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Volumn 38, Issue SUPPL. 2, 2010, Pages

waviCGH: A web application for the analysis and visualization of genomic copy number alterations

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; CHROMOSOME; COMPARATIVE GENOMIC HYBRIDIZATION; COMPUTER INTERFACE; COMPUTER PROGRAM; CYTOGENETICS; GENE DOSAGE; GENETIC ANALYSIS; HUMAN COMPUTER INTERACTION; INTERNET; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; ANIMAL; COPY NUMBER VARIATION; DNA MICROARRAY; GENOMICS; HUMAN; MOUSE; RAT;

EID: 77954260411     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq441     Document Type: Article
Times cited : (18)

References (34)
  • 4
    • 34347339520 scopus 로고    scopus 로고
    • Methods and strategies for analyzing copy number variation using DNA microarrays
    • Carter,N.P. (2007) Methods and strategies for analyzing copy number variation using DNA microarrays. Nat. Genet., 39, S16-S21.
    • (2007) Nat. Genet. , vol.39
    • Carter, N.P.1
  • 5
    • 2342453338 scopus 로고    scopus 로고
    • An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays
    • Zhao,X., Li,C., Paez,J.G., Chin,K., Jänne,P.A., Chen,T.H., Girard,L., Minna,J., Christiani,D., Leo,C. et al. (2004) An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays. Cancer Res., 64, 3060-3071.
    • (2004) Cancer Res. , vol.64 , pp. 3060-3071
    • Zhao, X.1    Li, C.2    Paez, J.G.3    Chin, K.4    Jänne, P.A.5    Chen, T.H.6    Girard, L.7    Minna, J.8    Christiani, D.9    Leo, C.10
  • 6
    • 56649103903 scopus 로고    scopus 로고
    • CNVDetector: locating copy number variations using array CGH data
    • Chen,P.A., Liu,H.F. and Chao,K.M. (2008) CNVDetector: locating copy number variations using array CGH data. Bioinformatics, 24, 2773-2775.
    • (2008) Bioinformatics , vol.24 , pp. 2773-2775
    • Chen, P.A.1    Liu, H.F.2    Chao, K.M.3
  • 9
    • 25444469387 scopus 로고    scopus 로고
    • Visualization-based discovery and analysis of genomic aberrations in microarray data
    • Myers,C.L., Chen,X. and Troyanskaya,O.G. (2005) Visualization-based discovery and analysis of genomic aberrations in microarray data. BMC Bioinformatics, 6, 146
    • (2005) BMC Bioinformatics , vol.6 , pp. 146
    • Myers, C.L.1    Chen, X.2    Troyanskaya, O.G.3
  • 11
    • 40349108567 scopus 로고    scopus 로고
    • ADaCGH: a parallelized web-based application and R package for the analysis of aCGH data
    • Díaz-Uriarte,R. and Rueda,O.M. (2007) ADaCGH: a parallelized web-based application and R package for the analysis of aCGH data. PLoS ONE, 2, e737.
    • (2007) PLoS ONE , vol.2
    • Díaz-Uriarte, R.1    Rueda, O.M.2
  • 12
    • 33744901128 scopus 로고    scopus 로고
    • WebaCGH: an interactive online tool for the analysis and display of array comparative genomic hybridisation data
    • Frankenberger,C., Wu,X., Harmon,J., Church,D., Gangi,L.M., Munroe,D.J. and Urzúa,U. (2006) WebaCGH: an interactive online tool for the analysis and display of array comparative genomic hybridisation data. Appl. Bioinformatics, 5, 125-130.
    • (2006) Appl. Bioinformatics , vol.5 , pp. 125-130
    • Frankenberger, C.1    Wu, X.2    Harmon, J.3    Church, D.4    Gangi, L.M.5    Munroe, D.J.6    Urzúa, U.7
  • 13
    • 19544370909 scopus 로고    scopus 로고
    • ArrayCyGHt: a web application for analysis and visualization of array-CGH data
    • Kim,S.Y., Nam,S.W., Lee,S.H., Park,W.S., Yoo,N.J., Lee,J.Y. and Chung,Y.J. (2005) ArrayCyGHt: a web application for analysis and visualization of array-CGH data. Bioinformatics, 21, 2554-2555.
    • (2005) Bioinformatics , vol.21 , pp. 2554-2555
    • Kim, S.Y.1    Nam, S.W.2    Lee, S.H.3    Park, W.S.4    Yoo, N.J.5    Lee, J.Y.6    Chung, Y.J.7
  • 14
    • 41349085816 scopus 로고    scopus 로고
    • CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms
    • Lai,W., Choudhary,V. and Park,P.J. (2008) CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms. Bioinformatics, 24, 1014-1015.
    • (2008) Bioinformatics , vol.24 , pp. 1014-1015
    • Lai, W.1    Choudhary, V.2    Park, P.J.3
  • 18
    • 33644872577 scopus 로고    scopus 로고
    • Limma: linear models for microarray data
    • Gentleman,R., Carey,V., Dudoit,S., Irizarry,R. and Huber,W. (eds), Springer, New York
    • Smyth,G.K. (2005) Limma: linear models for microarray data. In Gentleman,R., Carey,V., Dudoit,S., Irizarry,R. and Huber,W. (eds), Bioinformatics and Computational Biology Solutions using R and Bioconductor. Springer, New York, pp. 397-420.
    • (2005) Bioinformatics and Computational Biology Solutions using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 20
    • 49549085311 scopus 로고    scopus 로고
    • A fast and flexible method for the segmentation of aCGH data
    • Ben-Yaacov,E. and Eldar,Y.C. (2008) A fast and flexible method for the segmentation of aCGH data. Bioinformatics, 24, i139-i145.
    • (2008) Bioinformatics , vol.24
    • Ben-Yaacov, E.1    Eldar, Y.C.2
  • 21
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen,A.B., Venkatraman,E.S., Lucito,R. and Wigler,M. (2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics, 5, 557-572.
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 22
    • 12344259648 scopus 로고    scopus 로고
    • Analysis of array CGH data: from signal ratio to gain and loss of DNA regions
    • Hupé,P., Stransky,N., Thiery,J.P., Radvanyi,F. and Barillot,E. (2004) Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. Bioinformatics, 20, 3413-3422.
    • (2004) Bioinformatics , vol.20 , pp. 3413-3422
    • Hupé, P.1    Stransky, N.2    Thiery, J.P.3    Radvanyi, F.4    Barillot, E.5
  • 25
    • 33646163019 scopus 로고    scopus 로고
    • Biohmm: a heterogeneous hidden markov model for segmenting array cgh data
    • Marioni,J.C., Thorne,N.P. and Tavaré,S. (2006) Biohmm: a heterogeneous hidden markov model for segmenting array cgh data. Bioinformatics, 22, 1144-1146.
    • (2006) Bioinformatics , vol.22 , pp. 1144-1146
    • Marioni, J.C.1    Thorne, N.P.2    Tavaré, S.3
  • 27
    • 27944455289 scopus 로고    scopus 로고
    • A comparison study: applying segmentation to array CGH data for downstream analyses
    • Willenbrock,H. and Fridlyand,J. (2005) A comparison study: applying segmentation to array CGH data for downstream analyses. Bioinformatics, 21, 4084-4091.
    • (2005) Bioinformatics , vol.21 , pp. 4084-4091
    • Willenbrock, H.1    Fridlyand, J.2
  • 29
    • 43449100079 scopus 로고    scopus 로고
    • Comparative genome profiling across subtypes of low-grade B-cell lymphoma identifies type-specific and common aberrations that target genes with a role in B-cell neoplasia
    • Ferreira,B.I., García,J.F., Suela,J., Mollejo,M., Camacho,F.I., Carro,A., Montes,S., Piris,M.A. and Cigudosa,J.C. (2008) Comparative genome profiling across subtypes of low-grade B-cell lymphoma identifies type-specific and common aberrations that target genes with a role in B-cell neoplasia. Haematologica, 93, 670-679.
    • (2008) Haematologica , vol.93 , pp. 670-679
    • Ferreira, B.I.1    García, J.F.2    Suela, J.3    Mollejo, M.4    Camacho, F.I.5    Carro, A.6    Montes, S.7    Piris, M.A.8    Cigudosa, J.C.9
  • 30
    • 41149168760 scopus 로고    scopus 로고
    • Array CGH and gene-expression profiling reveals distinct genomic instability patterns associated with DNA repair and cell-cycle checkpoint pathways in Ewing' s sarcoma
    • Ferreira,B.I., Alonso,J., Carrillo,J., Acquadro,F., Largo,C., Suela,J., Teixeira,M.R., Cerveira,N., Molares,A., Gómez-López,G. et al. (2008) Array CGH and gene-expression profiling reveals distinct genomic instability patterns associated with DNA repair and cell-cycle checkpoint pathways in Ewing' s sarcoma. Oncogene, 27, 2084-2090.
    • (2008) Oncogene , vol.27 , pp. 2084-2090
    • Ferreira, B.I.1    Alonso, J.2    Carrillo, J.3    Acquadro, F.4    Largo, C.5    Suela, J.6    Teixeira, M.R.7    Cerveira, N.8    Molares, A.9    Gómez-López, G.10
  • 32
    • 38849092212 scopus 로고    scopus 로고
    • GEAR: genomic enrichment analysis of regional DNA copy number changes
    • Kim,T.M., Jung,Y.C., Rhyu,M.G., Jung,M.H. and Chung,Y.J. (2008) GEAR: genomic enrichment analysis of regional DNA copy number changes. Bioinformatics, 24, 420-421.
    • (2008) Bioinformatics , vol.24 , pp. 420-421
    • Kim, T.M.1    Jung, Y.C.2    Rhyu, M.G.3    Jung, M.H.4    Chung, Y.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.