-
2
-
-
0003590311
-
-
NATO Science Series, Amsterdam, NATO Advanced Study Institute, IOS Press
-
M.C. Bellissent-Funel, Hydration Processes in Biology. Theoretical and Experimental Approaches, NATO Science Series, Amsterdam, NATO Advanced Study Institute, IOS Press, 1999.
-
(1999)
Hydration Processes in Biology. Theoretical and Experimental Approaches
-
-
Bellissent-Funel, M.C.1
-
3
-
-
0003400560
-
-
Birkhäuser Verlag, Basel, second edition, section II.3
-
A.N. Borodin and P. Salminen, Handbook of Brownian Motion-Facts and Formulae, Probability and its Applications, Birkhäuser Verlag, Basel, second edition, section II.3, 672, 2002.
-
(2002)
Handbook of Brownian Motion-Facts and Formulae, Probability and its Applications
, pp. 672
-
-
Borodin, A.N.1
Salminen, P.2
-
4
-
-
0031556719
-
Orientational disorder and entropy of water in protein cavities
-
V.P. Denisov, K. Venu, J. Peters, H.D. Hörlein and B. Halle, Orientational disorder and entropy of water in protein cavities, J. Phys. Chem. B, 101, 9380-9389, 1997.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 9380-9389
-
-
Denisov, V.P.1
Venu, K.2
Peters, J.3
Hörlein, H.D.4
Halle, B.5
-
5
-
-
37049088561
-
The concept of Brownian motion in modern statistical mechanics
-
London, The Faraday Division of the Royal Society of Chemistry, The Royal Society of Chemistry
-
J.M. Deutch and I. Oppenheim, The concept of Brownian motion in modern statistical mechanics, Brownian Motion, Faraday Discuss. Chem. Soc., London, The Faraday Division of the Royal Society of Chemistry, The Royal Society of Chemistry, 83, 1-20, 1987.
-
(1987)
Brownian Motion, Faraday Discuss. Chem. Soc.
, vol.83
, pp. 1-20
-
-
Deutch, J.M.1
Oppenheim, I.2
-
6
-
-
55549088583
-
Regular gaits and optimal velocities for motor proteins
-
R.E.L. DeVille and E. Vanden-Eijnden, Regular gaits and optimal velocities for motor proteins, Biophysical Journal, 95, 2681-2691, 2008.
-
(2008)
Biophysical Journal
, vol.95
, pp. 2681-2691
-
-
DeVille, R.E.L.1
Vanden-Eijnden, E.2
-
8
-
-
28844472017
-
Acceleration of diffusion in randomly switching potential with supersymmetry
-
A.A. Dubkov and B. Spagnolo, Acceleration of diffusion in randomly switching potential with supersymmetry, Phys. Rev. E, 72, 041104, 2005.
-
(2005)
Phys. Rev. E
, vol.72
, pp. 041104
-
-
Dubkov, A.A.1
Spagnolo, B.2
-
9
-
-
0034277971
-
A macroscopic description of biomolecular transport
-
T.C. Elston, A macroscopic description of biomolecular transport, J. Math. Biology, 41, 189-206, 2000.
-
(2000)
J. Math. Biology
, vol.41
, pp. 189-206
-
-
Elston, T.C.1
-
10
-
-
0033689657
-
The role of protein flexibility in molecular motor function: coupled diffusion in a tilted periodic potential
-
(electronic)
-
T.C. Elston and C.S. Peskin, The role of protein flexibility in molecular motor function: coupled diffusion in a tilted periodic potential, SIAM J. Appl. Math., 60, 842-867, (electronic) 2000.
-
(2000)
SIAM J. Appl. Math.
, vol.60
, pp. 842-867
-
-
Elston, T.C.1
Peskin, C.S.2
-
11
-
-
0034912149
-
Protein flexibility and the correlation ratchet
-
(electronic)
-
T.C. Elston, D. You and C.S. Peskin, Protein flexibility and the correlation ratchet, SIAM J. Appl. Math., 61, 776-791, (electronic) 2000.
-
(2000)
SIAM J. Appl. Math.
, vol.61
, pp. 776-791
-
-
Elston, T.C.1
You, D.2
Peskin, C.S.3
-
12
-
-
0004207135
-
-
Springer-Verlag, New York
-
C.P. Fall, E.S. Marland, J.M. Wagner and J.J. Tyson, Computational Cell Biology, Interdisciplinary Applied Mathematics, Springer-Verlag, New York, 20, 2002.
-
(2002)
Computational Cell Biology, Interdisciplinary Applied Mathematics
, pp. 20
-
-
Fall, C.P.1
Marland, E.S.2
Wagner, J.M.3
Tyson, J.J.4
-
15
-
-
0004300111
-
-
second edition, Springer Series in Synergetics, Springer-Verlag, Berlin
-
C.W. Gardiner, Handbook of Stochastic Methods, second edition, Springer Series in Synergetics, Springer-Verlag, Berlin, 13, 1985.
-
(1985)
Handbook of Stochastic Methods
, pp. 13
-
-
Gardiner, C.W.1
-
16
-
-
0032215287
-
Simulating water and the molecules of life
-
M. Gerstein and M. Levitt, Simulating water and the molecules of life, Scientific American, 100-105, 1998.
-
(1998)
Scientific American
, pp. 100-105
-
-
Gerstein, M.1
Levitt, M.2
-
17
-
-
0000796056
-
Water in biological systems: the NMR picture
-
B. Halle, Water in biological systems: the NMR picture, Bellissent-Funel [2], 233-249.
-
Bellissent-Funel [2]
, pp. 233-249
-
-
Halle, B.1
-
18
-
-
64349105027
-
Artificial Brownian motors: controlling transport on the nanoscale
-
P. Hänggi and F. Marchesoni, Artificial Brownian motors: controlling transport on the nanoscale, Rev. Mod. Phys., 81, 387-442, 2009.
-
(2009)
Rev. Mod. Phys.
, vol.81
, pp. 387-442
-
-
Hänggi, P.1
Marchesoni, F.2
-
19
-
-
0031536149
-
Modeling molecular motors
-
F. Jülicher, A. Ajdari and J. Prost, Modeling molecular motors, Rev. Mod. Phys., 69, 1269-1281, 1997.
-
(1997)
Rev. Mod. Phys.
, vol.69
, pp. 1269-1281
-
-
Jülicher, F.1
Ajdari, A.2
Prost, J.3
-
20
-
-
1642526386
-
Methane partitioning and transport in hydrated carbon nanotubes
-
A. Kalra, G. Hummer and S. Garde, Methane partitioning and transport in hydrated carbon nanotubes, J. Phys. Chem. B, 108, 544-549, 2004.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 544-549
-
-
Kalra, A.1
Hummer, G.2
Garde, S.3
-
23
-
-
0036002848
-
Diffusion-mediated transport and the flashing ratchet
-
D. Kinderlehrer and M. Kowalczyk, Diffusion-mediated transport and the flashing ratchet, Arch. Ration. Mech. Anal., 161, 149-179, 2002.
-
(2002)
Arch. Ration. Mech. Anal.
, vol.161
, pp. 149-179
-
-
Kinderlehrer, D.1
Kowalczyk, M.2
-
24
-
-
0003335723
-
Numerical Solution of Stochastic Differential Equations
-
Springer-Verlag, Berlin
-
P.E. Kloeden and E. Platen, Numerical Solution of Stochastic Differential Equations, Applications of Mathematics: Stochastic Modelling and Applied Probability, Springer-Verlag, Berlin, 23, 1992.
-
(1992)
Applications of Mathematics: Stochastic Modelling and Applied Probability
, pp. 23
-
-
Kloeden, P.E.1
Platen, E.2
-
25
-
-
0037342115
-
A simple kinetic model describes the processivity of Myosin-V
-
A.B. Kolomeisky and M.E. Fisher, A simple kinetic model describes the processivity of Myosin-V, Biophys. J., 84, 1642-1650, 2003.
-
(2003)
Biophys. J.
, vol.84
, pp. 1642-1650
-
-
Kolomeisky, A.B.1
Fisher, M.E.2
-
27
-
-
0036871202
-
Numerical approach to Fokker-Planck equations for Brownian motors
-
M. Kostur, Numerical approach to Fokker-Planck equations for Brownian motors, International J. Modern Physics C, 13, 1157-1176, 2002.
-
(2002)
International J. Modern Physics C
, vol.13
, pp. 1157-1176
-
-
Kostur, M.1
-
28
-
-
77954651289
-
Effective transport properties for flashing ratchets using homogenization theory
-
Special Issue: Sixth International Congress on Industrial Applied Mathematics (ICIAM07) and GAMM Annual Meeting, Zürich 2007
-
J.C. Latorre, P.R. Kramer and G.A. Pavliotis, Effective transport properties for flashing ratchets using homogenization theory, PAMM, 7, 1080501-1080502, 2008. Special Issue: Sixth International Congress on Industrial Applied Mathematics (ICIAM07) and GAMM Annual Meeting, Zürich 2007.
-
(2008)
PAMM
, vol.7
, pp. 1080501-1080502
-
-
Latorre, J.C.1
Kramer, P.R.2
Pavliotis, G.A.3
-
29
-
-
36549099780
-
The structure of liquid water at an extended hydrophobic surface
-
C.Y. Lee, J.A. McCammon and P.J. Rossky, The structure of liquid water at an extended hydrophobic surface, J. Chem. Phys., 80, 4448-4455, 1984.
-
(1984)
J. Chem. Phys.
, vol.80
, pp. 4448-4455
-
-
Lee, C.Y.1
McCammon, J.A.2
Rossky, P.J.3
-
30
-
-
34547229706
-
Self-induced stochastic resonance for Brownian ratchets under load
-
R.E. Lee DeVille and E. Vanden-Eijnden, Self-induced stochastic resonance for Brownian ratchets under load, Commun. Math. Sci., 5, 431-446, 2007.
-
(2007)
Commun. Math. Sci.
, vol.5
, pp. 431-446
-
-
Lee DeVille, R.E.1
Vanden-Eijnden, E.2
-
31
-
-
0038238581
-
Activated escape over oscillating barriers: the case of many dimensions
-
J. Lehmann, P. Reimann and P. Hänggi, Activated escape over oscillating barriers: the case of many dimensions, Phys. Stat. Sol., 237, 53-71, 2003.
-
(2003)
Phys. Stat. Sol.
, vol.237
, pp. 53-71
-
-
Lehmann, J.1
Reimann, P.2
Hänggi, P.3
-
32
-
-
0001792028
-
Optimal diffusive transport in a tilted periodic potential
-
B. Lindner, M. Kostur and L. Schimansky-Geier, Optimal diffusive transport in a tilted periodic potential, Fluctuation and Noise Letters, 1, R25-R39, 2001.
-
(2001)
Fluctuation and Noise Letters
, vol.1
-
-
Lindner, B.1
Kostur, M.2
Schimansky-Geier, L.3
-
33
-
-
77954638703
-
Molecular dynamics simulation of proteins in aqueous environment
-
V. Lounnas, Molecular dynamics simulation of proteins in aqueous environment, in Bellissent-Funel [2], 261-290.
-
Bellissent-Funel [2]
, pp. 261-290
-
-
Lounnas, V.1
-
34
-
-
0028218493
-
A global model of the protein-solvent interface
-
V. Lounnas, B.M. Pettitt and J. George N. Phillips, A global model of the protein-solvent interface, Biophys. J., 66, 601-614, 1994.
-
(1994)
Biophys. J.
, vol.66
, pp. 601-614
-
-
Lounnas, V.1
Pettitt, B.M.2
George, J.3
Phillips, N.4
-
35
-
-
0038065268
-
A Markov model for kinesin
-
C. Maes and M.H. van Wieren, A Markov model for kinesin, J. Stat. Phys., 112, 329-355, 2003.
-
(2003)
J. Stat. Phys.
, vol.112
, pp. 329-355
-
-
Maes, C.1
van Wieren, M.H.2
-
36
-
-
0033636839
-
Residence times of water molecules in the hydration sites of myoglobin
-
V.A. Makarov, Residence times of water molecules in the hydration sites of myoglobin, Biophys. J., 79, 2966-2974, 2000.
-
(2000)
Biophys. J.
, vol.79
, pp. 2966-2974
-
-
Makarov, V.A.1
-
37
-
-
0031807764
-
Diffusion of solvent around biomolecular solutes: a molecular dynamics simulation study
-
V.A. Makarov, M. Feig, B.K. Andrews and B.M. Pettitt, Diffusion of solvent around biomolecular solutes: a molecular dynamics simulation study, Biophys. J., 75, 150-158, 1998.
-
(1998)
Biophys. J.
, vol.75
, pp. 150-158
-
-
Makarov, V.A.1
Feig, M.2
Andrews, B.K.3
Pettitt, B.M.4
-
38
-
-
0036534542
-
Protein-water interactions in a dynamic world
-
C. Mattos, Protein-water interactions in a dynamic world, TRENDS in Biochemical Sciences, 27, 203-208, 2002.
-
(2002)
TRENDS in Biochemical Sciences
, vol.27
, pp. 203-208
-
-
Mattos, C.1
-
39
-
-
0003527976
-
-
University Science Books, Herndon, VA, second edition
-
D.A. McQuarrie, Statistical Mechanics, University Science Books, Herndon, VA, second edition, 2000.
-
(2000)
Statistical Mechanics
-
-
McQuarrie, D.A.1
-
40
-
-
77954632818
-
-
Fall et al. [12], chapter 12
-
A. Mogilner, T.C. Elston, H. Wang and G. Oster, Molecular motors: theory, in Fall et al. [12], chapter 12, 68.
-
Molecular motors: theory
, pp. 68
-
-
Mogilner, A.1
Elston, T.C.2
Wang, H.3
Oster, G.4
-
41
-
-
41149162149
-
Model for hand-over-hand motion of molecular motors
-
J. Munárriz, J.J. Mazo and F. Falo, Model for hand-over-hand motion of molecular motors, Phys. Rev. E, 77, 031915, 2008.
-
(2008)
Phys. Rev. E
, vol.77
, pp. 031915
-
-
Munárriz, J.1
Mazo, J.J.2
Falo, F.3
-
43
-
-
0036681040
-
Energetics of Brownian motors: a review
-
J.M.R. Parrondo and B.J. de Cisneros, Energetics of Brownian motors: a review, Appl. Phys. A, 75, 179-191, 2002.
-
(2002)
Appl. Phys. A
, vol.75
, pp. 179-191
-
-
Parrondo, J.M.R.1
de Cisneros, B.J.2
-
45
-
-
24044476909
-
A multiscale approach to Brownian motors
-
G.A. Pavliotis, A multiscale approach to Brownian motors, Phys. Lett. A, 344, 331-345, 2005.
-
(2005)
Phys. Lett. A
, vol.344
, pp. 331-345
-
-
Pavliotis, G.A.1
-
46
-
-
77954634140
-
Parameter estimation for multiscale diffusions: An overview
-
LaManga, Sept. 19, to appear
-
G.A. Pavliotis, Y. Pokern and A.M. Stuart, Parameter estimation for multiscale diffusions: An overview, Proceedings of SemStat2007, LaManga, Sept. 19, to appear, 2009.
-
(2009)
Proceedings of SemStat2007
-
-
Pavliotis, G.A.1
Pokern, Y.2
Stuart, A.M.3
-
47
-
-
34247359516
-
Parameter estimation for multiscale diffusions
-
G.A. Pavliotis and A.M. Stuart, Parameter estimation for multiscale diffusions, J. Stat. Phys., 127, 741-781, 2007.
-
(2007)
J. Stat. Phys.
, vol.127
, pp. 741-781
-
-
Pavliotis, G.A.1
Stuart, A.M.2
-
48
-
-
0034310272
-
The mathematical theory of molecular motor movement and chemomechanical energy transduction
-
H. Qian, The mathematical theory of molecular motor movement and chemomechanical energy transduction, J. Math. Chem., 27, 219-234, 2000.
-
(2000)
J. Math. Chem.
, vol.27
, pp. 219-234
-
-
Qian, H.1
-
49
-
-
0036179557
-
Brownian motors: noisy transport far from equilibrium
-
P. Reimann, Brownian motors: noisy transport far from equilibrium, Phys. Rep., 361, 57, 2002.
-
(2002)
Phys. Rep.
, vol.361
, pp. 57
-
-
Reimann, P.1
-
50
-
-
0036681042
-
Introduction to the physics of Brownian motors
-
P. Reimann and P. Hänggi, Introduction to the physics of Brownian motors, Appl. Phys. A, 75, 169-178, 2002.
-
(2002)
Appl. Phys. A
, vol.75
, pp. 169-178
-
-
Reimann, P.1
Hänggi, P.2
-
51
-
-
0001030002
-
Water dynamical anomalies evidenced by molecular-dynamics simulations at the solvent-protein interface
-
C. Rocchi, A.R. Bizarri and S. Cannistraro, Water dynamical anomalies evidenced by molecular-dynamics simulations at the solvent-protein interface, Phys. Rev. E, 57, 3315-3325,1998.
-
(1998)
Phys. Rev. E
, vol.57
, pp. 3315-3325
-
-
Rocchi, C.1
Bizarri, A.R.2
Rocchi, S.3
-
52
-
-
0031568141
-
Water residence times around copper plastocyanin: a molecular dynamics simulation approach
-
C. Rocchi, A.R. Bizzarri and S. Cannistraro, Water residence times around copper plastocyanin: a molecular dynamics simulation approach, J. Chem. Phys., 214, 261-276, 1997.
-
(1997)
J. Chem. Phys.
, vol.214
, pp. 261-276
-
-
Rocchi, C.1
Bizzarri, A.R.2
Cannistraro, S.3
-
53
-
-
33746132537
-
An elastically tethered viscous load imposes a regular gait on the motion of myosin-V. Simulation of the effect of transient force relaxation on a stochastic process
-
M.J. Schilstra and S.R. Martin, An elastically tethered viscous load imposes a regular gait on the motion of myosin-V. Simulation of the effect of transient force relaxation on a stochastic process, Journal of The Royal Society Interface, 3, 153-165, 2006.
-
(2006)
Journal of The Royal Society Interface
, vol.3
, pp. 153-165
-
-
Schilstra, M.J.1
Martin, S.R.2
-
54
-
-
85097992027
-
-
Springer-Verlag, Berlin
-
T. Schlick, Molecular Modeling and Simulation: An Interdisciplinary Guide, Interdisciplinary Applied Mathematics, Springer-Verlag, Berlin, 21, 2002.
-
(2002)
Molecular Modeling and Simulation: An Interdisciplinary Guide, Interdisciplinary Applied Mathematics
, pp. 21
-
-
Schlick, T.1
|