Microsatellites reveal fine-scale genetic structure in stream-living brown trout

Journal of Fish Biology

Volumn 55, Issue 6, 1999, Pages 1290-1303

  Carlsson, J ^a   Olsen K H ^b   Nilsson, J ^a   Øverli, Ø ^b   Stabell, O B ^c  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b UPPSALA UNIVERSITY   (Sweden)

^c UNIVERSITY OF TROMSØ   (Norway)

Author keywords

Brown trout; Isolation by distance; Micro geographic; Microsatellites; Population differentiation; Salmo trutta

Indexed keywords

SALMO TRUTTA;

EID: 0033390601     PISSN: 00221112     EISSN: None     Source Type: Journal    
DOI: 10.1006/jfbi.1999.1123     Document Type: Article

References (56)

1. Allendorf F. W., Phelps S. R. Use of allelic frequencies to describe population structure. Canadian Journal of Fisheries and Aquatic Sciences. 38:1981;1507-1514.
2. Apostolidis A. P., Trianthaphyllidis C., Kouvatsi A., Economidis P. S. Mitochondrial DNA sequence variation and phylogeography among Salmo trutta L. (Greek brown trout) populations. Molecular Ecology. 6:1997;531-542.
3. Armstrong J. D., Shackley P. E., Gardiner R. Redistribution of juvenile salmonid fishes after localized catastrophic depletion. Journal of Fish Biology. 45:1994;1027-1039.
4. Arnesen A. M., Stabell O. B. Behaviour of stream dwelling brown trout towards odours present in home stream water. Chemoecology. 3:1992;1-7.
5. Bassam B. J., Caetano-Anolles G., Gresshoff P. M. Fast and sensitive silver staining of DNA in polyacrylamide gels. Analytical Biochemistry. 196:1991;80-83.
6. Brown G. E., Brown J. A. Do kin always make better neighbors?: the effect of territory quality. Behavioral Ecology and Sociobiology. 33:1993;225-231.
7. Carvalho G. R. Evolutionary aspects of fish distribution: genetic variability and adaptation. Journal of Fish Biology. 43:1993;53-73.
8. Chakraborty R., Leimar O. Ryman N., Utter F. Population Genetics and Fishery Management. 1987;89-120 University of Washington Press, Seattle.
9. Courtenay S. C., Quinn T. P., Dupuis H. M. C., Groot C., Larkin P. A. Factors affecting the recognition of population-specific odours by juvenile coho salmon. Journal of Fish Biology. 50:1997;1042-1060.
10. Elliott J. M. Quantitative Ecology and the Brown Trout. 1994;Oxford University Press, Oxford.
11. nmicrosatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Journal of Heredity. 71:1993;488-496.
12. Estoup A., Rousset F., Michalakis Y., Cornuet J.-M., Adriamanga M., Guyomard R. Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta). Molecular Ecology. 7:1998;339-353.
13. Ferguson A. Genetic differences among brown trout, Salmo trutta, stocks and their importance for the conservation and management of the species. Freshwater Biology. 21:1989;35-46.
14. Ferguson A., Mason F. M. Allozyme evidence for reproductively isolated sympatric populations of brown trout, Salmo trutta, in Lough Melvin, Ireland. Journal of Fish Biology. 18:1981;629-642.
15. Ferguson A., Taggart J. B. Genetic differentiation among the sympatric brown trout (Salmo trutta) populations of Lough Melvin, Ireland. Biological Journal of the Linnean Society. 43:1991;221-237.
16. Ferguson A., Taggart J. B., Prodöhl P. A., McMeel O., Thompson C., Stone C., McGinnity P., Hynes R. A. The application of molecular markers to the study and conservation of fish populations, with special reference toSalmo. Journal of Fish Biology. 47:1995;103-126.
17. Gall G. A. E. Inbreeding. Ryman N., Utter F. Population Genetics & Fishery Management. 1987;72-74 University of Washington Press, Seattle.
18. Goudet J. FSTat (version 1.2): a computer program to calculate F-statistics. Journal of Heredity. 86:1995;485-486.
19. Gowan C., Young M. K., Fausch K. D., Riley S. C. Restricted movement in resident stream salmonids: A paradigm lost? Canadian Journal of Fisheries and Aquatic Sciences. 51:1994;2626-2637.
20. Halvorsen M., Stabell O. B. Homing behaviour of displaced stream-dwelling brown trout. Animal Behaviour. 39:1990;1089-1097.
21. Hamilton K. E., Ferguson A., Taggart J. B., Tómasson T., Walker A., Fahy E. Post-glacial colonization of brown trout, Salmo trutta L.: Ldh-5 as a phylogeographic marker locus. Journal of Fish Biology. 35:1989;651-664.
22. Hansen M. M., Loeschcke V. Genetic differentiation among Danish brown trout populations, as detected by RFLP analysis of PCR amplified mitochondrial DNA segments. Journal of Fish Biology. 48:1996;422-436.
23. Hansen M. M., Nielsen E. E., Mensberg K. L. D. The problem of sampling families rather than populations: relatedness among individuals in samples of juvenile brown trout Salmo trutta L. Molecular Ecology. 6:1997;469-474.
24. Hendry A. P., Leonetti E. E., Quinn T. P. Spatial and temporal isolating mechanisms: the formation of discrete breeding aggregations of sockeye salmon (Oncorhynchus nerka). Canadian Journal of Zoology. 73:1997;339-352.
25. Hindar K., Jonsson B., Ryman N., Ståhl G. Genetic relationships among landlocked, resident, and anadromous brown trout, Salmo trutta L. Heredity. 66:1991;83-91.
26. Hynes R. A., Ferguson A., McCann M. A. Variation in mitochondrial DNA and post-glacial colonisation of north western Europe by brown trout. Journal of Fish Biology. 48:1996;54-67.
27. Laird P. W., Zijderveld A., Linders K., Rudnicki M. A., Jaenisch R., Berns A. Simplified mammalian DNA isolation procedure. Nucleic Acids Research. 19:1991;4293.
28. McVeigh H. P., Hynes R. A., Ferguson A. Mitochondrial DNA differentiation of sympatric populations of brown trout, Salmo trutta L., from Lough Melvin, Ireland. Canadian Journal of Fisheries and Aquatic Sciences. 52:1995;1617-1622.
29. Móran P., Pendás A. M., García-Vázquez E., Izquierdo J. I., Lóbon-Cervía J. Estimates of gene flow among neighbouring populations of brown trout. Journal of Fish Biology. 46:1995;593-602.
30. Moritz C. Defining 'Evolutionary Significant Units' for conservation. Trends in Ecology and Evolution. 9:1994;373-375.
31. Northcote T. G., Hartmann G. F. The biology and significance of stream trout populations (Salmo spp.) living above and below waterfalls. Polskie Archiwum Hydrobiologii. 35:1988;409-442.
32. Olsén K. H. Chemoattraction between juveniles of two sympatric stocks of Arctic charr (Salvelinus alpinus (L.)) and their gene frequency of serum esterases. Journal of Fish Biology. 28:1986;221-231.
33. Olsén K. H. Sibling recognition in juvenile Arctic charr, Salvelinus alpinus (L.). Journal of Fish Biology. 34:1989;571-581.
34. Olsén K. H., Järvi T., Löf A-C. Aggressiveness and kinship in brown trout (Salmo trutta) parr. Behavioral Ecology. 7:1996;445-450.
35. O'Reilly P. T., Hamilton L. C., McConnel S. K., Wright J. M. Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Canadian Journal of Fisheries and Aquatic Sciences. 53:1996;2292-2298.
36. Pemberton J. M., Slate J., Bancroft D. R., Barret A. Nonamplifying alleles at microsatellite loci: a caution for parentage and population studies. Molecular Ecology. 4:1995;249-252.
37. Prodöhl P. A., Taggart J. B., Ferguson A. Genetic variability within and among sympatric brown trout (Salmo trutta) populations: multi-locus DNA fingerprint analysis. Hereditas. 117:1992;45-50.
38. Queller D. C., Goodnight K. F. Estimating relatedness using genetic markers. Evolution. 43:1989;258-275.
39. Quinn T. P. Current controversies in the study of salmon homing. Ethology Ecology & Evolution. 2:1990;49-63.
40. Quinn T. P., Busack C. A. Chemosensory recognition of siblings in juvenile coho salmon (Oncorhynchus kisutch). Animal Behaviour. 33:1985;51-56.
41. Raymond M., Rousset F. GENEPOP (version 1.2) population genetics software for exact test and ecumenicism. Journal of Heredity. 86:1995;248-249.
42. Rice W. R. Analyzing tables of statistical tests. Evolution. 43:1989;223-225.
43. Ricker W. E. Hereditary and environmental factors affecting certain salmonid populations. Simon R. S., Larkin P. A. The Stock Concept in Pacific Salmon. 1972;19-160 University of British Columbia, MacMillan Lectures in Fisheries, Vancouver.
44. Ryman N. Conservation of genetic resources: experience from the brown trout (Salmo trutta). Ryman N. Fish Gene Pools - Preservation of Genetic Resources in Relation to Wild Fish Stock. 1981;61-74 Ecological Bulletin, Stockholm.
45. Ryman N. Patterns of distribution of biochemical genetic variation in salmonids: differences between species. Aquaculture. 33:1983;1-21.
46. Ryman N., Allendorf F. W., Ståhl G. Reproductive isolation with little genetic divergence in sympatric populations of brown trout (Salmo trutta). Genetics. 92:1979;247-262.
47. Skaala Ø., Nævdal G. Genetic differentiation between freshwater resident and anadromous brown trout, Salmo trutta, within watercourses. Journal of Fish Biology. 34:1989;597-605.
48. Slettan A., Olsaker I., Lie Ø. Atlantic salmon, Salmo salar, microsatellites at the SSOSL25, SSOSL85, SSOSL311, SSOSL417 loci. Animal Genetics. 26:1995;281-282.
49. Slettan A., Olsaker I., Lie Ø. Polymorphic Atlantic salmon, Salmo salar L., microsatellites at the SSOSL438, SSOSL439 andSSOSL444 loci. Animal Genetics. 27:1996;57-58.
50. Stabell O. B. Detection of natural odorants by Atlantic salmon parr using positive rheotaxis olfactometry. Brannon E. L., Salo E. O. Proceedings of the salmon and trout migratory behavior symposium 1981. 1982;71-78 School of Fisheries, University of Washington, Seattle.
51. Stabell O. B. Homing and olfaction in salmonids: a critical review with special reference to the Atlantic salmon. Biological Review. 59:1984;333-388.
52. Stabell O. B. Olfactory control of homing behaviour in salmonids. Hara T. J. Fish Chemoreception. 1992;249-270 Chapman & Hall, London.
53. Stuart T. A. The migrations and homing behaviour of brown trout (Salmo trutta L.). Freshwater and Salmon Fisheries Research. 18:1957;1-27.
54. Tessier N., Bernatchez L. Stability of population structure and genetic diversity across generations assessed by microsatellites among sympatric populations of landlocked Atlantic salmon (Salmo salar L.). Molecular Ecology. 8:1999;169-179.
55. Waples R. S. Separating the wheat from the chaff: Patterns of genetic differentiation in high gene flow species. Journal of Heredity. 89:1998;438-450.
56. Wright S. The genetical structure of populations. Annals of Eugenics. 15:1951;232-354.