-
2
-
-
34249763808
-
Bacteriaorganic matter coupling and its significance for oceanic carbon cycling
-
Azam F, Smith DC, Steward GF, Hagström Å (1994) Bacteriaorganic matter coupling and its significance for oceanic carbon cycling. Microb Ecol 28:167-179
-
(1994)
Microb. Ecol.
, vol.28
, pp. 167-179
-
-
Azam, F.1
Smith, D.C.2
Steward, G.F.3
Hagström, Å.4
-
3
-
-
0030860238
-
Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
-
Borneman J, Triplett EW (1997) Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63:2647-2653
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2647-2653
-
-
Borneman, J.1
Triplett, E.W.2
-
4
-
-
28944440027
-
Marine bacterial microdiversity as revealed by internal transcribed spacer analysis
-
Brown MV, Fuhrman JA (2005) Marine bacterial microdiversity as revealed by internal transcribed spacer analysis. Aquat Microb Ecol 41:15-23
-
(2005)
Aquat. Microb. Ecol.
, vol.41
, pp. 15-23
-
-
Brown, M.V.1
Fuhrman, J.A.2
-
5
-
-
0032484910
-
Spontaneous assembly of marine dissolved organic matter into polymer gels
-
Chin WC, Orellana MV, Verdugo P (1998) Spontaneous assembly of marine dissolved organic matter into polymer gels. Nature 391:568-572
-
(1998)
Nature
, vol.391
, pp. 568-572
-
-
Chin, W.C.1
Orellana, M.V.2
Verdugo, P.3
-
6
-
-
0023789364
-
Estimating bacterial production in marine waters from the simultaneous incorporation of thymidine and leucine
-
Chin-Leo G, Kirchman DL (1988) Estimating bacterial production in marine waters from the simultaneous incorporation of thymidine and leucine. Appl Environ Microbiol 54:1934-1939
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 1934-1939
-
-
Chin-Leo, G.1
Kirchman, D.L.2
-
7
-
-
66249117185
-
Resource control of bacterial dynamics in the sea
-
Kirchman DL ed, 2nd edn, Wiley-Blackwell, London
-
Church MJ (2008) Resource control of bacterial dynamics in the sea. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. Wiley-Blackwell, London, p 335-382
-
(2008)
Microbial. Ecology of the Oceans
, pp. 335-382
-
-
Church, M.J.1
-
8
-
-
58549113144
-
Spatial distribution of bacteria and Archaea and amoA gene copy numbers throughout the water column of the eastern Mediterranean Sea
-
De Corte D, Yokokawa T, Varela MM, Agogue H, Herndl GJ (2009) Spatial distribution of bacteria and Archaea and amoA gene copy numbers throughout the water column of the eastern Mediterranean Sea. ISME J 3:147-158
-
(2009)
ISME J.
, vol.3
, pp. 147-158
-
-
De Corte, D.1
Yokokawa, T.2
Varela, M.M.3
Agogue, H.4
Herndl, G.J.5
-
9
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong EF, Preston CM, Mincer T, Rich V and others (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311:496-503
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
Preston, C.M.2
Mincer, T.3
Rich, V.4
-
10
-
-
0032075937
-
Release of dissolved amino acids by flagellates and ciliates grazing on bacteria
-
Ferrier-Pages C, Karner M, Rassoulzadegan F (1998) Release of dissolved amino acids by flagellates and ciliates grazing on bacteria. Oceanol Acta 21:485-494
-
(1998)
Oceanol. Acta
, vol.21
, pp. 485-494
-
-
Ferrier-Pages, C.1
Karner, M.2
Rassoulzadegan, F.3
-
11
-
-
66149150877
-
Microbial community structure and its functional implications
-
Fuhrman JA (2009) Microbial community structure and its functional implications. Nature 459:193-199
-
(2009)
Nature
, vol.459
, pp. 193-199
-
-
Fuhrman, J.A.1
-
12
-
-
33748353399
-
Annually reoccuring bacterial communities are predictable from ocean conditions
-
Fuhrman JA, Hewson I, Schwalbach MS, Steel JA, Brown MV, Naeem S (2006) Annually reoccuring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci Usa 103:13104-13109
-
(2006)
Proc. Natl. Acad. Sci. Usa
, vol.103
, pp. 13104-13109
-
-
Fuhrman, J.A.1
Hewson, I.2
Schwalbach, M.S.3
Steel, J.A.4
Brown, M.V.5
Naeem, S.6
-
13
-
-
45549109457
-
A latitudinal diversity gradient in planktonic marine bacteria
-
Fuhrman JA, Steele JA, Hewson I, Schwalbach MS, Brown MV, Green JL, Brown JH (2008) A latitudinal diversity gradient in planktonic marine bacteria. Proc Natl Acad Sci USA 105:7774-7778
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 7774-7778
-
-
Fuhrman, J.A.1
Steele, J.A.2
Hewson, I.3
Schwalbach, M.S.4
Brown, M.V.5
Green, J.L.6
Brown, J.H.7
-
14
-
-
0029798513
-
16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria
-
Giovannoni SJ, Rappe MS, Vergin KL, Adair NL (1996) 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria. Proc Natl Acad Sci USA 93:7979-7984
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7979-7984
-
-
Giovannoni, S.J.1
Rappe, M.S.2
Vergin, K.L.3
Adair, N.L.4
-
15
-
-
70349559205
-
Hydrostatic pressure affects physiology and community structure of marine bacteria during setting to 4000 m: An experimental approach
-
Grossart HP, Gust G (2009) Hydrostatic pressure affects physiology and community structure of marine bacteria during setting to 4000 m: an experimental approach. Mar. Ecol Prog Ser 390:97-104
-
(2009)
Mar. Ecol. Prog. Ser.
, vol.390
, pp. 97-104
-
-
Grossart, H.P.1
Gust, G.2
-
16
-
-
0037250664
-
Bacterioplankton distribution and production in the bathypelagic ocean: Directly coupled to particulate organic carbon export?
-
Hansell DA, Ducklow HW (2003) Bacterioplankton distribution and production in the bathypelagic ocean: Directly coupled to particulate organic carbon export? Limnol Oceanogr 48:150-156
-
(2003)
Limnol. Oceanogr.
, vol.48
, pp. 150-156
-
-
Hansell, D.A.1
Ducklow, H.W.2
-
17
-
-
18444408108
-
Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean
-
Herndl GJ, Reinthaler T, Teira E, van Aken H, Veth C, Pernthaler A, Pernthaler J (2005) Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean. Appl Environ Microbiol 71:2303-2309
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2303-2309
-
-
Herndl, G.J.1
Reinthaler, T.2
Teira, E.3
Van Aken, H.4
Veth, C.5
Pernthaler, A.6
Pernthaler, J.7
-
18
-
-
33744923681
-
Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition
-
Hewson I, Steele JA, Capone DG, Fuhrman JA (2006a) Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition. Limnol Oceanogr 51:1274-1283
-
(2006)
Limnol. Oceanogr.
, vol.51
, pp. 1274-1283
-
-
Hewson, I.1
Steele, J.A.2
Capone, D.G.3
Fuhrman, J.A.4
-
19
-
-
33646785416
-
Tem; poral and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters
-
Hewson I, Steele JA, Capone DG, Fuhrman JA (2006b) Tem; poral and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters. Mar. Ecol Prog Ser 311:67-77
-
(2006)
Mar. Ecol. Prog. Ser.
, vol.311
, pp. 67-77
-
-
Hewson, I.1
Steele, J.A.2
Capone, D.G.3
Fuhrman, J.A.4
-
20
-
-
0035857321
-
Fluid motion and solute distribution around sinking aggregates. I. Smallscale fluxes and heterogeneity of nutrients in the pelagic environment
-
Kiorboe T, Ploug H, Thygesen UH (2001) Fluid motion and solute distribution around sinking aggregates. I. Smallscale fluxes and heterogeneity of nutrients in the pelagic environment. Mar. Ecol Prog Ser 211:1-13
-
(2001)
Mar. Ecol. Prog. Ser.
, vol.211
, pp. 1-13
-
-
Kiorboe, T.1
Ploug, H.2
Thygesen, U.H.3
-
21
-
-
33846050063
-
-
Paul JH ed Methods in microbiology, Academic Press, New York, NY
-
Kirchman DL (2001) Measuring bacterial biomass production and growth rates from leucine incorporation in natural aquatic environments. In: Paul JH (ed) Methods in microbiology, Vol 30. Academic Press, New York, NY, p 227-237
-
(2001)
Measuring Bacterial Biomass Production and Growth Rates From Leucine Incorporation in Natural Aquatic Environments
, vol.30
, pp. 227-237
-
-
Kirchman, D.L.1
-
22
-
-
0030620505
-
Regulation of bacterial growth rates by dissolved organic carbon and temperature in the equatorial Pacific Ocean
-
Kirchman DL, Rich JH (1997) Regulation of bacterial growth rates by dissolved organic carbon and temperature in the equatorial Pacific Ocean. Microb Ecol 33:11-20
-
(1997)
Microb. Ecol.
, vol.33
, pp. 11-20
-
-
Kirchman, D.L.1
Rich, J.H.2
-
23
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt E, Goodfellow M eds, John Wiley & Sons, New York, NY
-
Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. John Wiley & Sons, New York, NY, p 115-176
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-176
-
-
Lane, D.J.1
-
24
-
-
0035814250
-
Microscale patchiness of bacterioplankton assmblage richness in seawater
-
Long RA, Azam F (2001) Microscale patchiness of bacterioplankton assmblage richness in seawater. Aquat Microb Ecol 26:103-113
-
(2001)
Aquat. Microb. Ecol.
, vol.26
, pp. 103-113
-
-
Long, R.A.1
Azam, F.2
-
25
-
-
39149124249
-
Metagenomics of the deep Mediterranean, a warm bathypelagic habitat
-
DOI 10.1371/journal.pone.0000914
-
Martín-Cuadrado AB, López-García P, Alba JC, Moreira D and others (2007) Metagenomics of the deep Mediterranean, a warm bathypelagic habit. PLoS ONE 2:e914 doi:10.1371/journal.pone.0000914 (Pubitemid 351445308)
-
(2007)
PLoS ONE
, vol.2
, Issue.9
-
-
Martin-Cuadrado, A.-B.1
Lopez-Garcia, P.2
Alba, J.-C.3
Moreira, D.4
Monticelli, L.5
Strittmatter, A.6
Gottschalk, G.7
Rodriguez-Valera, F.8
-
26
-
-
77954307145
-
Biogeochemical relationships between ultrafiltered dissolved organic matter and picoplankton activity in the eastern Mediterranean Sea
-
in press
-
Meador TB, Gogou A, Spyres G, Herndl GJ and others (in press) Biogeochemical relationships between ultrafiltered dissolved organic matter and picoplankton activity in the eastern Mediterranean Sea. Deep-Sea Res II
-
Deep-Sea Res. II
-
-
Meador, T.B.1
Gogou, A.2
Spyres, G.3
Herndl, G.J.4
-
27
-
-
53549116171
-
Immigration of prokaryotes to local environments enhances remineralization efficiency of sinking particles: A metacommunity model
-
Miki T, Yokokawa T, Nagata T, Yamamura N (2008) Immigration of prokaryotes to local environments enhances remineralization efficiency of sinking particles: a metacommunity model. Mar. Ecol Prog Ser 366:1-14
-
(2008)
Mar. Ecol. Prog. Ser.
, vol.366
, pp. 1-14
-
-
Miki, T.1
Yokokawa, T.2
Nagata, T.3
Yamamura, N.4
-
28
-
-
0032812081
-
Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
-
Moeseneder MM, Arrieta JM, Muyzer G, Winter C, Herndl GJ (1999) Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl Environ Microbiol 65:3518-3525
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3518-3525
-
-
Moeseneder, M.M.1
Arrieta, J.M.2
Muyzer, G.3
Winter, C.4
Herndl, G.J.5
-
29
-
-
0035283902
-
Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes
-
Moeseneder MM, Winter C, Arrieta JM, Herndl GJ (2001a) Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes. J Microbiol Methods 44:159-172
-
(2001)
J. Microbiol. Methods
, vol.44
, pp. 159-172
-
-
Moeseneder, M.M.1
Winter, C.2
Arrieta, J.M.3
Herndl, G.J.4
-
30
-
-
0035133741
-
Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints
-
Moeseneder MM, Winter C, Herndl GJ (2001b) Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints. Limnol Oceanogr 46:95-107
-
(2001)
Limnol. Oceanogr.
, vol.46
, pp. 95-107
-
-
Moeseneder, M.M.1
Winter, C.2
Herndl, G.J.3
-
31
-
-
12344287312
-
A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community
-
Moeseneder MM, Arrieta JM, Herndl GJ (2005) A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community. FEMS Microbiol Ecol 51:341-352
-
(2005)
FEMS Microbiol. Ecol.
, vol.51
, pp. 341-352
-
-
Moeseneder, M.M.1
Arrieta, J.M.2
Herndl, G.J.3
-
32
-
-
0034012986
-
Bacterioplankton distribution and production in deep Pacific waters: Large-scale geographic variations and possible coupling with sinking particle fluxes
-
Nagata T, Fukuda H, Fukuda R, Koike I (2000) Bacterioplankton distribution and production in deep Pacific waters: large-scale geographic variations and possible coupling with sinking particle fluxes. Limnol Oceanogr 45:426-435
-
(2000)
Limnol. Oceanogr.
, vol.45
, pp. 426-435
-
-
Nagata, T.1
Fukuda, H.2
Fukuda, R.3
Koike, I.4
-
33
-
-
33744901143
-
Prokaryotic respiration and production in the mesoand bathypelagic realm of the eastern and western North Atlantic basin
-
Reinthaler T, van Aken H, Veth C, Aristegui J and others (2006) Prokaryotic respiration and production in the mesoand bathypelagic realm of the eastern and western North Atlantic basin. Limnol Oceanogr 51:1262-1273
-
(2006)
Limnol. Oceanogr.
, vol.51
, pp. 1262-1273
-
-
Reinthaler, T.1
Van Aken, H.2
Veth, C.3
Aristegui, J.4
-
34
-
-
0033951021
-
Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
-
Riemann L, Steward GF, Azam F (2000) Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl Environ Microbiol 66:578-587
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 578-587
-
-
Riemann, L.1
Steward, G.F.2
Azam, F.3
-
36
-
-
0036273581
-
Full-depth profile (0-2000 m) of bacteria, heterotrophic nanoflagellates and ciliates in the NW Mediterranean Sea: Vertical partitioning of microbial trophic structures
-
Tanaka T, Rassoulzadegan F (2002) Full-depth profile (0-2000 m) of bacteria, heterotrophic nanoflagellates and ciliates in the NW Mediterranean Sea: vertical partitioning of microbial trophic structures. Deep-Sea Res I 49:2093-2107
-
(2002)
Deep-Sea Res. I
, vol.49
, pp. 2093-2107
-
-
Tanaka, T.1
Rassoulzadegan, F.2
-
37
-
-
1842666534
-
Vertical and seasonal variations of bacterial abundance and production in the mesopelagic layer of the NW Mediterranean Sea: Bottomup and top-down controls
-
Tanaka T, Rassoulzadegan F (2004) Vertical and seasonal variations of bacterial abundance and production in the mesopelagic layer of the NW Mediterranean Sea: bottomup and top-down controls. Deep-Sea Res I 51:531-544
-
(2004)
Deep-Sea Res. I
, vol.51
, pp. 531-544
-
-
Tanaka, T.1
Rassoulzadegan, F.2
-
38
-
-
21844467723
-
Analyzing the trophic link between the mesopelagic microbial loop and zooplankton from observed depth profiles of bacteria and protozoa
-
Tanaka T, Rassoulzadegan F, Thingstad TF (2005) Analyzing the trophic link between the mesopelagic microbial loop and zooplankton from observed depth profiles of bacteria and protozoa. Biogeosciences 2:9-13
-
(2005)
Biogeosciences
, vol.2
, pp. 9-13
-
-
Tanaka, T.1
Rassoulzadegan, F.2
Thingstad, T.F.3
-
39
-
-
0034013576
-
Depth-related cell-specific bacterial leucine incorporation rates on particles and its biogeochemical significance in the Northwest Mediterranean
-
Turley CM, Stutt ED (2000) Depth-related cell-specific bacterial leucine incorporation rates on particles and its biogeochemical significance in the Northwest Mediterranean. Limnol Oceanogr 45:419-425
-
(2000)
Limnol. Oceanogr.
, vol.45
, pp. 419-425
-
-
Turley, C.M.1
Stutt, E.D.2
-
41
-
-
44849088381
-
Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub) tropical Atlantic
-
Varela MM, van Aken HM, Herndl GJ (2008) Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub) tropical Atlantic. Environ Microbiol 10:1903-1911
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 1903-1911
-
-
Varela, M.M.1
Van Aken, H.M.2
Herndl, G.J.3
-
42
-
-
0000256879
-
Heterotrophic bacteria and the dynamics of dissolved organic material
-
Kirchman DL ed, Wiley-Liss, New York, NY
-
Williams PJleB (2000) Heterotrophic bacteria and the dynamics of dissolved organic material. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley-Liss, New York, NY, p 153-200
-
(2000)
Microbial. Ecology of the Oceans
, pp. 153-200
-
-
Williams, P.Jle.B.1
-
43
-
-
46149089912
-
Relationship of geographic distance, depth, temperature, and viruses with prokaryotic communities in the eastern tropical Atlantic Ocean
-
Winter C, Moeseneder MM, Herndl GJ, Weinbauer MG (2008) Relationship of geographic distance, depth, temperature, and viruses with prokaryotic communities in the eastern tropical Atlantic Ocean. Microb Ecol 56:383-389
-
(2008)
Microb. Ecol.
, vol.56
, pp. 383-389
-
-
Winter, C.1
Moeseneder, M.M.2
Herndl, G.J.3
Weinbauer, M.G.4
-
44
-
-
61649094707
-
Seasonal changes of bacterial and archaeal communities in the dark ocean: Evidence from the Mediterranean Sea
-
Winter C, Kerros ME, Weinbauer MG (2009) Seasonal changes of bacterial and archaeal communities in the dark ocean: evidence from the Mediterranean Sea. Limnol Oceanogr 54:160-170
-
(2009)
Limnol. Oceanogr.
, vol.54
, pp. 160-170
-
-
Winter, C.1
Kerros, M.E.2
Weinbauer, M.G.3
-
45
-
-
77749301910
-
Linking bacterial community structure to carbon fluxes in marine environments
-
Yokokawa T, Nagata T (2010) Linking bacterial community structure to carbon fluxes in marine environments. J Oceanogr 66:1-12
-
(2010)
J. Oceanogr.
, vol.66
, pp. 1-12
-
-
Yokokawa, T.1
Nagata, T.2
-
46
-
-
0034483876
-
The role of the north Aegean in triggering the recent eastern Mediterranean climatic changes
-
Zervakis V, Georgopoulos D, Drakopoulos PG (2000) The role of the north Aegean in triggering the recent eastern Mediterranean climatic changes. J Geophys Res 105(C11):26103-26116
-
(2000)
J. Geophys Res.
, vol.105
, Issue.C11
, pp. 26103-26116
-
-
Zervakis, V.1
Georgopoulos, D.2
Drakopoulos, P.G.3
|