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Volumn 45, Issue 3, 2010, Pages 131-137

Influence of bacterial-feeding nematodes on nitrification and the ammonia-oxidizing bacteria (AOB) community composition

Author keywords

AOB community composition; Inorganic nitrogen; Nematodes; Nitrification; PCR DGGE

Indexed keywords

BACTERIA (MICROORGANISMS); NEMATODA; NITROSOMONADALES; NITROSOMONAS; NITROSOMONAS SP.; NITROSOSPIRA; NITROSOSPIRA SP.;

EID: 77954145290     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2010.03.011     Document Type: Article
Times cited : (68)

References (41)
  • 1
    • 0000384262 scopus 로고
    • Quantities of plant nutrients in the microbial biomass of selected soils
    • Anderson R.V., Cole C.V., Coleman D.C. Quantities of plant nutrients in the microbial biomass of selected soils. Soil Sci. 1980, 130:211-216.
    • (1980) Soil Sci. , vol.130 , pp. 211-216
    • Anderson, R.V.1    Cole, C.V.2    Coleman, D.C.3
  • 2
    • 0036840895 scopus 로고    scopus 로고
    • 2O release and on the community structure of ammonia oxidizers and denitrifiers
    • 2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl. Environ. Microbiol. 2002, 68:5685-5692.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5685-5692
    • Avrahami, S.1    Conrad, R.2    Braker, G.3
  • 3
    • 67949103702 scopus 로고    scopus 로고
    • Functional GacS in Pseudomonas DSS73 prevents digestion by Caenorhabditis elegans and protects the nematode from killer flagellates
    • Bjørnlund L., Rønn R., Péchy-Tarr M., Maurhofer M., Keel C., Nybroe O. Functional GacS in Pseudomonas DSS73 prevents digestion by Caenorhabditis elegans and protects the nematode from killer flagellates. ISME J. 2009, 3:770-779.
    • (2009) ISME J. , vol.3 , pp. 770-779
    • Bjørnlund, L.1    Rønn, R.2    Péchy-Tarr, M.3    Maurhofer, M.4    Keel, C.5    Nybroe, O.6
  • 4
    • 0037173750 scopus 로고    scopus 로고
    • Influence of oxygen partial pressure and salinity on the community composition of ammonia-oxidizing bacteria in the Schelde estuary
    • Bollmann A., Laanbroek H.J. Influence of oxygen partial pressure and salinity on the community composition of ammonia-oxidizing bacteria in the Schelde estuary. Aquat. Microb. Ecol. 2002, 28:239-247.
    • (2002) Aquat. Microb. Ecol. , vol.28 , pp. 239-247
    • Bollmann, A.1    Laanbroek, H.J.2
  • 5
    • 0028159476 scopus 로고
    • Short-term and long-term effects of bacterivorous nematodes and nematophagous fungi on carbon and nitrogen mineralization in microcosms
    • Bouwman L.A., Bloem J., van den Boogert P.H.J.F., Bremer F., Hoenderboom G.H.J., de Ruiter P.C. Short-term and long-term effects of bacterivorous nematodes and nematophagous fungi on carbon and nitrogen mineralization in microcosms. Biol. Fertil. Soils 1994, 17:249-256.
    • (1994) Biol. Fertil. Soils , vol.17 , pp. 249-256
    • Bouwman, L.A.1    Bloem, J.2    van den Boogert, P.H.J.F.3    Bremer, F.4    Hoenderboom, G.H.J.5    de Ruiter, P.C.6
  • 6
    • 84994532805 scopus 로고
    • Inorganic forms of nitrogen. In: Black C.A., Evans D.D., White J.L., Ensminger L.E., Clark F.E. (Eds.), Methods of Soil Analysis. Madison, WI, Part 2,
    • Bremner J., 1965. Inorganic forms of nitrogen. In: Black C.A., Evans D.D., White J.L., Ensminger L.E., Clark F.E. (Eds.), Methods of Soil Analysis. Madison, WI, Part 2, pp. 1179-1237.
    • (1965) , pp. 1179-1237
    • Bremner, J.1
  • 7
    • 0036241974 scopus 로고    scopus 로고
    • Temperature and moisture effects on nitrification rates in tropical rain forest soils
    • Breuer L.R., Kiese, Butterbach-Bahl K. Temperature and moisture effects on nitrification rates in tropical rain forest soils. Soil Sci. Soc. Am. J. 2002, 66:834-844.
    • (2002) Soil Sci. Soc. Am. J. , vol.66 , pp. 834-844
    • Breuer, L.R.1    Kiese2    Butterbach-Bahl, K.3
  • 8
    • 0022224840 scopus 로고
    • Chloroform fumigation and the release of soil nitrogen: a rapid direct extraction method to measure microbial biomass nitrogen in soil
    • Brookes P.C., Landman A., Pruden G., Jenkinson D.S. Chloroform fumigation and the release of soil nitrogen: a rapid direct extraction method to measure microbial biomass nitrogen in soil. Soil Biol. Biochem. 1985, 17:837-842.
    • (1985) Soil Biol. Biochem. , vol.17 , pp. 837-842
    • Brookes, P.C.1    Landman, A.2    Pruden, G.3    Jenkinson, D.S.4
  • 9
    • 0035656733 scopus 로고    scopus 로고
    • Identification of bacteria responsible for ammonia oxidation in freshwater aquaria
    • Burrell P.C., Phalen C.M., Hovanec T.A. Identification of bacteria responsible for ammonia oxidation in freshwater aquaria. Appl. Environ. Microbiol. 2001, 67:5791-5800.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5791-5800
    • Burrell, P.C.1    Phalen, C.M.2    Hovanec, T.A.3
  • 10
    • 47549118669 scopus 로고    scopus 로고
    • Short-term population dynamics of ammonia oxidizing bacteria in an agricultural soil
    • Cavagnaro T.R., Jackson L.E., Hristova K., Scow K.M. Short-term population dynamics of ammonia oxidizing bacteria in an agricultural soil. Appl. Soil Ecol. 2008, 40:13-18.
    • (2008) Appl. Soil Ecol. , vol.40 , pp. 13-18
    • Cavagnaro, T.R.1    Jackson, L.E.2    Hristova, K.3    Scow, K.M.4
  • 12
    • 0002370028 scopus 로고
    • Ammonification and nitrification of nitrogen as influenced by soil pH and previous treatments
    • Dancer W.S., Peterson L.A. Ammonification and nitrification of nitrogen as influenced by soil pH and previous treatments. Soil Sci. Soc. Am. J. 1973, 37:67-69.
    • (1973) Soil Sci. Soc. Am. J. , vol.37 , pp. 67-69
    • Dancer, W.S.1    Peterson, L.A.2
  • 13
    • 1042302221 scopus 로고    scopus 로고
    • Influence of bacterial-feeding nematodes (Cephalobidae) on soil microbial communities during maize growth
    • Djigal D., Brauman A., Diop T.A., Chotte J.L., Villenave C. Influence of bacterial-feeding nematodes (Cephalobidae) on soil microbial communities during maize growth. Soil Biol. Biochem. 2004, 36:323-331.
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 323-331
    • Djigal, D.1    Brauman, A.2    Diop, T.A.3    Chotte, J.L.4    Villenave, C.5
  • 14
    • 0031762442 scopus 로고    scopus 로고
    • Nitrogen mineralization by bacterial-feeding nematodes: verification and measurement
    • Ferris H., Venette R.C., Meumen V.D., Lau S.S. Nitrogen mineralization by bacterial-feeding nematodes: verification and measurement. Plant Soil 1998, 203:159-171.
    • (1998) Plant Soil , vol.203 , pp. 159-171
    • Ferris, H.1    Venette, R.C.2    Meumen, V.D.3    Lau, S.S.4
  • 15
    • 27444439198 scopus 로고    scopus 로고
    • Does the positive feedback effect of nematodes on the biomass and activity of their bacteria prey vary with nematode species and population size?
    • Fu S.L., Ferris H., Brown D., Plant R. Does the positive feedback effect of nematodes on the biomass and activity of their bacteria prey vary with nematode species and population size?. Soil Biol. Biochem. 2005, 37:1979-1987.
    • (2005) Soil Biol. Biochem. , vol.37 , pp. 1979-1987
    • Fu, S.L.1    Ferris, H.2    Brown, D.3    Plant, R.4
  • 16
    • 0024943503 scopus 로고
    • Enhanced nitrification in the presence of bacteriophagous protozoa
    • Griffiths B.S. Enhanced nitrification in the presence of bacteriophagous protozoa. Soil Biol. Biochem. 1989, 21:1045-1051.
    • (1989) Soil Biol. Biochem. , vol.21 , pp. 1045-1051
    • Griffiths, B.S.1
  • 17
    • 0032702142 scopus 로고    scopus 로고
    • Changes in soil microbial community structure in the presence of microbial-feeding nematodes and protozoa
    • Griffiths B.S., Bonkowski M., Dobson G., Caul S. Changes in soil microbial community structure in the presence of microbial-feeding nematodes and protozoa. Pedobiologia 1999, 43:297-304.
    • (1999) Pedobiologia , vol.43 , pp. 297-304
    • Griffiths, B.S.1    Bonkowski, M.2    Dobson, G.3    Caul, S.4
  • 18
    • 0028160021 scopus 로고
    • Nematodes as indicators of enhanced microbiological activity in a Scottish organic farming system
    • Griffiths B.S., Ritz K., Wheatley R.E. Nematodes as indicators of enhanced microbiological activity in a Scottish organic farming system. Soil Use Manage. 1994, 10:20-24.
    • (1994) Soil Use Manage. , vol.10 , pp. 20-24
    • Griffiths, B.S.1    Ritz, K.2    Wheatley, R.E.3
  • 20
    • 27844550242 scopus 로고    scopus 로고
    • Soil nematodes mediate positive interactions between legume plants and rhizobium bacteria
    • Horiuchi J., Prithiviraj B., Bais H.P., Kimball B.A., Vivanco J.M. Soil nematodes mediate positive interactions between legume plants and rhizobium bacteria. Planta 2005, 222:848-857.
    • (2005) Planta , vol.222 , pp. 848-857
    • Horiuchi, J.1    Prithiviraj, B.2    Bais, H.P.3    Kimball, B.A.4    Vivanco, J.M.5
  • 21
    • 0000469530 scopus 로고
    • Interactions of bacteria, fungi, and their nematode grazers: effects on nutrient cycling and plant growth
    • Ingham R.E., Trofymow J.A., Ingham E.R., Coleman D.C. Interactions of bacteria, fungi, and their nematode grazers: effects on nutrient cycling and plant growth. Ecol. Monogr. 1985, 55:119-140.
    • (1985) Ecol. Monogr. , vol.55 , pp. 119-140
    • Ingham, R.E.1    Trofymow, J.A.2    Ingham, E.R.3    Coleman, D.C.4
  • 23
    • 0034868585 scopus 로고    scopus 로고
    • Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species
    • Koops H.P., Pommerening-Röser A. Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species. FEMS Microbiol. Ecol. 2001, 37:1-9.
    • (2001) FEMS Microbiol. Ecol. , vol.37 , pp. 1-9
    • Koops, H.P.1    Pommerening-Röser, A.2
  • 24
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk G.A., Stephen J.R., De Boer W., Prosser J.I., Embley T.M., Woldendorp J.W. Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 1997, 63:1489-1497.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    De Boer, W.3    Prosser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 25
    • 0034548634 scopus 로고    scopus 로고
    • Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands
    • Kowalchuk G.A., Stienstra A.W., Heilig G.H., Stephen J.R., Woldendorp J.W. Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands. Environ. Microbiol. 2000, 2:99-110.
    • (2000) Environ. Microbiol. , vol.2 , pp. 99-110
    • Kowalchuk, G.A.1    Stienstra, A.W.2    Heilig, G.H.3    Stephen, J.R.4    Woldendorp, J.W.5
  • 26
    • 24944576652 scopus 로고    scopus 로고
    • Communities of ammonia-oxidizing bacteria in activated sludge of various sewage treatment plants in Tokyo
    • Limpiyakorn T., Shinohara Y., Kurisu F., Yagi O. Communities of ammonia-oxidizing bacteria in activated sludge of various sewage treatment plants in Tokyo. FEMS Microbiol. Ecol. 2005, 54:205-217.
    • (2005) FEMS Microbiol. Ecol. , vol.54 , pp. 205-217
    • Limpiyakorn, T.1    Shinohara, Y.2    Kurisu, F.3    Yagi, O.4
  • 27
    • 77954144768 scopus 로고    scopus 로고
    • Effects of inoculating bacterivorous nematodes on nitrogen nitrification of red soil. Doctoral Dissertation. Nanjing Agriculture University,
    • Liu, Y., 2008. Effects of inoculating bacterivorous nematodes on nitrogen nitrification of red soil. Doctoral Dissertation. Nanjing Agriculture University, pp. 34-35.
    • (2008) , pp. 34-35
    • Liu, Y.1
  • 28
    • 0033824280 scopus 로고    scopus 로고
    • Effects of increased nitrogen deposition on soil nematodes in alpine tundra soils
    • Lokupitiya E., Stanton N.L., Seville R.S., Snider J.R. Effects of increased nitrogen deposition on soil nematodes in alpine tundra soils. Pedobiologia 2000, 44:591-608.
    • (2000) Pedobiologia , vol.44 , pp. 591-608
    • Lokupitiya, E.1    Stanton, N.L.2    Seville, R.S.3    Snider, J.R.4
  • 29
    • 33745996958 scopus 로고    scopus 로고
    • Bacterial-feeding nematodes enhance root growth of tomato seedlings
    • Mao X.F., Feng H., Griffiths B.S., Li H.X. Bacterial-feeding nematodes enhance root growth of tomato seedlings. Soil Biol. Biochem. 2006, 38:1615-1622.
    • (2006) Soil Biol. Biochem. , vol.38 , pp. 1615-1622
    • Mao, X.F.1    Feng, H.2    Griffiths, B.S.3    Li, H.X.4
  • 30
    • 0016671427 scopus 로고
    • Length of incubation for enumerating nitrifying bacteria present in various environments
    • Matulewich V.A., Strom P.F., Finstein M.S. Length of incubation for enumerating nitrifying bacteria present in various environments. Appl. Microbiol. 1975, 29:265-268.
    • (1975) Appl. Microbiol. , vol.29 , pp. 265-268
    • Matulewich, V.A.1    Strom, P.F.2    Finstein, M.S.3
  • 31
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., De Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 32
    • 0036242855 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
    • Nicolaisen M.H., Ramsing N.B. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Methods 2002, 50:189-203.
    • (2002) J. Microbiol. Methods , vol.50 , pp. 189-203
    • Nicolaisen, M.H.1    Ramsing, N.B.2
  • 34
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe J.H., Witzel K.P., Liesack W. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 1997, 63:4704-4712.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4704-4712
    • Rotthauwe, J.H.1    Witzel, K.P.2    Liesack, W.3
  • 35
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 36
    • 0001588183 scopus 로고
    • Modifications of the elutriation method for extracting nematodes from soil
    • Seinhorst J.W. Modifications of the elutriation method for extracting nematodes from soil. Nematologica 1962, 8:117-128.
    • (1962) Nematologica , vol.8 , pp. 117-128
    • Seinhorst, J.W.1
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 38
    • 0027337259 scopus 로고
    • Effects of grazing by flagellates on competition for ammonium between nitrifying and heterotrophic bacteria in soil columns
    • Verhagen F.J.M., Duyts H., Laanbroek H.J. Effects of grazing by flagellates on competition for ammonium between nitrifying and heterotrophic bacteria in soil columns. Appl. Environ. Microbiol. 1993, 59:2099-2106.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2099-2106
    • Verhagen, F.J.M.1    Duyts, H.2    Laanbroek, H.J.3
  • 39
    • 0141503504 scopus 로고    scopus 로고
    • Changes in nematode communities after manuring in millet fields in Senegal
    • Villenave C., Bongers T., Ekschmitt K., Fernandes P., Oliver R. Changes in nematode communities after manuring in millet fields in Senegal. Nematology 2003, 5(3):351-358.
    • (2003) Nematology , vol.5 , Issue.3 , pp. 351-358
    • Villenave, C.1    Bongers, T.2    Ekschmitt, K.3    Fernandes, P.4    Oliver, R.5
  • 40
    • 5644237999 scopus 로고    scopus 로고
    • Interactions between nematodes and microbial communities in a tropical soil following manipulation of the soil food web
    • Villenave C., Ekschmitt K., Nazaret S., Bongers T. Interactions between nematodes and microbial communities in a tropical soil following manipulation of the soil food web. Soil Biol. Biochem. 2004, 36:2033-2043.
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 2033-2043
    • Villenave, C.1    Ekschmitt, K.2    Nazaret, S.3    Bongers, T.4
  • 41
    • 0003740557 scopus 로고
    • Methods of soil analysis. Part 2: microbiological and biochemical properties
    • Soil Science Society of America, Madison,
    • Weaver R.W., Angle S., Bottomley P. Methods of soil analysis. Part 2: microbiological and biochemical properties. SSSA Book Series 5 1994, Soil Science Society of America, Madison, 1121 pp.
    • (1994) SSSA Book Series 5 , pp. 1121
    • Weaver, R.W.1    Angle, S.2    Bottomley, P.3


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