Mapping flexibility and the assembly switch of cell division protein FtsZ by computational and mutational approaches

Journal of Biological Chemistry

Volumn 285, Issue 29, 2010, Pages 22554-22565

  Martín Galiano, Antonio J ^a   Buey, Rubén M ^b   Cabezas, Marta ^a,c   Andreu, José M ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

^b PAUL SCHERRER INSTITUTE   (Switzerland)

^c INIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

C-TERMINAL DOMAINS; CELL DIVISIONS; ESSENTIAL DYNAMICS; FUNCTIONAL MOTIONS; MOLECULAR SWITCHES; MUTANT PHENOTYPE; PROKARYOTIC CELLS; PUTATIVE BINDING SITES; SEQUENCE CONSERVATION; STRUCTURAL COMPARISON;

BINDING ENERGY; PROTEINS;

CELL PROLIFERATION;

FTSZ PROTEIN; GUANOSINE TRIPHOSPHATASE;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; GENE ACTIVATION; GENE INACTIVATION; GENE MAPPING; GENE MUTATION; GENE SWITCHING; GENETIC CONSERVATION; MATHEMATICAL COMPUTING; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN FUNCTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CELL DIVISION; CYTOSKELETAL PROTEINS; DNA MUTATIONAL ANALYSIS; EVOLUTION, MOLECULAR; LIGHT; MODELS, MOLECULAR; MUTANT PROTEINS; MUTATION; PLIABILITY; PROTEIN STRUCTURE, SECONDARY; SCATTERING, RADIATION; SEQUENCE ANALYSIS, PROTEIN;

PROKARYOTA;

EID: 77954588474     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.117127     Document Type: Article

References (66)

1. Osawa, M., Anderson, D. E., and Erickson, H. P. (2008) Science 320, 792-794
2. Adams, D. W., and Errington, J. (2009) Nat. Rev. Microbiol. 7, 642-653
3. Jordan, M. A., and Wilson, L. (2004) Nat. Rev. Cancer 4, 253-265
4. Vollmer, W. (2006) Appl. Microbiol. Biotechnol. 73, 37-47
5. Lock, R. L., and Harry, E. J. (2008) Nat. Rev. Drug Discov. 7, 324-338
6. Kapoor, S., and Panda, D. (2009) Expert Opin. Ther. Targets 13, 1037-1051
7. Läppchen, T., Pinas, V. A., Hartog, A. F., Koomen, G. J., Schaffner-Barbero, C., Andreu, J. M., Trambaiolo, D., Löwe, J., Juhem, A., Popov, A. V., and den Blaauwen, T. (2008) Chem. Biol. 15, 189-199
8. Haydon, D. J., Stokes, N. R., Ure, R., Galbraith, G., Bennett, J. M., Brown, D. R., Baker, P. J., Barynin, V. V., Rice, D. W., Sedelnikova, S. E., Heal, J. R., Sheridan, J. M., Aiwale, S. T., Chauhan, P. K., Srivastava, A., Taneja, A., Collins, I., Errington, J., and Czaplewski, L. G. (2008) Science 321, 1673-1675
9. Andreu, J. M., Schaffner-Barbero, C., Huecas, S., Alonso, D., Lopez-Rodriguez, M. L., Ruiz-Avila, L. B., Núñez-Ramírez, R., Llorca, O., and Martín- Galiano, A. J. (2010) J. Biol. Chem. 285, 14239-14246
10. Löwe, J., and Amos, L. A. (1999) EMBO J. 18, 2364-2371
11. Oliva, M. A., Huecas, S., Palacios, J. M., Martín-Benito, J., Valpuesta, J. M., and Andreu, J. M. (2003) J. Biol. Chem. 278, 33562-33570
12. Lu, C., Reedy, M., and Erickson, H. P. (2000) J. Bacteriol. 182, 164-170
13. Huecas, S., and Andreu, J. M. (2003) J. Biol. Chem. 278, 46146-46154
14. Huecas, S., and Andreu, J. M. (2004) FEBS Lett. 569, 43-48
15. Huecas, S., Llorca, O., Boskovic, J., Martín-Benito, J., Valpuesta, J. M., and Andreu, J. M. (2008) Biophys. J. 94, 1796-1806
16. Dajkovic, A., Mukherjee, A., and Lutkenhaus, J. (2008) J. Bacteriol. 190, 2513-2526
17. Miraldi, E. R., Thomas, P. J., and Romberg, L. (2008) Biophys. J. 95, 2470-2486
18. Lan, G., Dajkovic, A., Wirtz, D., and Sun, S. X. (2008) Biophys. J. 95, 4045-4056
19. Oliva, M. A., Cordell, S. C., and Löwe, J. (2004) Nat. Struct. Mol. Biol. 11, 1243-1250
20. Erickson, H. P. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 9238-9243
21. Löwe, J., and Amos, L. A. (1998) Nature 391, 203-206
22. Erickson, H. P. (1998) Trends Cell Biol. 8, 133-137
23. Nogales, E., Downing, K. H., Amos, L. A., and Löwe, J. (1998) Nat. Struct. Biol. 5, 451-458
24. Scheffers, D. J., de Wit, J. G., den Blaauwen, T., and Driessen, A. J. (2001) FEBS Lett. 494, 34-37
25. Coleman, D. E., Berghuis, A. M., Lee, E., Linder, M. E., Gilman, A. G., and Sprang, S. R. (1994) Science 265, 1405-1412
26. Mixon, M. B., Lee, E., Coleman, D. E., Berghuis, A. M., Gilman, A. G., and Sprang, S. R. (1995) Science 270, 954-960
27. Ravelli, R. B., Gigant, B., Curmi, P. A., Jourdain, I., Lachkar, S., Sobel, A., and Knossow, M. (2004) Nature 428, 198-202
28. Dorléans, A., Gigant, B., Ravelli, R. B., Mailliet, P., Mikol, V., and Knossow, M. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 13775-13779
29. Dimitrov, A., Quesnoit, M., Moutel, S., Cantaloube, I., Poüs, C., and Perez, F. (2008) Science 322, 1353-1356
30. Nogales, E., and Wang, H. W. (2006) Curr. Opin. Struct. Biol. 16, 221-229
31. Buey, R. M., Díaz, J. F., and Andreu, J. M. (2006) Biochemistry 45, 5933-5938
32. Rice, L. M., Montabana, E. A., and Agard, D. A. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 5378-5383
33. Gebremichael, Y., Chu, J. W., and Voth, G. A. (2008) Biophys. J. 95, 2487-2499
34. Bennett, M. J., Chik, J. K., Slysz, G. W., Luchko, T., Tuszynski, J., Sackett, D. L., and Schriemer, D. C. (2009) Biochemistry 48, 4858-4870
35. Oliva, M. A., Trambaiolo, D., and Löwe, J. (2007) J. Mol. Biol. 373, 1229-1242
36. Díaz, J. F., Kralicek, A., Mingorance, J., Palacios, J. M., Vicente, M., and Andreu, J. M. (2001) J. Biol. Chem. 276, 17307-17315
37. Díaz-Espinoza, R., Garcés, A. P., Arbildua, J. J., Montecinos, F., Brunet, J. E., Lagos, R., and Monasterio, O. (2007) Protein Sci. 16, 1543-1556
38. Haft, D. H., Selengut, J. D., and White, O. (2003) Nucleic Acids Res. 31, 371-373
39. Eddy, S. R. (1998) Bioinformatics 14, 755-763
40. Li, W., and Godzik, A. (2006) Bioinformatics 22, 1658-1659
41. Edgar, R. C. (2004) Nucleic Acids Res. 32, 1792-1797
42. Wang, K., and Samudrala, R. (2006) BMC Bioinformatics 7, 385
43. Lockless, S. W., and Ranganathan, R. (1999) Science 286, 295-299
44. Van Der Spoel, D., Lindahl, E., Hess, B., Groenhof, G., Mark, A. E., and Berendsen, H. J. (2005) J. Comput. Chem. 26, 1701-1718
45. van Aalten, D. M., Amadei, A., Linssen, A. B., Eijsink, V. G., Vriend, G., and Berendsen, H. J. (1995) Proteins 22, 45-54
46. Buey, R. M., Monterroso, B., Menéndez, M., Diakun, G., Chacón, P., Hermoso, J. A., and Díaz, J. F. (2007) J. Mol. Biol. 365, 411-424
47. de Groot, B. L., van Aalten, D. M., Scheek, R. M., Amadei, A., Vriend, G., and Berendsen, H. J. (1997) Proteins 29, 240-251
48. Amadei, A., Linssen, A. B., and Berendsen, H. J. (1993) Proteins 17, 412-425
49. Hayward, S., and Berendsen, H. J. (1998) Proteins 30, 144-154
50. Vaughan, S., Wickstead, B., Gull, K., and Addinall, S. G. (2004) J. Mol. Evol. 58, 19-29
51. Andreu, J. M., Oliva, M. A., and Monasterio, O. (2002) J. Biol. Chem. 277, 43262-43270
52. Kodama, T., Fukui, K., and Kometani, K. (1986) J. Biochem. 99, 1465-1472
53. Göbel, U., Sander, C., Schneider, R., and Valencia, A. (1994) Proteins 18, 309-317
54. Gromiha, M. M., and Selvaraj, S. (2004) Prog. Biophys. Mol. Biol. 86, 235-277
55. Flores, S. C., Lu, L. J., Yang, J., Carriero, N., and Gerstein, M. B. (2007) BMC Bioinformatics 8, 167
56. Addinall, S. G., Small, E., Whitaker, D., Sturrock, S., Donachie, W. D., and Khattar, M. M. (2005) J. Bacteriol. 187, 358-365
57. Dai, K., Mukherjee, A., Xu, Y., and Lutkenhaus, J. (1994) J. Bacteriol. 176, 130-136
58. Lu, C., Stricker, J., and Erickson, H. P. (2001) BMC Microbiol. 1, 7
59. Redick, S. D., Stricker, J., Briscoe, G., and Erickson, H. P. (2005) J. Bacteriol. 187, 2727-2736
60. Hatley, M. E., Lockless, S. W., Gibson, S. K., Gilman, A. G., and Ranganathan, R. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 14445-14450
61. Monahan, L. G., Robinson, A., and Harry, E. J. (2009) Mol. Microbiol. 74, 1004-1017
62. Chen, Y., Anderson, D. E., Rajagopalan, M., and Erickson, H. P. (2007) J. Biol. Chem. 282, 27736-27743
63. Gupta, P., Srinivasan, R., Rajeswari, H., Indi, S., and Ajitkumar, P. (2008) Biochem. Biophys. Res. Commun. 368, 445-452
64. Feucht, A., and Errington, J. (2005) Microbiology 151, 2053-2064
65. Díaz, J. F., Menéndez, M., and Andreu, J. M. (1993) Biochemistry 32, 10067-10077
66. Elie-Caille, C., Severin, F., Helenius, J., Howard, J., Muller, D. J., and Hyman, A. A. (2007) Curr. Biol. 17, 1765-1770