EST sequencing and SSR marker development from cultivated peanut (Arachis hypogaea L.)

Electronic Journal of Biotechnology

Volumn 13, Issue 3, 2010, Pages 1-9

  Song, Guo Qi ^a   Li, Meng Jun ^a   Xiao, Han ^a   Wang, Xing Jun ^a   Tang, Rong Hua ^b   Xia, Han ^a   Zhao, Chuan Zhi ^a   Bi, Yu Ping ^a  

^a SHANDONG PEANUT RESEARCH INSTITUTE   (China)

^b NATIONAL ENGINEERING RESEARCH CENTER FOR NON FOOD BIOREFINERY   (China)

Author keywords

Arachis hypogaea L.; Cultivars; EST SSR; Polymorphism; Wild type peanut

Indexed keywords

ARACHIS HYPOGAEA; CULTIVARS; DINUCLEOTIDES; EST-SSR; EXPRESSED SEQUENCE TAGS; GENETIC DIVERSITY; MARKER-ASSISTED SELECTION; MOLECULAR MARKER; PRIMER DESIGN; SSR MARKERS; TRINUCLEOTIDES; WILD TYPES;

AMPLIFICATION; CLONING; CULTIVATION;

POLYMORPHISM;

COMPLEMENTARY DNA; DINUCLEOTIDE; HEXANUCLEOTIDE; MESSENGER RNA; NUCLEOTIDE; PENTANUCLEOTIDE; TETRANUCLEOTIDE; TRINUCLEOTIDE; UNCLASSIFIED DRUG;

AGRONOMIC TRAIT; ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; EXPRESSED SEQUENCE TAG; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC VARIABILITY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PEANUT; SEQUENCE ANALYSIS; SIMPLE SEQUENCE REPEAT; SPECIES CULTIVATION; UNINDEXED SEQUENCE;

ARACHIS HYPOGAEA;

EID: 77954078214     PISSN: None     EISSN: 07173458     Source Type: Journal    
DOI: 10.2225/vol13-issue3-fulltext-10     Document Type: Article

References (26)

1. BUROW, MARK D.; SIMPSON, CHARLES E.; STARR, JAMES L. and PATERSON, ANDREW H. Transmission genetics of chromatin from a synthetic amphidiploid to cultivated peanut (Arachis hypogaea L.): Broadening the gene pool of a monophyletic polyploid species. Genetics, October 2001, vol. 159, no. 2, p. 823-837.
2. CUC, LUU M.; MACE, EMMA S.; CROUCH, JONATHAN H.; QUANG, VU D.; LONG, TRAND D. and VARSHNEY, RAJEEV K. Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, 2008, vol. 8, no. 55.
3. DWIVEDI, S.L.; GURTU, S.; CHANDRA, S.; YUEJIN, W. and NIGAM, S.N. Assessment of genetic diversity among selected groundnut gemplasm. I: RAPD analysis. Plant Breeding, August 2001, vol. 120, no. 4, p. 345-349.
4. FERGUSON, M.E.; BUROW, M.D.; SCHULZE, S.R.; BRAMEL, P.J.; PATERSON, A.H.; KRESOVICH, S. and MITCHELL, S. Microsatellite identification and characterization in peanut (A. hypogaea L.). Theoretical and Applied Genetics, April 2004, vol. 108, no. 6, p. 1064-1070.
5. GAO, DONG; DU, FEI and ZHU, YOU-YONG. Low-background and high-resolution contracted silver-stained method in polyacrylamide gels electrophoresis. Hereditas (Beijing), June 2009, vol. 31, no. 6, p. 668-673.
6. GIMENES, M.A.; LOPES, C.R. and VALLS, J.F. M. Genetic relationship among Arachis species based on AFLP. Genetics and Molecular Biology, 2002, vol. 25, no. 3, p. 349-353.
7. GIMENES, MARCOS A.; HOSHINO, ANDREA A.; BARBOSA, ANDREA V.; PALMIERI, DARIO A. and LOPES, CATALINA R. Characterization and transferability of microsatellite markers of the cultivated peanut (Arachis hypogaea). BMC Plant Biology, 2007, vol. 7, no. 9.
8. HAN, ZHI-GUO; WANG, CHANG-BIAO; SONG, XIAN-LIANG; GUO, WANG-ZHEN; GOU, JIN-YING; LI, CHUN-HONG; CHEN, XIA-OYA and ZHANG, TIAN-ZHEN. Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. TAG Theoretical and Applied Genetics, February 2006, vol. 112, no. 3, p. 430-439.
9. HE, GUO-HAO and PRAKASH, CHANNAPATNA. Evaluation of genetic relationship among botanical varieties of cultivated peanut (Arachis hypogaea L.) using AFLP markers. Genetic Resources and Crop Evolution, August 2001, vol. 48, no. 4, p. 347-352.
10. HE, GUO-HAO; MENG, RONG-HUA; NEWMAN, MELANIE; GAO, GUO-QUING; PITTMAN, ROY. N. and PRAKASH, CHANNAPATNA S. Microsatellites as DNA markers in cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, 2003, vol. 3, no. 3.
11. HOLBROOK, C.C. and STALKER, H.T. Peanut breeding and genetic resources. Plant Breeding Reviews, 2003, vol. 22, p. 297-356.
12. LAGERCRANTZ, ULF; ELLEGREN, HANS and ANDERSSON, LEIF. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Research, March 1993, vol. 21, no. 5, p. 1111-1115.
13. LEAL-BERTIOLI, SORAYA C.M.; JOSE, ANA CAROLINA V.F.; ALVES FREITAS, DIONE M.T.; MORETZSOHN, MÁRCIO C.; GUIMARÃES, PATRICIA M.; NIELEN, STEPHAN; VIDIGAL, BRUNA S.; PEREIRA, RINALDO W.; PIKE, JODIE; FÁVERO, ALESSANDRA P.; PARNISKE, MARTIN; VARSHNEY, RAJEEV K. and BERTIOLI, DAVID J. Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 2009, vol. 9, no. 112.
14. LI, MEN-JUN; LI, AI-QUIN; XIA, HAN; ZHAO, CHUAN-ZHI; LI, CHANG-SHENG; WAN, SHU-BO; BI, YU-PING and WANG, XING-JUN. Cloning and sequence analysis of putative type II fatty acid synthase genes from Arachis hypogaea L. Journal of Biosciences, June 2009, vol. 34, no. 2, p. 227-238.
15. LI, MEN-JUN; LI, AI-QUIN; XIA, HAN; ZHAO, CHUAN-ZHI; LI, AI-QI; LI, CHANG-SHENG; WAN, SHU-BO; BI, YU-PING and WANG, XING-JUN. Isolation and characterization of putative acetyl-CoA carboxylases in Arachis hypogaea L. Plant Molecular Biology Reporter, March 2010, vol. 28, no. 1, p. 56-58.
16. LIANG, XUAN-QIANG; CHEN, XIAO-PING; HONG, YAN-BIN; LIU, HAI-YAN; ZHOU, GUI-YUAN; LI, SHAO-XIONG and GUO, BAO-ZHU. Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species. BMC Plant Biology, 2009, vol. 9, no. 35.
17. MORETZSOHN, M.C.; LEOI, L.; PROITE, K.; GUIMARÃES, P.M.; LEAL-BERTIOLI, S.C.M.; GIMENES, M.A.; MARTINS, W.S.; VALLS, J.F.M.; GRATTAPAGLIA, D. and BERTIOLI, D.J. A microsatelite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). TAG Theoretical and Applied Genetics, October 2005, vol. 111, no. 6, p. 1060-1071.
18. MURRAY, M. and THOMPSON, W. Rapid isolation of high-molecular weight plant DNA. Nucleic Acids Research, 1980, vol. 8, no.19, p. 4321-4325.
19. PROITE, KARINA; LEAL BERTIOLI, SORAYA C.M.; BERTIOLI, DAVID J.; MORETZSOHN, MÁRCIO C.; DA SILVA, FELIPE R.; MARTINS, NATALIA F. and GUIMARÃES, PATRICIA M. ESTs from a wild Arachis species for gene discovery and marker development. BMC Plant Biology, 2007, vol. 7, no. 7.
20. SIMPSON, C.E.; STARR, J.L.; NELSON, S.C.; WOODARD, K.E. and SMITH, O.D. Registration of TxAG-6 and TxAG-7 peanut germplasm. Crop Science, November 1993, vol. 33, no. 6, p. 1418.
21. SIMPSON, C.E. and STARR, J.L. Registration of COAN peanut. Crop Science, May 2001, vol. 41, no. 3, p. 918.
22. STALKER, H.T. and BEUTE, M.K. Registration of four leaf spot resistant peanut germplasm lines. Crop Science, September 1993, vol. 33, p. 1117.
23. SUBRAMANIAN, V.; GURTU, S.; NAGESWARA RAO, R.C. and NIGAM, S.N. Identification of DNA polymorphism in cultivated groundnut using random amplified polymorphic DNA (RAPD) assay. Genome, August 2000, vol. 43, no. 4, p. 656-660.
24. TALLURY, S.P.; HILU, K.W.; MILLA, S.R.; FRIEND, S.A.; ALSAGHIR, M.; STALKER, H.T. and QUANDT, D. Genomic affinities in Arachis section Arachis (Fabaceae): molecular and cytogenetic evidence. Theoretical and Applied Genetics, November 2005, vol. 111, no. 7, p. 1229-1237.
25. WANG, Z.; WEBER, J.L.; ZHONG, G. and TANKSLEY, S.D. Survey of plant short tandem DNA repeats. Theoretical and Applied Genetics, April 1994, vol. 88, no. 1, p. 1-6.
26. WANG, X.J.; SU, L.; QUAN, X.Q.; SHAN, L.; ZHANG, H.T. and BI Y.P. Peanut (Arachis hypogaea L.) EST sequencing, gene cloning an Agrobacteria-mediated transformation. In: International groundnut conference on groundnut Aflatoxin and genomics. (5th -9th November, 2006, Guangzhou, China). Abstracts, 2006. p. 59.