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Volumn 78, Issue 1, 2010, Pages 47-56

Secondary and tertiary structure modeling reveals effects of novel mutations in polycystic liver disease genes PRKCSH and SEC63

Author keywords

Homology modeling; Polycystic liver disease; PRKCSH; SEC63; Structural effects

Indexed keywords

ADULT; ARTICLE; CAPILLARY ELECTROPHORESIS; FEMALE; GENE; GENE DELETION; GENE INSERTION; GENE MUTATION; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC SCREENING; HUMAN; LIVER POLYCYSTIC DISEASE; MAJOR CLINICAL STUDY; MISSENSE MUTATION; MOLECULAR MODEL; NONSENSE MUTATION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PRKCSH GENE; PROTEIN FUNCTION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; RNA SPLICING; SEC63 GENE; SEQUENCE HOMOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; KIDNEY POLYCYSTIC DISEASE; MUTATION;

EID: 77954567518     PISSN: 00099163     EISSN: 13990004     Source Type: Journal    
DOI: 10.1111/j.1399-0004.2009.01353.x     Document Type: Article
Times cited : (39)

References (31)
  • 1
    • 0026737604 scopus 로고
    • Congenital diseases of intrahepatic bile ducts: variations on the theme " ductal plate malformation"
    • Desmet VJ. Congenital diseases of intrahepatic bile ducts: variations on the theme " ductal plate malformation" Hepatology 1992, 16:1069-1083.
    • (1992) Hepatology , vol.16 , pp. 1069-1083
    • Desmet, V.J.1
  • 2
    • 39749139438 scopus 로고    scopus 로고
    • Cysts of PRKCSH mutated polycystic liver disease patients lack hepatocystin but express Sec63p
    • Waanders E, Croes HJ, Maass CN. Cysts of PRKCSH mutated polycystic liver disease patients lack hepatocystin but express Sec63p. Histochem Cell Biol 2008, 129:301-310.
    • (2008) Histochem Cell Biol , vol.129 , pp. 301-310
    • Waanders, E.1    Croes, H.J.2    Maass, C.N.3
  • 3
    • 0037235571 scopus 로고    scopus 로고
    • Polycystic liver disease is genetically heterogeneous: clinical and linkage studies in eight Finnish families
    • Tahvanainen P, Tahvanainen E, Reijonen H. Polycystic liver disease is genetically heterogeneous: clinical and linkage studies in eight Finnish families. J Hepatol 2003, 38:39-43.
    • (2003) J Hepatol , vol.38 , pp. 39-43
    • Tahvanainen, P.1    Tahvanainen, E.2    Reijonen, H.3
  • 4
    • 0037219154 scopus 로고    scopus 로고
    • Clinical profile of autosomal dominant polycystic liver disease
    • Qian Q, Li A, King BF. Clinical profile of autosomal dominant polycystic liver disease. Hepatology 2003, 37:164-171.
    • (2003) Hepatology , vol.37 , pp. 164-171
    • Qian, Q.1    Li, A.2    King, B.F.3
  • 5
    • 0030026387 scopus 로고    scopus 로고
    • Isolated polycystic liver disease as a distinct genetic disease, unlinked to polycystic kidney disease 1 and polycystic kidney disease 2
    • Pirson Y, Lannoy N, Peters D. Isolated polycystic liver disease as a distinct genetic disease, unlinked to polycystic kidney disease 1 and polycystic kidney disease 2. Hepatology 1996, 23:249-252.
    • (1996) Hepatology , vol.23 , pp. 249-252
    • Pirson, Y.1    Lannoy, N.2    Peters, D.3
  • 7
    • 0037370308 scopus 로고    scopus 로고
    • Germline mutations in PRKCSH are associated with autosomal dominant polycystic liver disease
    • Drenth JP, Te Morsche RH, Smink R. Germline mutations in PRKCSH are associated with autosomal dominant polycystic liver disease. Nat Genet 2003, 33:345-347.
    • (2003) Nat Genet , vol.33 , pp. 345-347
    • Drenth, J.P.1    Te Morsche, R.H.2    Smink, R.3
  • 8
    • 0037371324 scopus 로고    scopus 로고
    • Mutations in PRKCSH cause isolated autosomal dominant polycystic liver disease
    • Li A, Davila S, Furu L. Mutations in PRKCSH cause isolated autosomal dominant polycystic liver disease. Am J Hum Genet 2003, 72:691-703.
    • (2003) Am J Hum Genet , vol.72 , pp. 691-703
    • Li, A.1    Davila, S.2    Furu, L.3
  • 9
    • 0035807024 scopus 로고    scopus 로고
    • Quaternary and domain structure of glycoprotein processing glucosidase II
    • Trombetta ES, Fleming KG, Helenius A. Quaternary and domain structure of glycoprotein processing glucosidase II. Biochemistry 2001, 40:10717-10722.
    • (2001) Biochemistry , vol.40 , pp. 10717-10722
    • Trombetta, E.S.1    Fleming, K.G.2    Helenius, A.3
  • 10
    • 2642528473 scopus 로고    scopus 로고
    • Mutations in SEC63 cause autosomal dominant polycystic liver disease
    • Davila S, Furu L, Gharavi AG. Mutations in SEC63 cause autosomal dominant polycystic liver disease. Nat Genet 2004, 36:575-577.
    • (2004) Nat Genet , vol.36 , pp. 575-577
    • Davila, S.1    Furu, L.2    Gharavi, A.G.3
  • 11
    • 0034640293 scopus 로고    scopus 로고
    • Mammalian Sec61 is associated with Sec62 and Sec63
    • Meyer HA, Grau H, Kraft R. Mammalian Sec61 is associated with Sec62 and Sec63. J Biol Chem 2000, 275:14550-14557.
    • (2000) J Biol Chem , vol.275 , pp. 14550-14557
    • Meyer, H.A.1    Grau, H.2    Kraft, R.3
  • 12
    • 0034667598 scopus 로고    scopus 로고
    • Proteins of the endoplasmic-reticulum-associated degradation pathway: domain detection and function prediction
    • Ponting CP. Proteins of the endoplasmic-reticulum-associated degradation pathway: domain detection and function prediction. Biochem J 2000, 351((Pt 2)):527-535.
    • (2000) Biochem J , vol.351 , Issue.PART 2 , pp. 527-535
    • Ponting, C.P.1
  • 13
    • 33750106149 scopus 로고    scopus 로고
    • Extensive mutational analysis of PRKCSH and SEC63 broadens the spectrum of polycystic liver disease
    • Waanders E, Te Morsche RH, de Man RA. Extensive mutational analysis of PRKCSH and SEC63 broadens the spectrum of polycystic liver disease. Hum Mutat 2006, 27:830.
    • (2006) Hum Mutat , vol.27 , pp. 830
    • Waanders, E.1    Te Morsche, R.H.2    de Man, R.A.3
  • 14
    • 0042316754 scopus 로고    scopus 로고
    • Standardizing mutation nomenclature: why bother?
    • den Dunnen JT, Paalman MH. Standardizing mutation nomenclature: why bother? Hum Mutat 2003, 22:181-182.
    • (2003) Hum Mutat , vol.22 , pp. 181-182
    • den Dunnen, J.T.1    Paalman, M.H.2
  • 15
    • 0030787520 scopus 로고    scopus 로고
    • Improved splice site detection in Genie
    • Reese MG, Eeckman FH, Kulp D. Improved splice site detection in Genie. J Comput Biol 1997, 4:311-323.
    • (1997) J Comput Biol , vol.4 , pp. 311-323
    • Reese, M.G.1    Eeckman, F.H.2    Kulp, D.3
  • 17
    • 0037093644 scopus 로고    scopus 로고
    • Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field
    • Krieger E, Koraimann G, Vriend G. Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field. Proteins 2002, 47:393-402.
    • (2002) Proteins , vol.47 , pp. 393-402
    • Krieger, E.1    Koraimann, G.2    Vriend, G.3
  • 18
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999, 292:195-202.
    • (1999) J Mol Biol , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 19
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin LJ, Bryson K, Jones DT. The PSIPRED protein structure prediction server. Bioinformatics 2000, 16:404-405.
    • (2000) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 20
    • 65649108490 scopus 로고    scopus 로고
    • Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods
    • Thusberg J, Vihinen M. Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods. Hum Mutat 2009, 30:703-714.
    • (2009) Hum Mutat , vol.30 , pp. 703-714
    • Thusberg, J.1    Vihinen, M.2
  • 21
    • 0036713510 scopus 로고    scopus 로고
    • Human non-synonymous SNPs: server and survey
    • Ramensky V, Bork P, Sunyaev S. Human non-synonymous SNPs: server and survey. Nucleic Acids Res 2002, 30:3894-3900.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3894-3900
    • Ramensky, V.1    Bork, P.2    Sunyaev, S.3
  • 22
    • 10344242920 scopus 로고    scopus 로고
    • Sequence-based prediction of pathological mutations
    • Ferrer-Costa C, Orozco M, de la Cruz X. Sequence-based prediction of pathological mutations. Proteins 2004, 57:811-819.
    • (2004) Proteins , vol.57 , pp. 811-819
    • Ferrer-Costa, C.1    Orozco, M.2    de la Cruz, X.3
  • 23
    • 0043122919 scopus 로고    scopus 로고
    • SIFT: predicting amino acid changes that affect protein function
    • Ng PC, Henikoff S. SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res 2003, 31:3812-3814.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3812-3814
    • Ng, P.C.1    Henikoff, S.2
  • 24
    • 1842427829 scopus 로고    scopus 로고
    • Abnormal hepatocystin caused by truncating PRKCSH mutations leads to autosomal dominant polycystic liver disease
    • Drenth JP, Tahvanainen E, Te Morsche RH. Abnormal hepatocystin caused by truncating PRKCSH mutations leads to autosomal dominant polycystic liver disease. Hepatology 2004, 39:924-931.
    • (2004) Hepatology , vol.39 , pp. 924-931
    • Drenth, J.P.1    Tahvanainen, E.2    Te Morsche, R.H.3
  • 25
    • 31644432533 scopus 로고    scopus 로고
    • Autosomal dominant polycystic liver disease in a family without polycystic kidney disease associated with a novel missense protein kinase C substrate 80K-H mutation
    • Peces R, Drenth JP, Te Morsche RH. Autosomal dominant polycystic liver disease in a family without polycystic kidney disease associated with a novel missense protein kinase C substrate 80K-H mutation. World J Gastroenterol 2005, 11:7690-7693.
    • (2005) World J Gastroenterol , vol.11 , pp. 7690-7693
    • Peces, R.1    Drenth, J.P.2    Te Morsche, R.H.3
  • 26
    • 0031744522 scopus 로고    scopus 로고
    • Proof of " disease causing" mutation
    • Cotton RG, Scriver CR. Proof of " disease causing" mutation. Hum Mutat 1998, 12:1-3.
    • (1998) Hum Mutat , vol.12 , pp. 1-3
    • Cotton, R.G.1    Scriver, C.R.2
  • 27
    • 0028351429 scopus 로고
    • Evaluation of ultrasonographic diagnostic criteria for autosomal dominant polycystic kidney disease 1
    • Ravine D, Gibson RN, Walker RG. Evaluation of ultrasonographic diagnostic criteria for autosomal dominant polycystic kidney disease 1. Lancet 1994, 343:824-827.
    • (1994) Lancet , vol.343 , pp. 824-827
    • Ravine, D.1    Gibson, R.N.2    Walker, R.G.3
  • 28
    • 77249164094 scopus 로고    scopus 로고
    • PRKCSH/80K-H, the protein mutated in polycystic liver disease, protects polycystin-2/TRPP2 against HERP-mediated degradation
    • Oct 3. [Epub ahead of print] PMID: 19801576.
    • Gao H, Wang Y, Wegierski T. PRKCSH/80K-H, the protein mutated in polycystic liver disease, protects polycystin-2/TRPP2 against HERP-mediated degradation. Hum Mol Genet 2009, Oct 3. [Epub ahead of print] PMID: 19801576.
    • (2009) Hum Mol Genet
    • Gao, H.1    Wang, Y.2    Wegierski, T.3
  • 29
    • 7544231794 scopus 로고    scopus 로고
    • Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
    • Lorincz MC, Dickerson DR, Schmitt M. Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nat Struct Mol Biol 2004, 11:1068-1075.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 1068-1075
    • Lorincz, M.C.1    Dickerson, D.R.2    Schmitt, M.3
  • 30
    • 0035802289 scopus 로고    scopus 로고
    • Susceptibility of nonpromoter CpG islands to de novo methylation in normal and neoplastic cells
    • Nguyen C, Liang G, Nguyen TT. Susceptibility of nonpromoter CpG islands to de novo methylation in normal and neoplastic cells. J Natl Cancer Inst 2001, 93:1465-1472.
    • (2001) J Natl Cancer Inst , vol.93 , pp. 1465-1472
    • Nguyen, C.1    Liang, G.2    Nguyen, T.T.3
  • 31
    • 0028358421 scopus 로고
    • The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA
    • Shen JC, Rideout WM, Jones PA. The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA. Nucleic Acids Res 1994, 22:972-976.
    • (1994) Nucleic Acids Res , vol.22 , pp. 972-976
    • Shen, J.C.1    Rideout, W.M.2    Jones, P.A.3


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