Proteomic analysis of wheat embryos with 2-DE and liquid-phase chromatography (ProteomeLab PF-2D) - A wider perspective of the proteome

Journal of Proteomics

Volumn 73, Issue 9, 2010, Pages 1707-1721

  Irar, Sami ^a   Brini, Faïçal ^b   Goday, Adela ^a   Masmoudi, Khaled ^b   Pagès, Montserrat ^a  

^a CSIC   (Spain)

^b CENTRE DE BIOTECHNOLOGIE DE SFAX   (Tunisia)

Author keywords

2 D Electrophoresis; Comparative proteomics; Drought and salt tolerance; ProteomeLab PF 2D; Wheat embryo proteins

Indexed keywords

HEAT SHOCK PROTEIN; PROTEOME; VEGETABLE PROTEIN;

ARTICLE; DESICCATION; DROUGHT TOLERANCE; ENZYME ACTIVITY; ENZYME METABOLISM; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PH; PRIORITY JOURNAL; PROTEOMICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SALT STRESS; SALT TOLERANCE; TWO DIMENSIONAL ELECTROPHORESIS; WESTERN BLOTTING; WHEAT GERM; CHEMISTRY; DROUGHT; GENE EXPRESSION PROFILING; METABOLISM; PLANT SEED; PROCEDURES; TWO DIMENSIONAL GEL ELECTROPHORESIS; WHEAT;

CHROMATOGRAPHY, LIQUID; DROUGHTS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION PROFILING; PLANT PROTEINS; PROTEOME; SEEDS; TRITICUM;

TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 77954656366     PISSN: 18743919     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jprot.2010.05.003     Document Type: Article

References (66)

1. Zhu J.K. Regulation of ion homeostasis under salt stress. Curr Opin Plant Biol 2003, 441-445.
2. Bray E.A. Plant responses to water deficit. Trends Plant Sci 1997, 2:48-54.
3. Kristofferson H.E., Flengsrud R. Separation and characterization of basic barley seed proteins. Electrophoresis 2000, 21:3693-3700.
4. Peltier J.B., Friso G., Kalume D.E., Roepstorff P., Nilsson F., Adamska I., et al. Proteomics of the chloroplast: systematic identification and targeting analysis of luminal and peripheral thylakoid proteins. Plant Cell 2000, 12:303-304.
5. Prime T.A., Sherrier D.J., Mahon P., Packman L.C., Dupree P. A proteomic analysis of organelles from Arabidopsis thaliana. Electrophoresis 2000, 21:3488-3499.
6. Skylas D.J., Mackintosh J.A., Cordwell S.J., Basseal D.J., Walsh B.J., Harry J., et al. Proteome approach to the characterisation of protein composition in the developing and mature wheat-grain endosperm. J Cereal Sci 2000, 32:169-188.
7. Gallardo K., Job C., Groot S.P., Puype M., Demol H., Vandekerckhove J., et al. Proteomic analysis of Arabidopsis seed germination and priming. Plant Physiol 2001, 126:835-848.
8. Haebel S., Kehr J. Matrix-assisted laser desorption/ionizatin time of flight mass spectrometry peptide mass fingerprints and post source decay: a tool for the identification and analysis of phloem proteins from Cucurbita maxima Duch. separated by two-dimensional polyacrylamide gel electrophoresis. Planta 2001, 213:586-593.
9. Kruft V., Eubel H., Jansch L., Werhahn W., Braun H.P. Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Plant Physiol 2001, 127:1694-1710.
10. Millar A.H., Sweetlove L.J., Giegé P., Leaver C.J. Analysis of the Arabidopsis mitochondrial proteome. Plant Physiol 2001, 127:1711-1727.
11. Porubleva L., Vander Velden K., Kothari S., Olivier D.J., Chitnis P.R. The proteome of maize leaves: use of gene sequences and expressed sequence tag data for identification of proteins with peptide mass fingerprints. Electrophoresis 2001, 22:1724-1738.
12. Rakwal R., Komatsu S. Role of jasmonate in the rice (Oryza sativa L.) self defense mechanism using proteome analysis. Electrophoresis 2000, 21:2492-2500.
13. Peck S.C., Nuhse T.S., Hess D., Iglesias A., Meins F., Boller T. Directed proteomics identifies a plant-specific protein rapidly phosphorylated in response to bacterial and fungal elicitors. Plant Cell 2001, 13:1467-1475.
14. Amiour N., Merlino M., Leroy P., Branlard G. Proteomic analysis of amphiphilic proteins of hexaploid wheat kernels. Proteomics 2002, 2:632-641.
15. Skylas D.J., van Dyk D., Wrigley C.W. Proteomics of wheat grain. J Cereal Sci 2005, 41:165-179.
16. Thiellement H., Bahrman N., Damerval C., Plomion C., Rossignol M., Santoni V., et al. Proteomics for genetic and physiological studies in plants. Electrophoresis 1999, 20:2013-2026.
17. Ingram J., Bartels D. The molecular basis of dehydration tolerance in plants. Annu Rev Plant Physiol Plant Mol Biol 1996, 47:377-403.
18. Olsen O.A., Linnestad C., Nichols S.E. Developmental biology of the cereal endosperm. Trends Plant Sci 1999, 4:253-257.
19. Young T.E., Gallie D.R., DeMason D.A. Ethylene-mediated programmed cell death during maize endosperm development of wild-type and shrunken2 genotypes. Plant Physiol 1997, 115:737-751.
20. Leprince O., Hendry G.A.F., McKersie B.D. The mechanisms of desiccation tolerance in developing seeds. Seed Sci Res 1993, 3:231-246.
21. Gomez J., Sanchez Martinez D., Stiefel V., Rigau J., Puigdomènech P., Pagès M. A gene induced by the plant hormone abscisic acid in response to water stress encodes a glycine-rich protein. Nature 1988, 334(6179):262-264.
22. Mundy J., Chua N.H. Abscisic acid and water-stress induce the expression of a novel rice gene. EMBO J 1988, 7:2279-2286.
23. Bonhert H.J., Jensen R.G. Strategies for engineering water stress tolerance in plants. Trends Biotechnol 1996, 14:89-97.
24. Wang W., Vinocur B., Soseyov O., Altman A. Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 2004, 9(5):244-252.
25. Noctor G., Foyer C.H. Ascorbate and glutathione: keeping active oxygen under control. Annu Rev Plant Physiol Plant Mol Biol 1998, 49:249-279.
26. Asada K. Ascorbate peroxidase: a hydrogen peroxidase scavenging system in plants. Physiol Plant 1992, 85:235-241.
27. Campalans A., Messeguer R., Goday A., Pagès M. Plant responses to drought, from ABA signal transduction events to the action of the induced proteins. Plant Physiol Biochem 1999, 37:1-14.
28. Cooper T.F., Rozen D.E., Lenski R.E. Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli. Proc Natl Acad Sci U S A 2003, 100:1072-1077.
29. Cánovas F.M., Dumas-Gaudot E., Recorbert G., Jorrín J., et al. Plant proteome analysis. Proteomics 2004, 4:285-298.
30. Rose J.K.C., Bashir S., Giovannoni J.J., Jahn M.M., Saravanan R.S. Tackling the plant proteome: practical approaches, hurdles and experimental tools. Plant J 2004, 39(5):715-733.
31. Patterson S.D. Proteomics: beginning to realize its promise?. Arthritis Rheum 2004, 50(12):3741-3744.
32. Agarwal G.K., Yonekura M., Iwahashi Y., Rakwal R. System, trends and perspectives of proteomics in dicot plants Part I: Technologies in proteome establishment. J Chromatogr B 2005, 815:109-123.
33. Lambert J.P., Tthier M., Smith J.C., Figeys D. Proteomics: from gel based to gel free. Anal Chem 2005, 77:3771-3787.
34. Soldi M., Sarto C., Valsecchi C., Magni F., Proserpio V., Ticozzi D., et al. Proteome profile of human urine with two-dimensional liquid phase fractionation. Proteomics 2005, 5(10):2641-2647.
35. Pirondini A., Visioli G., Malcevschi A., Marmiroli N. A 2-D liquid-phase chromatography for proteomic analysis in plant tissues. J Chromatogr B Analyt Technol Biomed Life Sci 2006, 833(1):91-100.
36. 18O-labeling mass spectrometry. J Proteome Res 2007, 6:2447-2459.
37. Peck S.C. Update on proteomics in Arabidopsis. Where do we go from here?. Plant Physiol 2005, 138(2):591-599.
38. Jorrin J.V., Maldonado A.M., Castillejo M.A. Plant proteome analysis: a 2006 update. Proteomics 2007, 7:2947-2962.
39. Brini F., Amara I., Feki K., Hanin M., Khoudi H., Masmoudi K. Physiological and molecular analysis of seedlings of two Tunisian durum wheat (Triticum turgidum L. subsp. Durum [Desf.]) varieties showing contrasting tolerance to salt stress. Acta Physiol Plant 2009, 31(1):145-154.
40. Medini M., Hamza S., Rebai A., Baum M. Analysis of genetic diversity in Tunisian durum wheat cultivars and related wild species by SSR and AFLP markers. Genet Resour Crop Evol 2005, 52:21-31.
41. Yang P., Li X., Wang X., Chen H., et al. Proteomics analysis of rice (Oryza sativa) seeds during germination. Proteomics 2007, 7:3358-3368.
42. Shevchenko A., Wilm M., Vorm O., Mann M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 1996, 68:850-858.
43. Goday A., Sanchez-Martinez D., Gomez J., Puigdomenech P., Pagès M. Gene expression in developing Zea maize embryos: regulation by abscisic acid of a highly phosohorylated 23-25 group of protein. Plant Physiol 1988, 88:564-569.
44. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685.
45. Rao M.V., Paliyath G., Ormrod D.P. Ultraviolet-B- and ozone induced biochemical changes in antioxidant enzymes of Arabidopsis thaliana. Plant Physiol 1996, 110:125-136.
46. Cuddeford D. Oats for animal feed. The oat crop: production and utilization 1995, 321-368. Chapman & Hall, London. R.W. Welch (Ed.).
47. Shewry P.R., Halford N. Cereal seed storage proteins: structures, properties and role in grain utilization. J Exp Bot 2006, 53(370):947-958.
48. Mak Y., Skylas D.J., Willows R., Connolly A., Cordwell S.J., Wrigley C.W., et al. A proteomic approach to the identification and characterisation of protein composition in wheat germ. Funct Integr Genomics 2006, 6:322-337.
49. Finnie C., Melchior S., Roepstorff P., Sevensson B. Proteome analysis of grain filling and seed maturation in barley. Plant Physiol 2002, 129(3):1308-1319.
50. Leung J., Giraudat J. Abscisic acid signal transduction. Annu Rev Plant Physiol Plant Mol Biol 1998, 49:199-222.
51. Frey A., Godin B., Bonnet M., Sotta B., Marion-Poll A. Maternal synthesis of abscissic acid controls seed development and yield in Nicotiana plumbaginifolia. Planta 2004, 218:958-964.
52. Jacobsen J.V., Pearce D.W., Poole A.T., Pharis R.P., Mander L.N. Abscisic acid, phaseic acid and gibberellin contents associated with dormancy and germination in barley. Physiol Plant 2002, 115(3):428-441.
53. Kazuaka T., Oeda K. Purification and characterisation of COR85-oligomeric complex from cold-acclimated spinach. Plant Cell Physiol 1994, 35:601-611.
54. Figueras M., Pujal J., Saleh A., Savé R., Pagès M., Goday A. Maize Rab17 over-expression in Arabidopsis plants promotes osmotic stress tolerance. Ann Appl Biol 2004, 144:251-257.
55. Bartels D., Sunkar R. Drought and salt tolerance in plants. Crit Rev Plant Sci 2005, 24:23.
56. Halliwell B., Gutteridge J.M.C. Free Radicals in Biology and Medicine 1985, Clarendon Press, Oxford.
57. Kliebenstein D., Monde R.A., Last R.L. Superoxide dismutase in Arabidopsis: an electic enzyme family with disparate regulation and protein regulation. Plant Physiol 1998, 118:637-650.
58. Lee P.Y., Kim S.H., Bang G.W., Lee H.S., Kwak S.S., Kwon S.Y. Enhanced tolerance to oxidative stress in transgenic tobacco plants expressing three antioxidant enzymes in chloroplasts. Plant Cell Rep 2007, 26:591-598.
59. Kern D., Kern G., Scherer G., Fischer G., Drakenberg T. Kinetic analysis of cyclophilin-catalyzed prolyl cis/trans isomerization by dynamic NMR spectroscopy. Biochemistry 1995, 34(41):13594-13602.
60. Matouschek A., Rospert S., Schmid K., Glick B.S., Schatz G. Cyclophilin catalyzes protein folding in yeast mitochondria. Proc Natl Acad Sci U S A 1995, 92(14):6319-6323.
61. Foor F., Parent S.A., Morin N., Dahl A.M., Ramadan N., Chrebet G., et al. Calcineurin mediates inhibition by FK506 and cyclosporin of recovery from alpha-factor arrest in yeast. Nature 1992, 360:682-684.
62. + channels in guard cells. Proc Natl Acad Sci U S A 1993, 90:2202-2206.
63. Jain M., Nijhawan A., Arora R., Agarwal P., Ray S., Sharma P., et al. F-box proteins in rice: genome wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol Prev 2007, 10.1104/pp.106.091900.
64. Greenbaum D., Colangelo C., Williams K., Gerstein M. Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 2003, 4(9):117.
65. Pla M., Vilardell J., Guiltinan M.J., Marcotte W.R., Niogret M.R., Quatrano R.S., et al. The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Plant Mol Biol 1993, 21:259-266.
66. Niogret M.F., Culianez-Macia F.A., Godoy A., Mar Alba M., Pagès M. Expression and cellular localization of rab28 mRNA and Rab28 protein during maize embryogenesis. Plant J 1996, 9(4):549-557.