One-particle-thick, solvent-free, coarse-grained model for biological and biomimetic fluid membranes

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 82, Issue 1, 2010, Pages

  Yuan, Hongyan ^a   Huang, Changjin ^a   Li, Ju ^b   Lykotrafitis, George ^c   Zhang, Sulin ^a  

^a The Pennsylvania State University   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

^c UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMISTIC SIMULATIONS; BENDING RIGIDITY; COARSE GRAINED MODELS; COARSE-GRAINED; CONTROL DIFFUSIVITIES; DIFFERENT LENGTH SCALE; FLUID MEMBRANE; FLUID VESICLES; INTERACTION STRENGTH; LIPID MOLECULES; MATHEMATICAL FORMS; MEMBRANE MODELS; MESOSCOPICS; MICRO-SCALES; MODEL MEMBRANES; MULTICOMPONENTS; NANO SCALE; PAIR POTENTIAL; PARTICLE ORIENTATION; POTENTIAL PARAMETERS; SELECTED EXAMPLES; SELF-ASSEMBLE; SHAPE TRANSFORMATION; SOLVENT FREE; SPONTANEOUS CURVATURE; THICK FLUIDS; TIME-SCALES; TOPOLOGICAL CHANGES;

ANISOTROPIC FLUIDS; ANISOTROPY; BIOLOGICAL MEMBRANES; BIOMIMETICS; CYTOLOGY; FLUIDS; PHASE SEPARATION; RIGIDITY;

COMPUTER SIMULATION;

EID: 77954503599     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.82.011905     Document Type: Article

References (57)

1. L. F. Zhang, K. Yu, and A. Eisenberg, Science 272, 1777 (1996). 10.1126/science.272.5269.1777
2. R. R. Gullapalli, M. C. Demirel, and P. J. Butler, Phys. Chem. Chem. Phys. 10, 3548 (2008). 10.1039/b716979e
3. M. Deserno, Macromol. Rapid Commun. 30, 752 (2009). 10.1002/marc. 200900090
4. H. Noguchi, J. Phys. Soc. Jpn. 78, 041007 (2009). 10.1143/JPSJ.78.041007
5. R. Goetz and R. Lipowsky, J. Chem. Phys. 108, 7397 (1998). 10.1063/1.476160
6. M. Laradji and P. B. Sunil Kumar, Phys. Rev. Lett. 93, 198105 (2004). 10.1103/PhysRevLett.93.198105
7. S. Yamamoto and S. Hyodo, J. Chem. Phys. 118, 7937 (2003). 10.1063/1.1563613
8. H. Noguchi and M. Takasu, Phys. Rev. E 64, 041913 (2001). 10.1103/PhysRevE.64.041913
9. O. Farago, J. Chem. Phys. 119, 596 (2003). 10.1063/1.1578612
10. Z. J. Wang and D. Frenkel, J. Chem. Phys. 122, 234711 (2005). 10.1063/1.1927509
11. I. R. Cooke and M. Deserno, J. Chem. Phys. 123, 224710 (2005). 10.1063/1.2135785
12. G. Brannigan, P. F. Philips, and F. L. H. Brown, Phys. Rev. E 72, 011915 (2005). 10.1103/PhysRevE.72.011915
13. J. D. Revalee, M. Laradji, and P. B. S. Kumar, J. Chem. Phys. 128, 035102 (2008). 10.1063/1.2825300
14. B. J. Reynwar, Nature (London) 447, 461 (2007). 10.1038/nature05840
15. I. R. Cooke, K. Kremer, and M. Deserno, Phys. Rev. E 72, 011506 (2005). 10.1103/PhysRevE.72.011506
16. J. M. Drouffe, A. C. Maggs, and S. Leibler, Science 254, 1353 (1991). 10.1126/science.1962193
17. G. Brannigan and F. L. H. Brown, J. Chem. Phys. 120, 1059 (2004). 10.1063/1.1625913
18. P. Ballone and M. G. Del Popolo, Phys. Rev. E 73, 031404 (2006). 10.1103/PhysRevE.73.031404
19. T. Kohyama, Physica A 388, 3334 (2009). 10.1016/j.physa.2009.05.011
20. H. Noguchi and G. Gompper, Proc. Natl. Acad. Sci. U.S.A. 102, 14159 (2005). 10.1073/pnas.0504243102
21. E. Atilgan and S. X. Sun, J. Chem. Phys. 126, 095102 (2007). 10.1063/1.2483862
22. G. Gompper and D. M. Kroll, J. Phys.: Condens. Matter 9, 8795 (1997). 10.1088/0953-8984/9/42/001
23. H. G. Dobereiner, Phys. Rev. Lett. 91, 048301 (2003). 10.1103/PhysRevLett.91.048301
24. J. Li, Biophys. J. 88, 3707 (2005). 10.1529/biophysj.104.047332
25. M. Dao, J. Li, and S. Suresh, Mater. Sci. Eng., C 26, 1232 (2006). 10.1016/j.msec.2005.08.020
26. J. Li, Proc. Natl. Acad. Sci. U.S.A. 104, 4937 (2007). 10.1073/pnas.0700257104
27. F. Feng and W. S. Klug, J. Comput. Phys. 220, 394 (2006). 10.1016/j.jcp.2006.05.023
28. H. Noguchi and G. Gompper, Phys. Rev. E 73, 021903 (2006). 10.1103/PhysRevE.73.021903
29. L. T. Gao, X. Q. Feng, and H. J. Gao, J. Comput. Phys. 228, 4162 (2009). 10.1016/j.jcp.2009.02.034
30. T. Biben, K. Kassner, and C. Misbah, Phys. Rev. E 72, 041921 (2005). 10.1103/PhysRevE.72.041921
31. Q. Du, C. Liu, and X. Q. Wang, J. Comput. Phys. 198, 450 (2004). 10.1016/j.jcp.2004.01.029
32. W. Humphrey, A. Dalke, and K. Schulten, J. Mol. Graphics 14, 33 (1996). 10.1016/0263-7855(96)00018-5
33. J. G. Gay and B. J. Berne, J. Chem. Phys. 74, 3316 (1981). 10.1063/1.441483
34. R. Everaers and M. R. Ejtehadi, Phys. Rev. E 67, 041710 (2003). 10.1103/PhysRevE.67.041710
35. S. Nose, Mol. Phys. 52, 255 (1984). 10.1080/00268978400101201
36. W. G. Hoover, Phys. Rev. A 31, 1695 (1985). 10.1103/PhysRevA.31.1695
37. H. J. C. Berendsen, J. Chem. Phys. 81, 3684 (1984). 10.1063/1.448118
38. R. Lipowsky and E. Sackmann, Structure and Dynamics of Membranes (Elsevier Science, Amesterdam, 1995), Vol. 1 and 2.
39. F. Brochard and J. F. Lennon, J. Phys. (Paris) 36, 1035 (1975). 10.1051/jphys:0197500360110103500
40. R. Goetz, G. Gompper, and R. Lipowsky, Phys. Rev. Lett. 82, 221 (1999). 10.1103/PhysRevLett.82.221
41. P. F. Fahey and W. W. Webb, Biochemistry 17, 3046 (1978). 10.1021/bi00608a016
42. W. Helfrich, Z. Naturforsch C 28, 693 (1973).
43. M. P. Sheetz and S. J. Singer, Proc. Natl. Acad. Sci. U.S.A. 71, 4457 (1974). 10.1073/pnas.71.11.4457
44. P. D. Blood and G. A. Voth, Proc. Natl. Acad. Sci. U.S.A. 103, 15068 (2006). 10.1073/pnas.0603917103
45. H. W. G. Lim, M. Wortis, and R. Mukhopadhyay, Proc. Natl. Acad. Sci. U.S.A. 99, 16766 (2002). 10.1073/pnas.202617299
46. U. Seifert, Adv. Phys. 46, 13 (1997). 10.1080/00018739700101488
47. U. Seifert, Phys. Rev. Lett. 70, 1335 (1993). 10.1103/PhysRevLett.70.1335
48. T. S. Ursell, W. S. Klug, and R. Phillips, Proc. Natl. Acad. Sci. U.S.A. 106, 13301 (2009). 10.1073/pnas.0903825106
49. H. Y. Yuan and S. L. Zhang, Appl. Phys. Lett. 96, 033704 (2010). 10.1063/1.3293303
50. S. L. Zhang, Adv. Mater. 21, 419 (2009). 10.1002/adma.200801393
51. M. Deserno and T. Bickel, EPL 62, 767 (2003). 10.1209/epl/i2003-00438-4
52. H. Strey and M. Peterson, Biophys. J. 69, 478 (1995). 10.1016/S0006-3495(95)79921-0
53. T. Auth, S. A. Safran, and N. S. Gov, Phys. Rev. E 76, 051910 (2007). 10.1103/PhysRevE.76.051910
54. Y. Park, Proc. Natl. Acad. Sci. U.S.A. 107, 1289 (2010). 10.1073/pnas.0910785107
55. Y. K. Park, Proc. Natl. Acad. Sci. U.S.A. 105, 13730 (2008). 10.1073/pnas.0806100105
56. S. T. Milner and S. A. Safran, Phys. Rev. A 36, 4371 (1987). 10.1103/PhysRevA.36.4371
57. H. Yuan, C. Huang, and S. Zhang, Soft Matter (to be published).