메뉴 건너뛰기




Volumn 11, Issue , 2010, Pages

GeneBrowser 2: An application to explore and identify common biological traits in a set of genes

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL CHARACTERISTIC; BIOLOGICAL INFORMATION; BIOLOGICAL TRAITS; COMPUTER ASSISTED; GENE EXPRESSION STUDIES; LABORATORY TECHNIQUES; RESULT ANALYSIS; TIME-CONSUMING TASKS;

EID: 77954675055     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-389     Document Type: Article
Times cited : (6)

References (35)
  • 1
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • 10.1101/gr.1910904, 419787, 15173114
    • Lee HK, et al. Coexpression analysis of human genes across many microarray data sets. Genome Res 2004, 14(6):1085-94. 10.1101/gr.1910904, 419787, 15173114.
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1085-1094
    • Lee, H.K.1
  • 2
    • 5044227742 scopus 로고    scopus 로고
    • The evolution of molecular biology into systems biology
    • Westerhoff H, Palsson B. The evolution of molecular biology into systems biology. Nat Biotech 2004, 22(10):1249-1252.
    • (2004) Nat Biotech , vol.22 , Issue.10 , pp. 1249-1252
    • Westerhoff, H.1    Palsson, B.2
  • 3
    • 84984934477 scopus 로고    scopus 로고
    • Expression profiling using cDNA microarrays
    • 10.1038/4434, 9915494
    • Duggan DJ, et al. Expression profiling using cDNA microarrays. Nature Genetics 1999, 21:10-14. 10.1038/4434, 9915494.
    • (1999) Nature Genetics , vol.21 , pp. 10-14
    • Duggan, D.J.1
  • 4
    • 58749086057 scopus 로고    scopus 로고
    • The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis
    • Blake JA, Harris MA. The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis. Curr Protoc Bioinformatics 2008, Chapter 7(Unit 7):2.
    • (2008) Curr Protoc Bioinformatics , pp. 2
    • Blake, J.A.1    Harris, M.A.2
  • 5
    • 0042121055 scopus 로고    scopus 로고
    • Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate
    • 10.1093/nar/gkg624, 169030, 12824416
    • Draghici S, et al. Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Res 2003, 31(13):3775-81. 10.1093/nar/gkg624, 169030, 12824416.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3775-3781
    • Draghici, S.1
  • 6
    • 0038175144 scopus 로고    scopus 로고
    • GoMiner: a resource for biological interpretation of genomic and proteomic data
    • 10.1186/gb-2003-4-4-r28, 154579, 12702209
    • Zeeberg BR, et al. GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol 2003, 4(4):R28. 10.1186/gb-2003-4-4-r28, 154579, 12702209.
    • (2003) Genome Biol , vol.4 , Issue.4
    • Zeeberg, B.R.1
  • 7
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: find statistically overrepresented Gene Ontologies within a group of genes
    • 10.1093/bioinformatics/bth088, 14962934
    • Beissbarth T, Speed TP. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 2004, 20(9):1464-5. 10.1093/bioinformatics/bth088, 14962934.
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 8
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: current tools, limitations, and open problems
    • 10.1093/bioinformatics/bti565, 2435250, 15994189
    • Khatri P, Draghici S. Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 2005, 21(18):3587-95. 10.1093/bioinformatics/bti565, 2435250, 15994189.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3587-3595
    • Khatri, P.1    Draghici, S.2
  • 9
    • 23144431919 scopus 로고    scopus 로고
    • PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways
    • 10.1093/nar/gki391, 1160152, 15980551
    • Mlecnik B, et al. PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways. Nucleic Acids Res 2005, (33 Web Server):W633-7. 10.1093/nar/gki391, 1160152, 15980551.
    • (2005) Nucleic Acids Res , Issue.33
    • Mlecnik, B.1
  • 11
    • 34247354150 scopus 로고    scopus 로고
    • From genes to functional classes in the study of biological systems
    • 10.1186/1471-2105-8-114, 1853114, 17407596
    • Al-Shahrour F, et al. From genes to functional classes in the study of biological systems. BMC Bioinformatics 2007, 8:114. 10.1186/1471-2105-8-114, 1853114, 17407596.
    • (2007) BMC Bioinformatics , vol.8 , pp. 114
    • Al-Shahrour, F.1
  • 12
    • 1542399989 scopus 로고    scopus 로고
    • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
    • 10.1093/bioinformatics/btg455, 14990455
    • Al-Shahrour F, Diaz-Uriarte R, Dopazo J. FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 2004, 20(4):578-80. 10.1093/bioinformatics/btg455, 14990455.
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 578-580
    • Al-Shahrour, F.1    Diaz-Uriarte, R.2    Dopazo, J.3
  • 13
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • 10.1038/nprot.2008.211, 19131956
    • Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4(1):44-57. 10.1038/nprot.2008.211, 19131956.
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 14
    • 13444272087 scopus 로고    scopus 로고
    • Entrez Gene: gene-centered information at NCBI
    • 539985, 15608257
    • Maglott D, et al. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 2005, (33 Database):D54-8. 539985, 15608257.
    • (2005) Nucleic Acids Res , Issue.33
    • Maglott, D.1
  • 15
    • 0031114483 scopus 로고    scopus 로고
    • GeneCards: integrating information about genes, proteins and diseases
    • 10.1016/S0168-9525(97)01103-7, 9097728
    • Rebhan M, et al. GeneCards: integrating information about genes, proteins and diseases. Trends Genet 1997, 13(4):163. 10.1016/S0168-9525(97)01103-7, 9097728.
    • (1997) Trends Genet , vol.13 , Issue.4 , pp. 163
    • Rebhan, M.1
  • 16
    • 58149116647 scopus 로고    scopus 로고
    • GeneBrowser: an approach for integration and functional classification of genomic data
    • Arrais J, et al. GeneBrowser: an approach for integration and functional classification of genomic data. Journal of Integrative Bioinformatics 2007, 4(3).
    • (2007) Journal of Integrative Bioinformatics , vol.4 , Issue.3
    • Arrais, J.1
  • 17
    • 33644873213 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt): an expanding universe of protein information
    • 10.1093/nar/gkj161, 1347523, 16381842
    • Wu CH, et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res 2006, (34 Database):D187-91. 10.1093/nar/gkj161, 1347523, 16381842.
    • (2006) Nucleic Acids Res , Issue.34
    • Wu, C.H.1
  • 18
    • 0032919364 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • 10.1093/nar/27.1.29, 148090, 9847135
    • Ogata H, et al. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 1999, 27(1):29-34. 10.1093/nar/27.1.29, 148090, 9847135.
    • (1999) Nucleic Acids Res , vol.27 , Issue.1 , pp. 29-34
    • Ogata, H.1
  • 19
    • 0034916009 scopus 로고    scopus 로고
    • PubMed: bridging the information gap
    • 81025, 11341144
    • McEntyre J, Lipman D. PubMed: bridging the information gap. Cmaj 2001, 164(9):1317-9. 81025, 11341144.
    • (2001) Cmaj , vol.164 , Issue.9 , pp. 1317-1319
    • McEntyre, J.1    Lipman, D.2
  • 21
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • 10.1038/75556, 10802651
    • Ashburner M, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25(1):25-9. 10.1038/75556, 10802651.
    • (2000) Nat Genet , vol.25 , Issue.1 , pp. 25-29
    • Ashburner, M.1
  • 22
    • 0037293075 scopus 로고    scopus 로고
    • Global functional profiling of gene expression
    • 10.1016/S0888-7543(02)00021-6, 12620386
    • Draghici S, et al. Global functional profiling of gene expression. Genomics 2003, 81(2):98-104. 10.1016/S0888-7543(02)00021-6, 12620386.
    • (2003) Genomics , vol.81 , Issue.2 , pp. 98-104
    • Draghici, S.1
  • 23
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini Y, Yekutieli D. The control of the false discovery rate in multiple testing under dependency. Annals of Statistics 2001, 29(4):1165-1188.
    • (2001) Annals of Statistics , vol.29 , Issue.4 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 24
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: gene expression data analysis comes of age
    • 10.1038/ng1033, 12454645
    • Slonim DK. From patterns to pathways: gene expression data analysis comes of age. Nature Genetics 2002, 32:502-508. 10.1038/ng1033, 12454645.
    • (2002) Nature Genetics , vol.32 , pp. 502-508
    • Slonim, D.K.1
  • 25
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • 10.1093/nar/28.1.27, 102409, 10592173
    • Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28(1):27-30. 10.1093/nar/28.1.27, 102409, 10592173.
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 26
    • 0037015858 scopus 로고    scopus 로고
    • Gene homology resources on the World Wide Web
    • Turchin A, Kohane IS. Gene homology resources on the World Wide Web. Physiological Genomics 2002, 11(3):165-77.
    • (2002) Physiological Genomics , vol.11 , Issue.3 , pp. 165-177
    • Turchin, A.1    Kohane, I.S.2
  • 27
    • 58149204055 scopus 로고    scopus 로고
    • ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression
    • 10.1093/nar/gkn889, 2686529, 19015125
    • Parkinson H, et al. ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Research 2009, 37:D868-D872. 10.1093/nar/gkn889, 2686529, 19015125.
    • (2009) Nucleic Acids Research , vol.37
    • Parkinson, H.1
  • 28
    • 75549085494 scopus 로고    scopus 로고
    • Gene expression atlas at the European bioinformatics institute
    • 10.1093/nar/gkp936, 2808905, 19906730
    • Kapushesky M, et al. Gene expression atlas at the European bioinformatics institute. Nucleic Acids Res 2010, (38 Database):D690-8. 10.1093/nar/gkp936, 2808905, 19906730.
    • (2010) Nucleic Acids Res , Issue.38
    • Kapushesky, M.1
  • 29
    • 84888274890 scopus 로고    scopus 로고
    • Medline fact sheets
    • Medline fact sheets. , http://www.nlm.nih.gov/pubs/factsheets/medline.html
  • 30
    • 84888281046 scopus 로고
    • Introduction to Modern Information-Retrieval - Salton,G, Mcgill,Mj
    • Jones KP. Introduction to Modern Information-Retrieval - Salton,G, Mcgill,Mj. Journal of Documentation 1984, 40(4):289-291.
    • (1984) Journal of Documentation , vol.40 , Issue.4 , pp. 289-291
    • Jones, K.P.1
  • 32
    • 32044453343 scopus 로고    scopus 로고
    • X chromosomal abnormalities in basal-like human breast cancer
    • 10.1016/j.ccr.2006.01.013, 16473279
    • Richardson AL, et al. X chromosomal abnormalities in basal-like human breast cancer. Cancer Cell 2006, 9(2):121-32. 10.1016/j.ccr.2006.01.013, 16473279.
    • (2006) Cancer Cell , vol.9 , Issue.2 , pp. 121-132
    • Richardson, A.L.1
  • 33
    • 38849110236 scopus 로고    scopus 로고
    • Calcium signalling and cancer cell growth
    • full_text, 18193646
    • Capiod T, et al. Calcium signalling and cancer cell growth. Subcell Biochem 2007, 45:405-27. full_text, 18193646.
    • (2007) Subcell Biochem , vol.45 , pp. 405-427
    • Capiod, T.1
  • 34
    • 77249117167 scopus 로고    scopus 로고
    • Modulation of ATP-induced calcium signaling by progesterone in T47D-Y breast cancer cells
    • 10.1016/j.mce.2010.01.004, 20079401
    • Lee KL, et al. Modulation of ATP-induced calcium signaling by progesterone in T47D-Y breast cancer cells. Mol Cell Endocrinol 2010, 319(1-2):109-15. 10.1016/j.mce.2010.01.004, 20079401.
    • (2010) Mol Cell Endocrinol , vol.319 , Issue.1-2 , pp. 109-115
    • Lee, K.L.1
  • 35
    • 71549120365 scopus 로고    scopus 로고
    • Serum calcium and breast cancer risk in a prospective cohort study
    • 10.1016/j.annepidem.2009.09.001, 20006279
    • Sprague BL, et al. Serum calcium and breast cancer risk in a prospective cohort study. Ann Epidemiol 2010, 20(1):82-5. 10.1016/j.annepidem.2009.09.001, 20006279.
    • (2010) Ann Epidemiol , vol.20 , Issue.1 , pp. 82-85
    • Sprague, B.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.