Analysis of 5s rDNA organization and variation in polyploid hybrids from crosses of different fish subfamilies

Journal of Experimental Zoology Part B: Molecular and Developmental Evolution

Volumn 314 B, Issue 5, 2010, Pages 403-411

  Qin, Qinbo ^a   He, Weiguo ^a   Liu, Shaojun ^a   Wang, Jing ^a   Xiao, Jun ^a   Liu, Yun ^a  

^a HUNAN NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

PRIMER DNA; RIBOSOME DNA; RNA 5S;

ANIMAL; ARTICLE; CROSS BREEDING; FISH; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; POLYPLOIDY; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING;

ANIMALS; BASE SEQUENCE; BLOTTING, SOUTHERN; CROSSES, GENETIC; DNA PRIMERS; DNA, RIBOSOMAL; FISHES; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYPLOIDY; RNA, RIBOSOMAL, 5S; SEQUENCE HOMOLOGY, NUCLEIC ACID;

CARASSIUS; HYPEROGLYPHE POROSA; VERTEBRATA;

EID: 77954302315     PISSN: 15525007     EISSN: 15525015     Source Type: Journal    
DOI: 10.1002/jez.b.21346     Document Type: Article

References (43)

1. Adams KL, Wendel JF. 2005. Polyploidy and genome evolution in plants. Curr Opin Plant Biol 8:135-141.
2. Bogenhagen DF, Brown DD. 1981. Nucleotide sequences in Xenopus 5S DNA required for transcription terminator. Cell 14:261-270.
3. Badaeva ED, Amosova AV, Muravenko OV, Samatadze TE, Chikida NN, Zelenin AV, Friebe B, Gill BS. 2002. Genome differentiation in Aegilops.3. Evolution of the D-genome cluster. Plant Syst Evol 231:163-190.
4. Comai L. 2000. Genetic and epigenetic interactions in allopolyploid plants. Plant Mol Biol 43:387-399.
5. Chen ZJ, Ni Z. 2006. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. BioEssays 28:240-252.
6. Chen L, Li W, Liu SJ, Tao M, Long Y, Duan W, Zhang C, Xiao J, Qin QB, Luo KK, Liu JF, Liu Y. 2009. Novel genetic markers derived from the DNA fragments of sox genes. Mol Cell Probes 23:157-165.
7. Delseny M, McGrath JM, This P, Chevre AM, Quiros CF. 1990. Ribosomal RNA genes in diploid and amphiploid Brassica and related species: organization, polymorphism and evolution. Genome 33:733-744.
8. Frederiksen S, Cao H, Lomholt B, Levan G, Hallemberg C. 1997. The rat 5S rRNA bona fide gene repeat maps to chromosome 19q12-qter and the pseudogene repeat maps to 12q12. Cytogenet Cell Genet 76:101-106.
9. Feldman M, Liu B, Segal G, Abbo S, Levy AA, Vega JM. 1997. Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homologous chromosomes. Genetics 147:1138-1381.
10. Hallenberg C, Nederby-Nielsen J, Frederiksen S. 1994. Characterization of 5S rRNA genes from mouse. Gene 142:291-295.
11. Han F, Fedak G, Guo W, Liu B. 2005. Rapid and repeatable elimination of a parental genome specific DNA repeat (pGc1Rla) in newly synthesized wheat allopolyploids. Genetics 170:1239-1245.
12. Hanson RE, Islam-Faridi MN, Crance CF, Zwick MS, Czeschin DG, Wendel JF, McKnight TD, Price HJ, Stelly DM. 2000. Ty1-copia- retrotransposon behavior in a polyploid cotton. Chromosome Res 8:3-76.
13. Kashkush K, Feldman M, Levy AS. 2002. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160:1651-1659.
14. Kenton A, Parokonny AS, Gleba YY, Bennett MS. 1993. Characterisation of the Nicotiana tabacum L. genome by molecular cytogenetics. Mol Gen Genet 240:159-169.
15. Kotseruba V, Gernand D, Meister A, Houben A. 2003. Uniparental loss of ribosomal DNA in the allotetraploid grass Zingeria trichopoda (2n58). Genome 46:156-163.
16. Leah R, Frederiksen S, Engberg J, Sorensen PD. 1990. Nucleotide sequence of a mouse 5S rRNA variant gene. Nucleic Acids Res 18:7441.
17. Liu SJ, Liu Y, Zhou GJ, Zhang XJ, Luo C, Feng H, He XX, Zhu GH, Yang H. 2001. The formation of tetraploid stocks of red crucian carp common carp hybrids as an effect of interspecific hybridization. Aquaculture 192:172-186.
18. Liu SJ, Qin QB, Xiao J, Lu WT, Shen JM, Li W, Liu JF, Duan W, Zhang C, Tao M, Zhao RR, Yan JP, Liu Y. 2007. The formation of the polyploid hybrids from different subfamily fish crossings and its evolutionary significance. Genetics 176:1023-1034.
19. Martins C, Galetti Jr PM. 2001a. Organization of 5S in Leporinus fish species: two different genomic locations are characterized by distinct non-transcribed spacers (NTSs). Genome 44:903-910.
20. Martins C, Galetti Jr PM. 2001b. Two 5S rDNA arrays in neotropical fish species: is it a general rule for fishes. Genetica 111:439-446.
21. Martins C, Wasko AP, Oliveira C, Wright JM. 2000. Nucleotide sequence of 5S rDNA and localization of the ribosomal RNA genes to metaphase chromosomes of the tilapiine cichlid fish, Oreochro-mis niloticus. Hereditas 133:39-46.
22. Móran P, Martínez JL, Garcia-Vásquez E, Pendás AM. 1996. Sex linkage of 5S rDNA in rainbow trout (Oncorhynchus mykiss). Cytogenet Cell Genet 75:145-150.
23. Masterson J. 1994. Stomatal size in fossil plants-evidence for polyploidy in majority of Angiosperms. Science 264:421-424.
24. Nelson DW, Honda BM. 1985. Genes coding for 5S ribosomal RNA of the nematode Caenorhabditis elegans. Gene 38:245-251.
25. Nederby-Nielsen J, Hallenberg G, Frederiksen S, Sorensen PD, Lomholt B. 1993. Transcription of human 5S rRNA genes is influenced by an upstream DNA sequence. Nucleic Acids Res 26:3631-3636.
26. Ohno S, Wolf U, Atkin NB. 1968. Evolution from fish to mammals by gene duplication. Hereditas 59:169-187.
27. Ozkan H, Levy AA, Feldman M. 2001. Allopolyploidy induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13:1735-1747.
28. Pasolini P, Costagliola D, Rocco L, Tinti F. 2006. Molecular organization of 5S rDNA in Rajidae (Chondrichthyes): structural features and evolution of piscine 5S rRNA genes and nontran-scribed Intergenic spacers. J Mol Evol 62:564-574.
29. Pasakinskene I, Anamthawat-Jonsson K, Humphreys MW, Jones RN. 1997. Novel diploids following chromosome elimination and somatic recombination in Lolium multiflorum Festuca arundinacea hybrids. Heredity 78:464-469.
30. Pendás AM, Móran P, Freije JP, Garcia-Vásquez E. 1994. Chromosomal location and nucleotide sequence of two tandem repeats of the Atlantic salmon 5S rDNA. Cytogenet Cell Genet 67:31-36.
31. Pendás AM, Móran P, Martínez JL, Garcia-Vásquez E. 1995. Applications of 5S rDNA in Atlantic salmon, brow trout, and in Atlantic salmon brown trout hybrid identification. Mol Ecol 4:275-276.
32. Pikaard CS. 2000. The epigenetics of nucleolar dominance. Trends Genet 16:495-500.
33. Rieseberg LH. 2001. Polyploid evolution: keeping the peace at genomic reunions. Curr Biol 11:R925-R928.
34. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual, 2nd edition. Plainsview, NY: Cold Spring Harbor Laboratory Press.
35. Sadjak SL, Reed KM, Phillips RB. 1998. Intraindividual and interspecies variation in the 5S rDNA of coregonid fish. J Mol Evol 46:680-688.
36. Scheid OM, Jakovleva L, Afsar K, Maluszynska J, Paszkowski J. 1996. A change in ploidy can modify epigenetic silencing. Proc Natl Acad Sci USA 93:7114-7119.
37. Soltis PS, Soltis DE. 1991. Multiple origin of the allotetraploid Tragopogon mirus (Compositae): rDNA evidence. Syst Bot 16:407-413.
38. Southern EM. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503-517.
39. Suzuki H, Moriwaki K, Sakurai S. 1994 Sequences and evolutionary analysis of mouse 5S rDNAs. Mol Biol Evol 11:704-710.
40. Volkov RA, Borisjuk NV, Panchuk II, Schweizer D, Hemleben V. 1999. Elimination and rearrangement of parental rDNA in the allote- traploid Nicotiana tabacum. Mol Biol Evol 16:311-320.
41. Wasko AP, Martins C, Wright JM, Galetti Jr PM. 2001. Molecular organization of 5S rDNA in fishes of the genus Brycon. Genome 44:893-902.
42. Wolfe KH, Shields DC. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387:708-713.
43. Yu XJ. 1989. China freshwater fisheries chromosome. Beijing (in Chinese): Science Publishing House. p 44-75.