A, Tanomsub W, Tanomsub S (2000). Exploration, collection and evaluation of wild Vigna species. In: Proceedings of the National Mungbean Research Conference VIII held at Kasetsart University, Thailand, 18-20 January 2000, pp 21-30 (in Thai, with English abstract).
30. Paterson AH, Tanksley SD, Sorrells ME (1991). DNA markers in plant improvement. Adv. Agron. 46: 39-90.
31. Patzak J (2001). Comparison of RAPD, STS, ISSR and AFLP molecular methods used for assessment of genetic diversity in hop (Humulus lupulus L.). Euphytica 121: 9-18.
32. Phoomthaisong J, Kraokaw S, Thanomsub W, Areeruk S (2004). Responses of mungbean to iron spraying in calcareous soil. In: Proceedings of the National Mungbean Research Conference IX held at Lampang Wiengthong Hotel, Thailand, 5-6 March 2004, pp 51-57 (in Thai, with English abstract).
33. Plant germplasm database (2004). Mungbean/blackgram. pp: 1-7. Department of Agriculture, Ministry of Agriculture and Cooperatives. [Online]. Available from: http://www.doae.go.th/ plant/mungbn.html [Accessed 14 March 2008].
34. Pradeep Reddy M, Sarla N, Siddiq EA (2002). Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica 128: 9-17.
35. Prammanee S, Noknoy K, Burns P, Burns T, Ngampongsai S, Iamsupasit N (2000). DNA fingerprinting of the certified mungbean and blackgram cultivars. In: Proceedings of the National Mungbean Research Conference VIII held at Kasetsart University, Thailand, 18-20 January 2000, pp 6-12 (in Thai, with English abstract).
36. Prevost A, Wilkinson MJ (1999). A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98: 107-112.
37. Rohlf FJ (2000). NTSYS numerical taxonomy and multivariate analysis system version 2.2 user guide, Applied Biostatistics, Inc., New York.
38. Saghai Maroof K, Soliman M, Jorgensen RA, Allard RW (1984). Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. PNAS 81: 8014-8018.
39. Sambrook J, Russell DW (2001). Molecular cloning: A laboratory manual, Cold Spring Harbor Laboratory Press, New York.
40. Sanchez de la Hoz M.P., Davila JA, Loarce Y, Ferrer E (1996). Simple sequence repeat primers used in polymerase chain reaction amplifications to study genetic diversity in barley. Genome, 39: 112-117.
41. Santalla M, Power JB, Davey MR (1998). Genetic diversity in mungbean germplasm revealed by RAPD markers. Plant Breed. 117: 473-478.
42. Sarobol N (1997). Mungbean: Past, present and future. In: Proceedings of the National Mungbean Research Conference VII held at Golden Grand Hotel, Thailand, 2-4 December 1997, pp: 1-20 (in Thai, with English abstract).
43. SAS Institute. 1996. SAS/STAT user's guide: version 6, 4th edn., volume 1 and 2, SAS Institute Inc., Cary, N.C.
44. Seehalak W, Tomooka N, Waranyuwat A, Thipyapong P, Laosuwan P, Kaga A, Vaughan DA (2006). Genetic diversity of the Vigna germplasm from Thailand and neighboring regions revealed by AFLP analysis. Genet. Res. Crop Evol. 63: 1043-1059.
45. Simioniuc D, Uptmoor R, Friedt W, Ordon F (2002). Genetic diversity and relationships among pea cultivars revealed by RAPDs and AFLPs. Plant Breed. 121: 429-435.
46. Smith JSC, Smith OS (1989). The description and assessment of distances between inbred lines of maize. II. The utility of morphological, biochemical and genetic descriptors and a scheme for testing of distinctiveness between inbred lines. Maydica 34: 151-161.
47. Souframanien J, Gopalakrishna T (2004). A comparative analysis of genetic diversity in blackgram genotypes using RAPD and ISSR markers. Theor. Appl. Genet. 109: 1687-1693.
48. Srinives P (2006). Research direction and legume crop development. In: Proceedings of the National Legume Crop Research Conference I held at Rimkok Resort Hotel, Chiang Rai, Thailand, August 2006, pp 389 (in Thai, with English abstract).
49. Srinives P, Kaveeta R, Jene-Kritiya A, Indonprai T (2003). Kasetsart University. [Online]. Available from: http://www.ku.ac.th/kaset60/ku60/mungbean.html [Accessed 1 March 2008].
50. Stift G, Pachner M, Lelley T (2003). Comparison of RAPD fragment separation in agarose and polyacrylamide gel by studying Cucurbita species. Cucurbit Genet. Coop. Rep. 26: 62-65.
51. Tar'an B, Zhang C, Warkentin T, Tullu A, Vandenberg A (2005). Genetic diversity among varieties and wild species accessions of pea (Pisum sativum L.) based on molecular markers, and morphological and physiological characters. Genome 48: 257-272.
52. Tosti N, Negri V (2002). Efficiency of three PCR-based markers in assessing genetic variation among cowpea (Vigna unguiculata subsp. unguiculata) landraces. Genome 45: 268-275.
53. Wang G, Mahalingam R, Knap HT (1998). (C-A) and (G-A) anchored simple sequence repeats (ASSRs) generated polymorphism in soybean, Glycine max (L.) Merr. Theor. Appl. Genet. 96: 1086-1096.
54. Wang L, Guan R, Zhangxiong L, Chang R, Qiu L (2006). Genetic diversity of Chinese cultivated soybean revealed by SSR markers. Crop Sci. 46: 1032-1038.
55. Wang XW, Kaga A, Tomooka N, Vaughan DA (2004). The development of SSR markers by a new method in plants and their application to gene flow studies in azuki bean [Vigna angularis (Willd.) Ohwi and Ohashi]. Theor. Appl. Genet. 109: 352-360.
56. Watanasit A, Ngampongsai S, Thanomsub W, Thanomsub S (2000). CN 72 A new mungbean cultivar. In: Proceedings of the National Mungbean Research Conference VIII held at Kasetsart University, Thailand, 18-20 January 2000, pp: 21-30 (in Thai, with English abstract).
57. Zietjiewicz E, Rafalski A, Labuda A (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183.