메뉴 건너뛰기




Volumn 2010, Issue , 2010, Pages

Features of recent codon evolution: A comparative polymorphism-fixation study

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; CYSTEINE; GLYCINE; PYRIMIDINE; THREONINE;

EID: 77954556594     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2010/202918     Document Type: Article
Times cited : (3)

References (27)
  • 1
    • 0036792118 scopus 로고    scopus 로고
    • Evolution of amino acid frequencies in proteins over deep time: Inferred order of introduction of amino acids into the genetic code
    • Brooks D. J., Fresco J. R., Lesk A. M., Singh M., Evolution of amino acid frequencies in proteins over deep time: inferred order of introduction of amino acids into the genetic code Molecular Biology and Evolution 2002 19 10 1645 1655
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.10 , pp. 1645-1655
    • Brooks, D.J.1    Fresco, J.R.2    Lesk, A.M.3    Singh, M.4
  • 3
    • 37049243502 scopus 로고
    • A production of amino acids under possible primitive earth conditions
    • Miller S. L., A production of amino acids under possible primitive earth conditions Science 1953 117 3046 528 529
    • (1953) Science , vol.117 , Issue.3046 , pp. 528-529
    • Miller, S.L.1
  • 4
    • 0036463713 scopus 로고    scopus 로고
    • Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor
    • Brooks D. J., Fresco J. R., Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor Molecular Cellular Proteomics 2002 1 2 125 131
    • (2002) Molecular Cellular Proteomics , vol.1 , Issue.2 , pp. 125-131
    • Brooks, D.J.1    Fresco, J.R.2
  • 5
    • 14144251192 scopus 로고    scopus 로고
    • A universal trend of amino acid gain and loss in protein evolution
    • Jordan I. K., Kondrashov F. A., Adzhubei I. A., A universal trend of amino acid gain and loss in protein evolution Nature 2005 433 7026 633 638
    • (2005) Nature , vol.433 , Issue.7026 , pp. 633-638
    • Jordan, I.K.1    Kondrashov, F.A.2    Adzhubei, I.A.3
  • 6
    • 30744449224 scopus 로고    scopus 로고
    • Apparent trends of amino acid gain and loss in protein evolution due to nearly neutral variation
    • McDonald J. H., Apparent trends of amino acid gain and loss in protein evolution due to nearly neutral variation Molecular Biology and Evolution 2006 23 2 240 244
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 240-244
    • McDonald, J.H.1
  • 7
    • 33747828645 scopus 로고    scopus 로고
    • Protein evolution: Causes of trends in amino-acid gain and loss
    • Hurst L. D., Feil E. J., Rocha E. P. C., Protein evolution: causes of trends in amino-acid gain and loss Nature 2006 442 7105 E11 E12
    • (2006) Nature , vol.442 , Issue.7105
    • Hurst, L.D.1    Feil, E.J.2    Rocha, E.P.C.3
  • 8
    • 33749453792 scopus 로고    scopus 로고
    • Mutational spectrum in the recent human genome inferred by single nucleotide polymorphisms
    • DOI 10.1016/j.ygeno.2006.06.003, PII S0888754306001741
    • Jiang C., Zhao Z., Mutational spectrum in the recent human genome inferred by single nucleotide polymorphisms Genomics 2006 88 5 527 534 (Pubitemid 44512075)
    • (2006) Genomics , vol.88 , Issue.5 , pp. 527-534
    • Jiang, C.1    Zhao, Z.2
  • 11
    • 0342614926 scopus 로고    scopus 로고
    • Codon usage tabulated from international DNA sequence databases: Status for the year 2000
    • Nakamura Y., Gojobori T., Ikemura T., Codon usage tabulated from international DNA sequence databases: status for the year 2000 Nucleic Acids Research 2000 28 1 292
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 292
    • Nakamura, Y.1    Gojobori, T.2    Ikemura, T.3
  • 12
    • 0037326506 scopus 로고    scopus 로고
    • Compositional evolution of noncoding DNA in the human and chimpanzee genomes
    • Webster M. T., Smith N. G. C., Ellegren H., Compositional evolution of noncoding DNA in the human and chimpanzee genomes Molecular Biology and Evolution 2003 20 2 278 286
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.2 , pp. 278-286
    • Webster, M.T.1    Smith, N.G.C.2    Ellegren, H.3
  • 13
    • 0033921902 scopus 로고    scopus 로고
    • Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
    • Zhang J., Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes Journal of Molecular Evolution 2000 50 1 56 68
    • (2000) Journal of Molecular Evolution , vol.50 , Issue.1 , pp. 56-68
    • Zhang, J.1
  • 15
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • Crick F. H. C., The origin of the genetic code Journal of Molecular Biology 1968 38 3 367 379
    • (1968) Journal of Molecular Biology , vol.38 , Issue.3 , pp. 367-379
    • Crick, F.H.C.1
  • 17
    • 0025343836 scopus 로고
    • Evolution of the mitochondrial genetic code IV. AAA as an asparagine codon in some animal mitochondria
    • Ohama T., Osawa S., Watanabe K., Jukes T. H., Evolution of the mitochondrial genetic code IV. AAA as an asparagine codon in some animal mitochondria Journal of Molecular Evolution 1990 30 4 329 332
    • (1990) Journal of Molecular Evolution , vol.30 , Issue.4 , pp. 329-332
    • Ohama, T.1    Osawa, S.2    Watanabe, K.3    Jukes, T.H.4
  • 18
    • 0027198406 scopus 로고
    • A small segment of the MAT 1 transcript promotes mRNA decay in Saccharomyces cerevisiae: A stimulatory role for rare codons
    • Caponigro G., Muhlrad D., Parker R., A small segment of the MAT 1 transcript promotes mRNA decay in Saccharomyces cerevisiae: a stimulatory role for rare codons Molecular and Cellular Biology 1993 13 9 5141 5148
    • (1993) Molecular and Cellular Biology , vol.13 , Issue.9 , pp. 5141-5148
    • Caponigro, G.1    Muhlrad, D.2    Parker, R.3
  • 19
    • 19544372278 scopus 로고    scopus 로고
    • Context-dependent codon bias and messenger RNA longevity in the yeast transcriptome
    • Carlini D. B., Context-dependent codon bias and messenger RNA longevity in the yeast transcriptome Molecular Biology and Evolution 2005 22 6 1403 1411
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.6 , pp. 1403-1411
    • Carlini, D.B.1
  • 20
    • 0019198357 scopus 로고
    • Mutagenic deamination of cytosine residues in DNA
    • Duncan B. K., Miller J. H., Mutagenic deamination of cytosine residues in DNA Nature 1980 287 5782 560 561
    • (1980) Nature , vol.287 , Issue.5782 , pp. 560-561
    • Duncan, B.K.1    Miller, J.H.2
  • 21
    • 4744359031 scopus 로고    scopus 로고
    • The influence of neighboring-nucleotide composition on single nucleotide polymorphisms (SNPs) in the mouse genome and its comparison with human SNPs
    • Zhang F., Zhao Z., The influence of neighboring-nucleotide composition on single nucleotide polymorphisms (SNPs) in the mouse genome and its comparison with human SNPs Genomics 2004 84 5 785 795
    • (2004) Genomics , vol.84 , Issue.5 , pp. 785-795
    • Zhang, F.1    Zhao, Z.2
  • 22
    • 29344432096 scopus 로고    scopus 로고
    • Sequence context analysis in the mouse genome: Single nucleotide polymorphisms and CpG island sequences
    • DOI 10.1016/j.ygeno.2005.09.012, PII S0888754305002600
    • Zhao Z., Zhang F., Sequence context analysis in the mouse genome: single nucleotide polymorphisms and CpG island sequences Genomics 2006 87 1 68 74 (Pubitemid 43005103)
    • (2006) Genomics , vol.87 , Issue.1 , pp. 68-74
    • Zhao, Z.1    Zhang, F.2
  • 23
    • 32444436681 scopus 로고    scopus 로고
    • Sequence context analysis of 8.2 million single nucleotide polymorphisms in the human genome
    • DOI 10.1016/j.gene.2005.08.024, PII S0378111905005603
    • Zhao Z., Zhang F., Sequence context analysis of 8.2 million single nucleotide polymorphisms in the human genome Gene 2006 366 2 316 324 (Pubitemid 43227956)
    • (2006) Gene , vol.366 , Issue.2 , pp. 316-324
    • Zhao, Z.1    Zhang, F.2
  • 24
    • 0036144777 scopus 로고    scopus 로고
    • The KA / KS ratio test for assessing the protein-coding potential of genomic regions: An empirical and simulation study
    • Nekrutenko A., Makova K. D., Li W.-H., The KA / KS ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study Genome Research 2002 12 1 198 202
    • (2002) Genome Research , vol.12 , Issue.1 , pp. 198-202
    • Nekrutenko, A.1    Makova, K.D.2    Li, W.-H.3
  • 25
    • 0036852246 scopus 로고    scopus 로고
    • Neighboring-nucleotide effects on single nucleotide polymorphisms: A study of 2.6 million polymorphisms across the human genome
    • Zhao Z., Boerwinkle E., Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome Genome Research 2002 12 11 1679 1686
    • (2002) Genome Research , vol.12 , Issue.11 , pp. 1679-1686
    • Zhao, Z.1    Boerwinkle, E.2
  • 26
    • 0029954125 scopus 로고    scopus 로고
    • Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: The phylogenetic significance of third-position transversions
    • Yoder A. D., Vilgalys R., Ruvolo M., Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: the phylogenetic significance of third-position transversions Molecular Biology and Evolution 1996 13 10 1339 1350
    • (1996) Molecular Biology and Evolution , vol.13 , Issue.10 , pp. 1339-1350
    • Yoder, A.D.1    Vilgalys, R.2    Ruvolo, M.3
  • 27
    • 0029995154 scopus 로고    scopus 로고
    • Cleavage of oligoribonucleotides by the 2′, 5′ -oligoadenylate- dependent ribonuclease L
    • Carroll S. S., Chen E., Viscount T., Cleavage of oligoribonucleotides by the 2′, 5′ -oligoadenylate- dependent ribonuclease L The Journal of Biological Chemistry 1996 271 9 4988 4992
    • (1996) The Journal of Biological Chemistry , vol.271 , Issue.9 , pp. 4988-4992
    • Carroll, S.S.1    Chen, E.2    Viscount, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.