Microgeographic genetic isolation in chub (Cyprinidae: Squalius cephalus) population of the Durance River: Estimating fragmentation by dams

Ecology of Freshwater Fish

Volumn 19, Issue 2, 2010, Pages 267-278

  Dehais, C ^a   Eudeline, R ^a,b   Berrebi, P ^b   Argillier, C ^a  

^a CEMAGREF   (France)

^b INSTITUT DES SCIENCES DE L EVOLUTION   (France)

Author keywords

Connectivity; Heterozygosity; Microsatellites; Upstream downstream structure; Weirs

Indexed keywords

CYPRINIDAE; CYPRINIFORMES; LEUCISCUS CEPHALUS;

EID: 77954127557     PISSN: 09066691     EISSN: 16000633     Source Type: Journal    
DOI: 10.1111/j.1600-0633.2010.00411.x     Document Type: Article

References (65)

1. Arnaud-Haond S, Teixeira S, Massa SI, Billot C, Saenger P, Coupland G, Duarte CM, Serrao EA. Genetic structure at range edge: low diversity and high inbreeding in Southeast Asian mangrove (Avicennia marina) populations. Molecular Ecology 2006, 15:3515-3525.
2. Bainbridge R. The speed of swimming of fish as related to size and to the frequency and amplitude of the tail beat. Journal of Experimental Biology 1958, 35:109-133.
3. Balloux F, Lugon-Moulin N. The estimation of population differentiation with microsatellite markers. Molecular Ecology 2002, 11:155-165.
4. Belkhir K. GENETIX 4.0, WindowsTM software for population genetics 1997, Montpellier, CNRS UPR 9060, Université de Montpellier II, Laboratoire Génome et Population
5. Bouchard P, Chappaz R, Cavalli L, Brun G. Influence of environmental variables on the growth of Leuciscus cephalus (L.) in the River Durance, south-east France. Annales de Limnologie 1998, 34:193-200.
6. Bruslé J, Quignard JP. Biologie des poissons d'eau douce européens 2001, Paris, Lavoisier Tec & Doc., pp
7. Carlsson J, Olsen KH, Nilsson J, Overli O, Stabell OB. Microsatellites reveal fine-scale genetic structure in stream-living brown trout. Journal of Fish Biology 1999, 55:1290523. 303
8. Castric V, Bernatchez L, Belkhir K, Bonhomme F. Heterozygote deficiencies in small lacustrine populations of brook charr Salvelinus fontinalis Mitchill (Pisces, Salmonidae): a test of alternative hypotheses. Heredity 2002, 89:27-35.
9. Chapuis MP, Estoup A. Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution 2007, 24:621-631.
10. Coulon A, Cosson JF, Angibault JM, Cargnelutti B, Galan M, Morellet N, Petit E, Aulagnier S, Hewison AJM. Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach. Molecular Ecology 2004, 13:2841-2850.
11. Croze O. Radio-tracking: a useful tool for the Aulne Atlantic salmon rehabilitation program. Fifth Conference on Fish Telemetry-Aquatic Telemetry: advances and applications 2005, 13-24. Spedicato MTLembo GMarmulla G. eds, Rome, FAO/COISPA, pp
12. Dempster AP, Laird NM, Rubin DB. Maximum likelihood from incomplete data via the EM algorithm. Journal of the Royal Statistical Society. Series B (Methodological) 1977, 39:1-38.
13. Dunham JB, Vinyard GL, Rieman BE. Habitat fragmentation and extinction risk of Lahontan cutthroat trout. North American Journal of Fisheries Management 1997, 17:1126-1133.
14. Ellstrand NC, Elam DR. Population genetic consequences of small population size: implications for plant conservation. Annual Review of Ecology and Systematics 1993, 24:217-242.
15. Estoup A, Largiader CR, Perrot E, Chourrout D. Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Molecular Marine Biology and Biotechnology 1996, 5:295-298.
16. Fagan WF. Connectivity, fragmentation, and extinction risk in dendritic metapopulations. Ecology 2002, 83:3243-3249.
17. Fahrig L. Effects of habitat fragmentation on biodiversity. Annual Review of Ecology, Evolution, and Systematics 2003, 34:487-515.
18. Frankham R. Relationship of genetic variation to population size in wildlife. Conservation Biology 1996, 10:1500-1508.
19. Fredrich F, Ohmann S, Curio B, Kirschbaum F. Spawning migrations of the chub in the River Spree, Germany. Journal of Fish Biology 2003, 63:710-723.
20. Hanfling B, Hellemans B, Volckaert FAM, Carvalho GR. Late glacial history of the cold-adapted freshwater fish Cottus gobio, revealed by microsatellites. Molecular Ecology 2002, 11:1717-1729.
21. Hanski I, Gilpin M. Metapopulation dynamics: brief history and conceptual domain. Biological Journal of the Linnean Society 1991, 42:3-16.
22. Hitt NP, Angermeier PL. Effects of adjacent streams on local fish assemblage structure in western Virginia: implications for biomonitoring. American Fisheries Society Symposium 2006, 48:75-86.
23. Keith P, Allardi J. Atlas des poissons d'eau douce de France. Patrimoines Naturels 2001, Paris, Muséum National d'Histoire Naturelle, pp
24. Kimura M. Stepping-stone model of population. Annual Report of the National Institute of Genetics 1953, 3:62-63.
25. Kimura M, Weiss GH. The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 1964, 49:561-576.
26. Knaepkens G, Verheyen E, Galbusera P, Eens M. The use of genetic tools for the evaluation of a potential migration barrier for the bullhead. Journal of Fish Biology 2004, 64:1737-1744.
27. Lacy RC. Loss of genetic diversity from managed populations: interacting effects of drift, mutation, immigration, selection, and population subdivision. Conservation Biology 1987, 1:143-158.
28. Lande R. Risks of population extinction from demographic and environmental stochasticity and random catastrophes. American Naturalist 1993, 142:911-927.
29. Larno V, Launey S, Devaux A, Laroche J. Isolation and characterization of microsatellite loci from chub Leuciscus cephalus (Pisces: Cyprinidae). Molecular Ecology 2005, 5:752-754.
30. Laroche J, Durand JD, Bouvet Y, Guinand B, Brohon B. Genetic structure and differentiation among populations of two cyprinids, Leuciscus cephalus and Rutilus rutilus, in a large European river. Canadian Journal of Fisheries and Aquatic Sciences 1999, 56:1659-1667.
31. Levins R. Extinction. Some mathematical problems in biology 1970, 76-107. Gustenhaver M. ed, Providence, Rhode Island, American Mathemical Society, pp
32. Lucas MC, Frear PA. Effects of a flow-gauging weir on the migratory behavior of adult barbel, a riverine cyprinid. Journal of Fish Biology 1997, 50:382-396.
33. Lynch M, Conery J, Burger R. Mutation accumulation and the extinction of small populations. American Naturalist 1995, 146:489-518.
34. Madéore-Le Pichon C. Une approche "paysage aquatique" pour une meilleure connaissance du fonctionnement des ecosystèmes fluviaux et l'amélioration de la conservation des peuplements de poissons 2006, Ph.D thesis, Paris, Université Pierre et Marie Curie -Paris VI, pp
35. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer research 1967, 27:209-220.
36. Mathieu E, Autem M, Roux M, Bonhomme F. Epreuve de validation de l'analyse de structures génétiques multivariées: comment tester l'équilibre panmictique? revue de statistiques appliquées 1990, 38:46-66.
37. McKeown BA. Fish migration 1984, London, Croom Helm Ltd
38. Meldgaard T, Nielsen EE, Loeschcke V. Fragmentation by weirs in a riverine system: a study of genetic variation in time and space among populations of European grayling (Thymallus thymallus) in a Danish river system. Conservation Genetics 2003, 4:735-747.
39. Miranda R, Oscoz J, Leunda PM, Garcia-Fresca C, Escala MC. Effects of weir construction on fish population structure in the River Erro (North of Spain). Annales De Limnologie-International Journal of Limnology 2005, 41:7-13.
40. Morita K, Yamamoto S. Effects of habitat fragmentation by damming on the persistence of stream-dwelling charr populations. Conservation Biology 2002, 16:1318-1323.
41. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
42. Neraas LP, Spruell P. Fragmentation of riverine systems: the genetic effects of dams on bull trout (Salvelinus confluentus) in the Clark Fork River system. Molecular Ecology 2001, 10:1153-1164.
43. Nilsson C, Reidy CA, Dynesius M, Revenga C. Fragmentation and flow regulation of the world's large river systems. Science 2005, 308:405-408.
44. Northcote TG. Mechanisms of fish migration in rivers. Mechanisms of migration in fishes 1984, 317-355. McCleave JDArnold GPDodson JJNeill WH. eds, New-York, Plenum, pp
45. Ovidio M, Philippart JC. The impact of small physical obstacles on upstream movements of six species of fish -Synthesis of a 5-year telemetry study in the River Meuse basin. Hydrobiologia 2002, 483:55-69.
46. Perez-Espona S, Perez-Barberia FJ, McLeod JE, Jiggins CD, Gordon IJ, Pemberton JM. Landscape features affect gene flow of Scottish Highland red deer (Cervus elaphus). Molecular Ecology 2008, 17:981-996.
47. Poulet N. Impact of weirs on fish communities in a piedmont stream. River Research and Applications 2007, 23:1038-1047.
48. Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
49. R: A language and environment for statistical computing 2009, http://www.R-project.org, Vienna, Austria, Available at:: R Foundation for Statistical Computing
50. Raeymaekers JAM, Maes GE, Geldof S, Hontis I, Nackaerts K, Volckaert FAM. Modeling genetic connectivity in sticklebacks as a guideline for river restoration. Evolutionary applications 2008, 1:475-488.
51. Raymond M, Rousset F. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 1995, 86:-249.
52. Robertson A. Selection for heterozygotes in small populations. Genetics 1962, 47:1291-1300.
53. Rousset F. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 1997, 145:1219-1228.
54. Saunders DA, Hobbs RJ, Margules CR. Biological consequences of ecosystem fragmentation: a review. Conservation Biology 1991, 5:18-32.
55. Schaffer ML. Minimum population sizes for species conservation. BioScience 1981, 131643 134
56. Sokal R, Rohlf FJ. Biometry: the principles and practice of statistics in biological research 1994, New York, W. H. Freeman and Co, pp
57. Taylor EB. Species pairs of north temperate freshwater fishes: evolution, taxonomy, and conservation. Reviews in Fish Biology and Fisheries 1999, 9:299-324.
58. Utzinger J, Roth C, Peter A. Effects of environmental parameters on the distribution of bullhead Cottus gobio with particular consideration of the effects of obstructions. Journal of Applied Ecology 1998, 35:882-892.
59. Van Loon EE, Cleary DFR, Fauvelot C. ARES: software to compare allelic richness between uneven samples. Molecular Ecology Notes 2007, 7:579-582.
60. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P. MICRO CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 2004, 4:535-538.
61. Vyskocilova M, Simkova A, Martin JF. Isolation and characterization of microsatellites in Leuciscus cephalus (Cypriniformes, Cyprinidae) and cross-species amplification within the family Cyprinidae. Molecular Ecology Notes 2007, 7:1150-1154.
62. Wahlund S. Zusammensetzung von Populationen und Korrelationserscheinungen vom Standpunkt der Vererbungslehre aus betrachtet. Hereditas 1928, 11:65-106.
63. Ward JV, Stanford JA. The serial discontinuity concept of lotic ecosystems. Dynamics of lotic ecosystems 1983, 494. Fontaine TD, Bartell SM. eds, Ann Arbour, MI, USA, Ann Arbor Science, pp
64. Winfield IJ, Townsend CR. The role of cyprinids in ecosystems. Cyprinid fishes: systematics, biology and exploitation 1991, 552-567. Winfield IJ, Nelson JS. eds, London, Chapman & Hall, pp
65. Dams and development: a new framework for decision-making 2000, London, Erthscan Publications Ltd, pp