GEAR: Genomic enrichment analysis of regional DNA copy number changes

Bioinformatics

Volumn 24, Issue 3, 2008, Pages 420-421

  Kim, Tae Min ^a,b   Jung, Yu Chae ^a   Rhyu, Mun Gan ^a   Jung, Myeong Ho ^b,c   Chung, Yeun Jun ^a  

^a The Catholic University of Korea   (South Korea)

^b Korea National Institute of Health   (South Korea)

^c Pusan National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME ABERRATION; COMPARATIVE GENOMIC HYBRIDIZATION; COMPUTER INTERFACE; COMPUTER PROGRAM; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETIC ALGORITHM; GENOME ANALYSIS; GENOMIC ENRICHMENT ANALYSIS OF DNA COPY NUMBER CHANGES; MOLECULAR GENETICS; PHENOTYPE; PRIORITY JOURNAL; TUMOR GENE;

ALGORITHMS; CHROMOSOME ABERRATIONS; CHROMOSOME MAPPING; DNA MUTATIONAL ANALYSIS; GENE DOSAGE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SEQUENCE ANALYSIS, DNA; SOFTWARE; VARIATION (GENETICS);

EID: 38849092212     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm582     Document Type: Article

References (7)

1. Albertson,D.G. and Pinkel,D. (M) Genomic microarrays in human genetic disease and cancer. Hum. Mol. Genet., 12, R145-R152.
2. Bilke,S. et al. (2005) Inferring a tumor progression model for nouroblastoma from genomic Jata. J. Clin. Oncol., 23, 7322-7331.
3. Curtis,R.K. et al. (2005) Pathways to the analysis of microarray data. Trends Biotechnol., 23, 429-435.
4. Kim,M.Y. et al. (2006) Recurrent genomic, alterations with impact on survival in colorectal cancer identified by genome-wide array comparative genomic hybridization. Gastroenterology, 131, 1913-1924.
5. Price,TS. et al. (2005) SW-ARRAY: A dynamic programming. solution for the identification of copyhumber changes in genomic DNA using array comparative genome hybridization data. Nucleic Acids Res., 33 3455-3464.
6. Rhodes,D.R. et al. (2004) Large-scale meta-analysis of cancer microarray data identifies common transcriptional-profiles of neoplastic transformation and progression. Proc. Natl Acad. Sci. USA 101, 9309-9314.
7. Rhodes,D.R. and, Chinnaiyan,A.M. (2005) Integrative analysis of the cancer transcriptome. Nat. Genet., 37 (Suppl.), S31-S37.