메뉴 건너뛰기




Volumn 46, Issue 3, 2010, Pages 616-621

Optimization of dna extraction from brown algae (phaeophyceae) based on a commercial kit

Author keywords

Brown algae; Commercial kit; DNA extraction; Fluorometry; Optimization; PCR; Quantification; Spectrophotometry

Indexed keywords

ALGAE; PHAEOPHYCEAE;

EID: 77954440433     PISSN: 00223646     EISSN: 15298817     Source Type: Journal    
DOI: 10.1111/j.1529-8817.2010.00817.x     Document Type: Article
Times cited : (14)

References (34)
  • 2
    • 0029949356 scopus 로고    scopus 로고
    • PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR
    • Ahn S J, Costa J, Emanuel J R. PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR. Nucleic Acids Res. 1996, 24:2623-5.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2623-2625
    • Ahn, S.J.1    Costa, J.2    Emanuel, J.R.3
  • 4
    • 31344466761 scopus 로고    scopus 로고
    • An application of tissue and DNA banking for genomics and conservation: the Ambrose Monell Cryo-Collection (AMCC)
    • Corthals A, Desalle R. An application of tissue and DNA banking for genomics and conservation: the Ambrose Monell Cryo-Collection (AMCC). Syst. Biol. 2005, 54:819-23.
    • (2005) Syst. Biol. , vol.54 , pp. 819-823
    • Corthals, A.1    Desalle, R.2
  • 5
    • 51249178630 scopus 로고
    • Isolation of DNA from plant high in polyphenolics
    • Couch J A, Fritz P J. Isolation of DNA from plant high in polyphenolics. Plant Mol. Biol. Rep. 1990, 8:8-12.
    • (1990) Plant Mol. Biol. Rep. , vol.8 , pp. 8-12
    • Couch, J.A.1    Fritz, P.J.2
  • 6
    • 0038273560 scopus 로고
    • A quick and inexpensive method for removing polysaccharides from plant genomic DNA
    • Fang G, Hammar S, Grumet R. A quick and inexpensive method for removing polysaccharides from plant genomic DNA. BioTechniques 1992, 13:52-6.
    • (1992) BioTechniques , vol.13 , pp. 52-56
    • Fang, G.1    Hammar, S.2    Grumet, R.3
  • 7
    • 0001165277 scopus 로고
    • Polyphenols in brown algae Fucus vesiculosus and Ascophyllum nodosum: chemical defenses against the marine herbivorous snail, Littorina littorea
    • Geiselman J A, McConnell O J. Polyphenols in brown algae Fucus vesiculosus and Ascophyllum nodosum: chemical defenses against the marine herbivorous snail, Littorina littorea. J. Chem. Ecol. 1981, 7:1115-33.
    • (1981) J. Chem. Ecol. , vol.7 , pp. 1115-1133
    • Geiselman, J.A.1    McConnell, O.J.2
  • 8
    • 0028817155 scopus 로고
    • Validity of nucleic acid purities monitored by 260nm/280nm absorbance ratios
    • Glasel J A. Validity of nucleic acid purities monitored by 260nm/280nm absorbance ratios. BioTechniques 1995, 18:62-3.
    • (1995) BioTechniques , vol.18 , pp. 62-63
    • Glasel, J.A.1
  • 11
  • 12
    • 0034107707 scopus 로고    scopus 로고
    • Modified CTAB protocol using a silica matrix for isolation of plant genomic DNA
    • Huang J C, Ge X J, Sun M. Modified CTAB protocol using a silica matrix for isolation of plant genomic DNA. BioTechniques 2000, 28:432-4.
    • (2000) BioTechniques , vol.28 , pp. 432-434
    • Huang, J.C.1    Ge, X.J.2    Sun, M.3
  • 13
    • 0026552444 scopus 로고
    • An efficient method for isolation of RNA and DNA from plants containing polyphenolics
    • John M E. An efficient method for isolation of RNA and DNA from plants containing polyphenolics. Nucleic Acids Res. 1992, 20:2381.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 2381
    • John, M.E.1
  • 14
    • 0041734768 scopus 로고    scopus 로고
    • Storage effects on genomic DNA in rolled and mature coca leaves
    • Johnson E L, Kim S H, Emche S D. Storage effects on genomic DNA in rolled and mature coca leaves. BioTechniques 2003, 35:310-6.
    • (2003) BioTechniques , vol.35 , pp. 310-316
    • Johnson, E.L.1    Kim, S.H.2    Emche, S.D.3
  • 15
    • 77954453010 scopus 로고    scopus 로고
    • Ultraviolet absorbing substances from Agarum fimbriatum (Phaeophyceae) protect Griffithsia pacifica from UV radiation
    • Kim K Y, Garbary D J, Hoffmann J, Duggins D. Ultraviolet absorbing substances from Agarum fimbriatum (Phaeophyceae) protect Griffithsia pacifica from UV radiation. J. Phycol. 2000, 36:36.
    • (2000) J. Phycol. , vol.36 , pp. 36
    • Kim, K.Y.1    Garbary, D.J.2    Hoffmann, J.3    Duggins, D.4
  • 16
    • 0033081270 scopus 로고    scopus 로고
    • Inclusion of polyvinylpyrrolidone in the polymerase chain reaction reverses the inhibitory effects of polyphenolic contamination of RNA
    • Koonjul P K, Brandt W F, Farrant J M, Lindsey G G. Inclusion of polyvinylpyrrolidone in the polymerase chain reaction reverses the inhibitory effects of polyphenolic contamination of RNA. Nucleic Acids Res. 1999, 27:915-6.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 915-916
    • Koonjul, P.K.1    Brandt, W.F.2    Farrant, J.M.3    Lindsey, G.G.4
  • 17
    • 0030048084 scopus 로고    scopus 로고
    • Relief of amplication inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • Kreader C A. Relief of amplication inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl. Environ. Microbiol. 1996, 62:1102-6.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 18
    • 29644445053 scopus 로고    scopus 로고
    • Interaction of tannic acid and its derivatives (ellagic and gallic acid) with calf thymus DNA and bovine serum albumin using spectroscopic method
    • Labieniec M, Gabryelak T. Interaction of tannic acid and its derivatives (ellagic and gallic acid) with calf thymus DNA and bovine serum albumin using spectroscopic method. J. Photochem. Photobiol. B Biol. 2006, 82:72-8.
    • (2006) J. Photochem. Photobiol. B Biol. , vol.82 , pp. 72-78
    • Labieniec, M.1    Gabryelak, T.2
  • 19
    • 0030043457 scopus 로고    scopus 로고
    • Measurement of 8-OhdG in DNA by HPLC/ECD: the importance of DNA purity
    • Laws G M, Adams S P. Measurement of 8-OhdG in DNA by HPLC/ECD: the importance of DNA purity. BioTechniques 1996, 20:36-8.
    • (1996) BioTechniques , vol.20 , pp. 36-38
    • Laws, G.M.1    Adams, S.P.2
  • 21
    • 0001033443 scopus 로고
    • Determination of alginate composition by a simple enzymatic assay
    • Østgaard K. Determination of alginate composition by a simple enzymatic assay. Hydrobiologia 1993, 260/261:513-20.
    • (1993) Hydrobiologia , vol.260-261 , pp. 513-520
    • Østgaard, K.1
  • 22
    • 0347391609 scopus 로고    scopus 로고
    • Inhibition of random amplified polymorphic DNAs (RAPDs) by plant polysaccharides
    • Pandey R N, Adams R P, Flournoy L E. Inhibition of random amplified polymorphic DNAs (RAPDs) by plant polysaccharides. Plant Mol. Biol. Rep. 1996, 14:17-22.
    • (1996) Plant Mol. Biol. Rep. , vol.14 , pp. 17-22
    • Pandey, R.N.1    Adams, R.P.2    Flournoy, L.E.3
  • 23
    • 0028112456 scopus 로고
    • Application of RAPD markers in an examination of heterosis in Gelidium vagum (Rhodophyta)
    • Patwary M U, Van Der Meer J P. Application of RAPD markers in an examination of heterosis in Gelidium vagum (Rhodophyta). J. Phycol. 1994, 30:91-7.
    • (1994) J. Phycol. , vol.30 , pp. 91-97
    • Patwary, M.U.1    Van Der Meer, J.P.2
  • 24
    • 0000007636 scopus 로고
    • Cell wall assembly in Fucus zygotes. I. Characterization of the polysaccharide components
    • Quatrano R S, Stevens P T. Cell wall assembly in Fucus zygotes. I. Characterization of the polysaccharide components. Plant Physiol. 1976, 58:224-31.
    • (1976) Plant Physiol. , vol.58 , pp. 224-231
    • Quatrano, R.S.1    Stevens, P.T.2
  • 25
    • 70149113077 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, Available at: (accessed on 25 February 2010)
    • R: A Language and Environment for Statistical Computing 2009, http://www.R-project.org, R Foundation for Statistical Computing, Vienna, Austria, Available at: (accessed on 25 February 2010)
    • (2009) R: A Language and Environment for Statistical Computing
  • 26
    • 34248334281 scopus 로고    scopus 로고
    • Comparative analysis of different DNA extraction protocols in fresh and herbarium specimens of the genus Dalbergia
    • Ribeiro R A, Lovato M B. Comparative analysis of different DNA extraction protocols in fresh and herbarium specimens of the genus Dalbergia. Genet. Mol. Res. 2007, 6:173-87.
    • (2007) Genet. Mol. Res. , vol.6 , pp. 173-187
    • Ribeiro, R.A.1    Lovato, M.B.2
  • 27
    • 0346452276 scopus 로고    scopus 로고
    • Cotton improvement - effect of lyophilization of cotton tissue on quality of extractable DNA, RNA, and protein
    • Saha S, Callahan F E, Dollar D A, Creech J B. Cotton improvement - effect of lyophilization of cotton tissue on quality of extractable DNA, RNA, and protein. J. Cotton Sci. 1997, 1:10-4.
    • (1997) J. Cotton Sci. , vol.1 , pp. 10-14
    • Saha, S.1    Callahan, F.E.2    Dollar, D.A.3    Creech, J.B.4
  • 28
    • 0004136246 scopus 로고    scopus 로고
    • 3th ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Sambrook J, Russell D. Molecular Cloning: A Laboratory Manual 2001, A8.20-1. 3th ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp
    • (2001) Molecular Cloning: A Laboratory Manual , vol.8 A , pp. 20-21
    • Sambrook, J.1    Russell, D.2
  • 29
    • 33645782783 scopus 로고    scopus 로고
    • Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications
    • Saunders G W. Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2005, 360:1879-88.
    • (2005) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.360 , pp. 1879-1888
    • Saunders, G.W.1
  • 30
    • 0032425756 scopus 로고    scopus 로고
    • Secretion of phenolic substances into the zygote wall and cell plate in embryos of Hormosira and Acrocarpia (Fucales, Phaeophyceae)
    • Schoenwaelder M E A, Clayton M N. Secretion of phenolic substances into the zygote wall and cell plate in embryos of Hormosira and Acrocarpia (Fucales, Phaeophyceae). J. Phycol. 1998, 34:969-80.
    • (1998) J. Phycol. , vol.34 , pp. 969-980
    • Schoenwaelder, M.E.A.1    Clayton, M.N.2
  • 31
    • 56349089012 scopus 로고    scopus 로고
    • Amplification of cox2 (∼620 bp) from 2 mg of up to 129 years old herbarium specimens, comparing 19 extraction methods and 15 polymerases
    • Telle S, Thine M. Amplification of cox2 (∼620 bp) from 2 mg of up to 129 years old herbarium specimens, comparing 19 extraction methods and 15 polymerases. PLoS ONE 2008, 3:e3584.
    • (2008) PLoS ONE , vol.3
    • Telle, S.1    Thine, M.2
  • 33
    • 34248326905 scopus 로고    scopus 로고
    • Plant genomic DNA isolation: an art or a science
    • Varma A, Padh H, Shrivastava N. Plant genomic DNA isolation: an art or a science. Biotechnol. J. 2007, 2:386-92.
    • (2007) Biotechnol. J. , vol.2 , pp. 386-392
    • Varma, A.1    Padh, H.2    Shrivastava, N.3
  • 34
    • 0006256539 scopus 로고
    • Identification of associating carbohydrate sequences with labelled oligosaccharides: localization of alginate-gelling subunits in cells walls of a brown alga
    • Vreelan V, Laetsch W M. Identification of associating carbohydrate sequences with labelled oligosaccharides: localization of alginate-gelling subunits in cells walls of a brown alga. Planta 1989, 177:423-34.
    • (1989) Planta , vol.177 , pp. 423-434
    • Vreelan, V.1    Laetsch, W.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.