Occurrence and chromosome distribution of retroelements and NUPT sequences in Copaifera langsdorffii Desf. (Caesalpinioideae)

Chromosome Research

Volumn 18, Issue 4, 2010, Pages 515-524

  Gaeta, Marcos Letaif ^a   Yuyama, Priscila Mary ^a   Sartori, Daniele ^a   Fungaro, Maria Helena Pelegrinelli ^a   Vanzela, André Luís Laforga ^a  

^a STATE UNIVERSITY OF LONDRINA   (Brazil)

Author keywords

Copaifera; cp rDNA like; GC rich bands; karyotype changes; rDNA; retroelements

Indexed keywords

DNA FRAGMENT; REPETITIVE DNA; SATELLITE DNA; GENETIC MARKER; RETROPOSON;

ARTICLE; CHROMOSOME BAND; CHROMOSOME INSERTION; CHROMOSOME ISOLATION; CHROMOSOME MARKER; CHROMOSOME PAIRING; CHROMOSOME TRANSLOCATION; COPAIFERA LANGSDORFFII; CROSSING OVER; DNA HYBRIDIZATION; FLUORESCENCE IN SITU HYBRIDIZATION; GC RICH SEQUENCE; GENE AMPLIFICATION; KARYOTYPE; MOLECULAR CLONING; NONHUMAN; PLASTID GENOME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RETROPOSON; TREE; FABACEAE; GENETIC MARKER; GENETICS; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PLANT CHROMOSOME;

CAESALPINIOIDEAE; COPAIFERA; COPAIFERA LANGSDORFFII;

BASE SEQUENCE; CHROMOSOMES, PLANT; CLONING, MOLECULAR; FABACEAE; GENETIC MARKERS; IN SITU HYBRIDIZATION, FLUORESCENCE; REPETITIVE SEQUENCES, NUCLEIC ACID; RETROELEMENTS;

EID: 77954430695     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-010-9131-1     Document Type: Article

References (31)

1. A Belyayev O Raskina E Nevo 2001 Chromosomal distribution of reverse transcriptase-containing retroelements in two Triticeae species Chromosome Res 9 129 136 10.1023/A:1009231019833 1:CAS:528:DC%2BD3MXislaqtbw%3D 11321368 (Pubitemid 32269985)
2. E Biondo STS Miotto MT Schifino-Wittmann 2005 Números cromossômicos e implicações sistemáticas em espécies da subfamília Caesalpinioideae (Leguminosae) ocorrentes na região sul do Brasil Rev Bras Bot 28 797 808 10.1590/S0100- 84042005000400014
3. JR Coleman 1982 Chromosome numbers of angiosperms collected in the state of São Paulo Braz J Genet 3 533 549
4. T Fernandes LNAA Rego M Nardy PM Yuyama ALL Vanzela 2009 Karyotype differentiation of four Cestrum species (Solanaceae) revealed by fluorescent chromosome banding and FISH Genet Mol Biol 32 320 327 10.1590/S1415- 47572009000200019
5. AJ Flavell E Dunbar R Anderson SR Pearce R Hartley A Kumar 1992 Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants Nucleic Acids Res 20 3639 3644 10.1093/nar/20.14.3639 1:CAS:528: DyaK38XlsVClsbc%3D 1379359
6. N Friesen A Brandes JS Heslop-Harrison 2001 Diversity, origin, and distribution of retrotransposons (gypsy and copia) in conifers Mol Biol Evol 18 1176 1188 1:CAS:528:DC%2BD3MXltVGrurw%3D 11420359
7. I Galasso GE Harrison D Pignone A Brandes JS Heslop-Harrison 1997 The distribution and organization of Ty1-copia-like retrotransposable elements in the genome of Vigna unguiculata (L.) Walp. (Cowpea) and its relatives Ann Bot 80 327 333 10.1006/anbo.1997.0443 1:CAS:528:DyaK2sXmt1Wjsrc%3D (Pubitemid 27393067)
8. RE Hanson MN Islam-Faridi CF Crane MS Zwick DG Czeschin JF Wendel TD McKnight HJ Price DM Stelly 1999 Ty1-copia-retrotransposon behavior in a polyploid cotton Chromosome Res 8 73 76 10.1023/A:1009239522541
9. CY Huang MA Ayliffe JN Timmis 2003 Direct measurement of the transfer rate of chloroplast DNA into the nucleus Nature 422 72 76 10.1038/nature01435 1:CAS:528:DC%2BD3sXhs1yit7w%3D 12594458 (Pubitemid 36323297)
10. A Kenton 1991 Heterochromatin accumulation, disposition and diversity in Gibasis karwinskyana (Commelinaceae) Chromosoma 100 467 478 10.1007/BF00364557
11. A Kumar JL Bennetzen 1999 Plant retrotransposons Annu Rev Genet 33 479 532 10.1146/annurev.genet.33.1.479 1:CAS:528:DC%2BD3cXhtVSms7k%3D 10690416 (Pubitemid 30083131)
12. D Leister 2005 Origin, evolution and genetic effects of nuclear insertions of organelle DNA Trends Genet 21 655 663 10.1016/j.tig.2005.09.004 1:CAS:528:DC%2BD2MXht1egsrbO 16216380 (Pubitemid 41608688)
13. RS Medeiros G Vieira 2008 Sustainability of extraction and production of copaiba (Copaifera multijuga Hayne) oleoresin in Manaus, AM, Brazil Forest Ecol Manag 256 282 288 10.1016/j.foreco.2008.04.041
14. M Mondin JA Santos-Serejo MLR Aguiar-Perecin 2007 Karyotype characterization of Crotalia juncea (L.) by chromosome banding and physical mapping of 18 S-5.8 S-26 S and 5 S rRNA gene sites Genet Mol Biol 30 65 72 10.1590/S1415-47572007000100013 1:CAS:528:DC%2BD2sXksVCrurg%3D
15. EA Moscone F Klein M Lambrou J Fuchs D Schweizer 1999 Quantitative karyotyping and dual-color FISH mapping of 5 S and 18 S-25 S rDNA probes in the cultivated Phaseolus species (Leguminosae) Genome 42 1224 1233 10.1139/gen-42-6-1224 1:CAS:528:DC%2BD3cXpt12qtg%3D%3D 10659791
16. L Natali S Santini T Giordani S Minelli P Maestrini PG Cionini A Cavallini 2006 Distribution of Ty3-gypsy- and Ty1-copia-like DNA sequences in the genus Helianthus and other Asteraceae Genome 49 64 72 10.1139/g05-058 1:CAS:528:DC%2BD28XivVGgtro%3D 16462902
17. A Navrátilová P Neumann J Macas 2003 Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences Ann Bot 91 921 926 10.1093/aob/mcg099 12770847 (Pubitemid 41295749)
18. P Neumann A Koblížková A Navrátilová J Macas 2006 Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement Genetics 173 1047 1056 10.1534/genetics.106.056259 1:CAS:528:DC%2BD28Xns12qtro%3D 16585134 (Pubitemid 43945918)
19. N Ohmido S Sato S Tabata K Fukui 2007 Chromosome maps of legumes Chromosome Res 15 97 103 10.1007/s10577-006-1109-7 1:CAS:528: DC%2BD2sXhs1CktL8%3D 17205385 (Pubitemid 46295264)
20. F Pedroni M Sanchez FAM Santos 2002 Fenologia da copaíba (Copaifera langsdorffii Desf.-Leguminosae, Caesalpinioideae) em uma floresta semidecídua no sudeste do Brasil Rev Bras Bot 25 183 194 10.1590/S0100-84042002000200007
21. A Pedrosa N Sandal J Stougaard D Schweizer A Bachmair 2002 Chromosomal map of the model legume Lotus japonicus Genetics 161 1661 1672 1:CAS:528:DC%2BD38XnsVClu7k%3D 12196409
22. A Pedrosa-Harand J Kami P Gepts V Geffroy D Schweizer 2009 Cytogenetic mapping of common bean chromosomes reveals a less compartmentalized small-genome plant species Chromosome Res 17 405 417 10.1007/s10577-009-9031-4 1:CAS:528:DC%2BD1MXlvV2itb4%3D 19330455
23. S Porebski LG Bailev RB Bernard 1997 Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components Plant Mol Biol Report 15 8 15 10.1007/BF02772108 1:CAS:528: DyaK2sXivVejsbs%3D
24. S Santini A Cavallini L Natali S Minelli F Maggini PG Cionini 2002 Ty1/copia- and Ty3/gypsy-like DNA sequences in Helianthus species Chromosoma 111 192 200 10.1007/s00412-002-0196-2 1:CAS:528:DC%2BD38XntlOmtb0%3D 12355209
25. D Schweizer 1976 Reverse fluorescent chromosome banding with chromomycin and DAPI Chromosoma 58 307 324 10.1007/BF00292840 1:STN:280: DyaE2s%2FmvVWitQ%3D%3D 137107
26. D Schweizer J Loidl 1987 A model for heterochromatin dispersion and the evolution of C-band patterns Chromosoma Today 9 61 74
27. JG Seijo GI Lavia A Fernández A Krapovickas D Ducasse EA Moscone 2004 Physical mapping of the 5 S and 18 S-25 S rRNA genes by FISH as evidence that Arachis duranensis and A. ipaensis are the wild diploid progenitors of A. hypogaea (Leguminosae) Am J Bot 91 1294 1303 10.3732/ajb.91.9.1294 1:CAS:528:DC%2BD2cXps1Klt7w%3D
28. MGC Souza AM Benko-Iseppon 2004 Cytogenetics and chromosome banding patterns in Caesalpinioideae and Papilionioideae species of Pará, Amazonas, Brazil Bot J Linn Soc 144 181 191 10.1111/j.1095-8339.2003.00230.x (Pubitemid 38231164)
29. E Todorovska 2007 Retrotransposons and their role in plant-genome evolution Biotechnol Biotechnol Equip 21 294 305 1:CAS:528:DC%2BD2sXhtFOlurfL
30. MC Ungerer SC Strakosh KM Stimpson 2009 Proliferation of Ty3-gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data BMC Biol 7 1 13 10.1186/1741-7007-7-40 10.1186/1741-7007-7-40
31. ALL Vanzela CF Ruas MF Oliveira PM Ruas 2002 Characterization of diploid, tetraploid and hexaploid Helianthus species by chromosome banding and FISH with 45S rDNA probe Genetica 114 105 111 10.1023/A:1015171625890 1:CAS:528:DC%2BD38XksFSktLw%3D 12041823 (Pubitemid 34519765)