-
1
-
-
0001883517
-
-
F. Eckstein and D. M. J. Lilley, Springer-Verlag, New York, pp. 1-22
-
M. Guéron and J. L. Leroy, in Nucleic Acids and Molecular Biology, ed., F. Eckstein, and, D. M. J. Lilley,, Springer-Verlag, New York, 1992, pp. 1-22
-
(1992)
Nucleic Acids and Molecular Biology
-
-
Guéron, M.1
Leroy, J.L.2
-
2
-
-
0037335588
-
Base pair opening within B-DNA: Free energy pathways for GC and at pairs from umbrella sampling simulations
-
E. Giudice P. Varnai R. Lavery Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations Nucleic Acids Res. 2003 31 1434 1443
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1434-1443
-
-
Giudice, E.1
Varnai, P.2
Lavery, R.3
-
3
-
-
56049121435
-
Central base pair flipping and discrimination by PspGI
-
R. H. Szczepanowski M. A. Carpenter H. Czapinska M. Zaremba G. Tamulaitis V. Siksnys A. S. Bhagwat M. Bochtler Central base pair flipping and discrimination by PspGI Nucleic Acids Res. 2008 36 6109 6117
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6109-6117
-
-
Szczepanowski, R.H.1
Carpenter, M.A.2
Czapinska, H.3
Zaremba, M.4
Tamulaitis, G.5
Siksnys, V.6
Bhagwat, A.S.7
Bochtler, M.8
-
4
-
-
0001277586
-
Statistical mechanics of torque induced denaturation of DNA
-
S. Cocco R. Monasson Statistical mechanics of torque induced denaturation of DNA Phys. Rev. Lett. 1999 83 5178 5181
-
(1999)
Phys. Rev. Lett.
, vol.83
, pp. 5178-5181
-
-
Cocco, S.1
Monasson, R.2
-
6
-
-
52349096310
-
Effect of loop distortion on the stability and structural dynamics of DNA hairpin and dumbbell conjugates
-
M. McCullagh L. Zhang A. H. Karaba H. Zhu G. C. Schatz F. D. Lewis Effect of loop distortion on the stability and structural dynamics of DNA hairpin and dumbbell conjugates J. Phys. Chem. B 2008 112 11415 11421
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 11415-11421
-
-
McCullagh, M.1
Zhang, L.2
Karaba, A.H.3
Zhu, H.4
Schatz, G.C.5
Lewis, F.D.6
-
7
-
-
7744233282
-
Opening mechanism of G-T/U pairs in DNA and RNA duplexes: A combined study of imino proton exchange and molecular dynamics simulation
-
P. Varnai M. Canalia J. L. Leroy Opening mechanism of G-T/U pairs in DNA and RNA duplexes: A combined study of imino proton exchange and molecular dynamics simulation J. Am. Chem. Soc. 2004 126 14659 14667
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 14659-14667
-
-
Varnai, P.1
Canalia, M.2
Leroy, J.L.3
-
8
-
-
73149092550
-
Kinetic mechanism for the flipping and excision of 1,N-6-ethenoadenine by human alkyladenine DNA glycosylase
-
A. E. Wolfe P. J. O'Brien Kinetic mechanism for the flipping and excision of 1,N-6-ethenoadenine by human alkyladenine DNA glycosylase Biochemistry 2009 48 11357 11369
-
(2009)
Biochemistry
, vol.48
, pp. 11357-11369
-
-
Wolfe, A.E.1
O'Brien, P.J.2
-
10
-
-
41949118099
-
Perylene bisimide dimers as fluorescent "glue" for DNA and for base-mismatch detection
-
D. Baumstark H. A. Wagenknecht Perylene bisimide dimers as fluorescent "Glue" for DNA and for base-mismatch detection Angew. Chem., Int. Ed. 2008 47 2612 2614
-
(2008)
Angew. Chem., Int. Ed.
, vol.47
, pp. 2612-2614
-
-
Baumstark, D.1
Wagenknecht, H.A.2
-
11
-
-
33749001425
-
Perylene-3,4:9,10-tetracarboxylic acid bisimide dye as an artificial DNA base surrogate
-
C. Wagner H. A. Wagenknecht Perylene-3,4:9,10-tetracarboxylic acid bisimide dye as an artificial DNA base surrogate Org. Lett. 2006 8 4191 4194
-
(2006)
Org. Lett.
, vol.8
, pp. 4191-4194
-
-
Wagner, C.1
Wagenknecht, H.A.2
-
13
-
-
84986437005
-
MacroModel - An integrated software system for modeling organic and bioorganic molecules using molecular mechanics
-
F. Mohamadi N. G. J. Richard W. C. Guida R. Liskamp M. Lipton C. Caufield G. Chang T. Hendrickson W. C. Still MacroModel - an integrated software system for modeling organic and bioorganic molecules using molecular mechanics J. Comput. Chem. 1990 11 440 467
-
(1990)
J. Comput. Chem.
, vol.11
, pp. 440-467
-
-
Mohamadi, F.1
Richard, N.G.J.2
Guida, W.C.3
Liskamp, R.4
Lipton, M.5
Caufield, C.6
Chang, G.7
Hendrickson, T.8
Still, W.C.9
-
14
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
W. D. Cornell P. Cieplak C. I. Bayly I. R. Gould K. M. Merz D. M. Ferguson D. C. Spellmeyer T. Fox J. W. Caldwell P. A. Kollman A second generation force field for the simulation of proteins, nucleic acids, and organic molecules J. Am. Chem. Soc. 1995 117 5179 5197
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
15
-
-
69949155113
-
Hydrophobic dimerization and thermal dissociation of perylenediimide- linked DNA hairpins
-
M. Hariharan Y. Zheng H. Long T. A. Zeidan G. C. Schatz J. Vura-Weis M. R. Wasielewski X. B. Zuo D. M. Tiede F. D. Lewis Hydrophobic dimerization and thermal dissociation of perylenediimide-linked DNA hairpins J. Am. Chem. Soc. 2009 131 5920 5929
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 5920-5929
-
-
Hariharan, M.1
Zheng, Y.2
Long, H.3
Zeidan, T.A.4
Schatz, G.C.5
Vura-Weis, J.6
Wasielewski, M.R.7
Zuo, X.B.8
Tiede, D.M.9
Lewis, F.D.10
-
16
-
-
46849093609
-
Excited singlet states of covalently bound, cofacial dimers and trimers of perylene-3,4:9,10-bis(carboximide)s
-
J. A. Giaimo J. V. Lockard L. E. Sinks A. M. Scott T. M. Wilson M. R. Wasielewski Excited singlet states of covalently bound, cofacial dimers and trimers of perylene-3,4:9,10-bis(carboximide)s J. Phys. Chem. A 2008 112 2322 2330
-
(2008)
J. Phys. Chem. A
, vol.112
, pp. 2322-2330
-
-
Giaimo, J.A.1
Lockard, J.V.2
Sinks, L.E.3
Scott, A.M.4
Wilson, T.M.5
Wasielewski, M.R.6
-
18
-
-
0003992382
-
-
N. Berova, K. Nakanishi and R. W. Woody, Wiley-VCH, New York
-
N. Berova and K. Nakanishi, in Circular Dichroism, ed., N. Berova,,, K. Nakanishi, and, R. W. Woody,, Wiley-VCH, New York, 2000
-
(2000)
Circular Dichroism
-
-
Berova, N.1
Nakanishi, K.2
-
19
-
-
53849099616
-
Fluorescent hydrophobic zippers inside duplex DNA: Interstrand stacking of perylene-3,4:9,10-tetracarboxylic acid bisimides as artificial DNA base dyes
-
D. Baumstark H. A. Wagenknecht Fluorescent hydrophobic zippers inside duplex DNA: Interstrand stacking of perylene-3,4:9,10-tetracarboxylic acid bisimides as artificial DNA base dyes Chem.-Eur. J. 2008 14 6640 6645
-
(2008)
Chem.-Eur. J.
, vol.14
, pp. 6640-6645
-
-
Baumstark, D.1
Wagenknecht, H.A.2
-
20
-
-
75649100139
-
Extreme sensitivity of circular dichroism to long-range excitonic couplings in helical supramolecular assemblies
-
L. van Dijk P. A. Bobbert F. C. Spano Extreme sensitivity of circular dichroism to long-range excitonic couplings in helical supramolecular assemblies J. Phys. Chem. B 2010 114 817 825
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 817-825
-
-
Van Dijk, L.1
Bobbert, P.A.2
Spano, F.C.3
-
21
-
-
34250854007
-
Beyond exciton theory: A time-dependent DFT and Franck-Condon study of perylene diimide and its chromophoric dimer
-
A. E. Clark C. Qin A. D. Q. Li Beyond exciton theory: A time-dependent DFT and Franck-Condon study of perylene diimide and its chromophoric dimer J. Am. Chem. Soc. 2007 129 7586 7595
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 7586-7595
-
-
Clark, A.E.1
Qin, C.2
Li, A.D.Q.3
-
22
-
-
33748925361
-
On the geometry dependence of molecular dimer spectra with an application to aggregates of perylene bisimide
-
J. Seibt P. Marquetand V. Engel Z. Chen V. Dehm F. Würthner On the geometry dependence of molecular dimer spectra with an application to aggregates of perylene bisimide Chem. Phys. 2006 328 354 362
-
(2006)
Chem. Phys.
, vol.328
, pp. 354-362
-
-
Seibt, J.1
Marquetand, P.2
Engel, V.3
Chen, Z.4
Dehm, V.5
Würthner, F.6
-
23
-
-
72449145852
-
Nature of low-lying excited states in H-aggregated perylene bisimide dyes: Results of TD-LRC-DFT and the mixed exciton model
-
F. Pan F. Gao W. Z. Liang Y. Zhao Nature of low-lying excited states in H-aggregated perylene bisimide dyes: results of TD-LRC-DFT and the mixed exciton model J. Phys. Chem. B 2009 113 14581 14587
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 14581-14587
-
-
Pan, F.1
Gao, F.2
Liang, W.Z.3
Zhao, Y.4
-
25
-
-
65649154623
-
Excited state, charge transfer and spin dynamics in DNA hairpin conjugates with perylenediimide hairpin linkers
-
R. Carmieli T. A. Zeidan R. F. Kelley Q. Mi F. D. Lewis M. R. Wasielewski Excited state, charge transfer and spin dynamics in DNA hairpin conjugates with perylenediimide hairpin linkers J. Phys. Chem. A 2009 113 4691 4700
-
(2009)
J. Phys. Chem. A
, vol.113
, pp. 4691-4700
-
-
Carmieli, R.1
Zeidan, T.A.2
Kelley, R.F.3
Mi, Q.4
Lewis, F.D.5
Wasielewski, M.R.6
-
26
-
-
57149091614
-
Exciton trapping in π-conjugated materials: A quantum-chemistry-based protocol applied to perylene bisimide dye aggregates
-
R. F. Fink J. Seibt V. Engel M. Renz M. Kaupp S. Lochbrunner H. M. Zhao J. Pfister F. Würthner B. Engels Exciton trapping in π-conjugated materials: A quantum-chemistry-based protocol applied to perylene bisimide dye aggregates J. Am. Chem. Soc. 2008 130 12858 12859
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 12858-12859
-
-
Fink, R.F.1
Seibt, J.2
Engel, V.3
Renz, M.4
Kaupp, M.5
Lochbrunner, S.6
Zhao, H.M.7
Pfister, J.8
Würthner, F.9
Engels, B.10
-
27
-
-
44449093137
-
Architecturally diverse nanostructured foldamers reveal insightful photoinduced single-molecule dynamics
-
J. J. Han A. D. Shaller W. Wang A. D. Q. Li Architecturally diverse nanostructured foldamers reveal insightful photoinduced single-molecule dynamics J. Am. Chem. Soc. 2008 130 6974 6982
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 6974-6982
-
-
Han, J.J.1
Shaller, A.D.2
Wang, W.3
Li, A.D.Q.4
-
28
-
-
0038293131
-
Alternating DNA and π-conjugated sequences. Thermophilic foldable polymers
-
W. Wang W. Wan H. H. Zhou S. Q. Niu A. D. Q. Li Alternating DNA and π-conjugated sequences. Thermophilic foldable polymers J. Am. Chem. Soc. 2003 125 5248 5249
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 5248-5249
-
-
Wang, W.1
Wan, W.2
Zhou, H.H.3
Niu, S.Q.4
Li, A.D.Q.5
-
29
-
-
0142040718
-
Stepwise evolution of the structure and electronic properties of DNA
-
F. D. Lewis X. Y. Liu Y. S. Wu X. B. Zuo Stepwise evolution of the structure and electronic properties of DNA J. Am. Chem. Soc. 2003 125 12729 12731
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 12729-12731
-
-
Lewis, F.D.1
Liu, X.Y.2
Wu, Y.S.3
Zuo, X.B.4
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