Cloning and sequence analysis of putative type II fatty acid synthase genes from Arachis hypogaea L.

Journal of Biosciences

Volumn 34, Issue 2, 2009, Pages 227-238

  Li, Meng Jun ^a   Li, Ai Qin ^a   Xia, Han ^a   Zhao, Chuan Zhi ^a   Li, Chang Sheng ^a   Wan, Shu Bo ^a   Bi, Yu Ping ^a   Wang, Xing Jun ^a  

^a AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

Author keywords

Arachis hypogaea L.; EST sequencing; Gene cloning; Type II FAS

Indexed keywords

3 OXOACYL ACYL CARRIER PROTEIN REDUCTASE; ACYL CARRIER PROTEIN; BETA HYDROXYACYL ACYL CARRIER PROTEIN DEHYDRASE; BETA KETOACYL ACYL CARRIER PROTEIN SYNTHASE 1; BETA KETOACYL ACYL CARRIER PROTEIN SYNTHASE 2; BETA KETOACYL ACYL CARRIER PROTEIN SYNTHASE 3; ENOYL ACYL CARRIER PROTEIN REDUCTASE; FATTY ACID SYNTHASE; MALONYL COENZYME A ACYL CARRIER PROTEIN TRANSACYLASE; UNCLASSIFIED DRUG;

CATALYSIS; COLIFORM BACTERIUM; ENZYME ACTIVITY; FATTY ACID; GENETIC ANALYSIS; MITOCHONDRION; NUT; PLASTID; POLYMORPHISM; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; ESCHERICHIA COLI; FATTY ACID SYNTHESIS; GENE EXPRESSION; GENE SEQUENCE; MITOCHONDRION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PEANUT; PLASTID; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; UNINDEXED SEQUENCE;

AMINO ACID SEQUENCE; ARACHIS HYPOGAEA; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DNA, COMPLEMENTARY; ESCHERICHIA COLI; FATTY ACID SYNTHETASE COMPLEX; GENE LIBRARY; MITOCHONDRIA; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PLASTIDS; RNA; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ARACHIS HYPOGAEA; EMBRYOPHYTA; ESCHERICHIA COLI;

EID: 69249199130     PISSN: 02505991     EISSN: 02505991     Source Type: Journal    
DOI: 10.1007/s12038-009-0027-1     Document Type: Article

References (51)

1. A. Abbadi M. Brummel F. Spener 2000 Knockout of the regulatory site of 3-ketoacyl-ACP synthase III enhances shortand medium-chain acyl-ACP synthesis Plant J. 24 1 9
2. C. Bolle R. G. Herrmann R. Oelmuller 1996 Different sequences for 5-untranslated leaders of nuclear genes for plastid proteins affect the expression of the beta-glucuronidase gene Plant Mol. Biol. 32 861 868
3. G. Bonaventure J. B. Ohlrogge 2002 Differential regulation of mRNA levels of acyl carrier protein isoforms in Arabidopsis Plant Physiol. 128 223 235
4. A. S. Carlsson S. T. LaBrie A. J. Kinney P. von Wettstein-Knowles J. Browse 2002 A KAS2 cDNA complements the phenotypes of the Arabidopsis fab1 mutant that differs in a single residue bordering the substrate binding pocket Plant J. 29 761 770
5. J. Chen D. Post-Beittenmiller 1996 Molecular cloning of a cDNA encoding 3-ketoacyl-acyl carrier protein synthase III from leek Gene 182 45 52
6. R. C. Clough A. L. Matthis S. R. Barnum J. G. Jaworski 1992 Purification and characterization of 3-ketoacyl-acyl carrier protein synthase III from spinach J. Biol. Chem. 267 20992 20998
7. K. Dehesh H. Tai P. Edwards J. Byrne J. G. Jaworski 2001 Overexpression of 3-ketoacyl-acyl-carrier protein synthase IIIs in plants reduces the rate of lipid synthesis Plant Physiol. 125 1103 1114
8. M. Fisher J. T. M. Kroon W. Martindale A. R. Stuitje A. R. Slabas J. B. Rafferty 2000 The X-ray structure of Brassica napus β-keto acyl carrier protein reductase and its implications for substrate binding and catalysis Structure 8 339 347
9. B. S. Gulliver A. R. Slabas 1994 Acetoacyl-acyl carrier protein synthase from avocado: its purification, characterisation and clear resolution from acetyl CoA:ACP transacylase Plant Mol. Biol. 25 179 191
10. L. Han S. Lobo K. A. Reynold 1998 Characterization of β-ketoacyl-acyl carrier protein synthase III from Streptomyces glaucescens and its role in initiation of fatty acid biosynthesis J. Bacteriol. 180 4481 4486
11. Hansen L and Kauppinen S 1991 Barley acyl carrier protein II: nucleotide sequence of cDNA clones and chromosomal location of the Acl2 gene; Plant Physiol. 97 472-474
12. Hansen P. von Wettstein-Knowles 1991 The barley genes Acl1 and Acl3 encoding acyl carrier proteins I and III are located on different chromosomes Mol. Gen. Genet. 229 467 478
13. R. J. Heath C. O. Rock 1996 Roles of the FabA and FabZ β-hydroxyacyl-acyl carrier protein dehydratases in Escherichia coli fatty acid biosynthesis J. Biol. Chem. 271 27795 27801
14. A. Hlousek-Radojcic D. Post-Beittenmiller J.B. Ohlrogge 1992 Expression of constitutive and tissue-specific acyl carrier protein isoforms in Arabidopsis Plant Physiol. 98 206 214
15. M. M. Kater G. M. Koningstein H. J. Nijkamp A. R. Stuitje 1991 cDNA cloning and expression of Brassica napus enoyl-acyl carrier protein reductase in Escherichia coli Plant Mol. Biol. 17 895 909
16. A. T. Keatinge-Clay A. A. Shelat D. F. Savage S. C. Tsai L. J. Miercke J. D. O'Connell C. Khosla R. M. Stroud 2003 Catalysis, specificity, and ACP docking site of Streptomyces coelicolor malonyl-CoA:ACP transacylase Structure 11 147 154
17. M. S. Kimber F. Martin Y. J. Lu S. Houston M. Vedadi A. Dharamsi K. M. Fiebig M. Schmid C. O. Rock 2004 The structure of (3R)-hydroxyacyl-acyl carrier protein dehydratase (FabZ) from Pseudomonas aeruginosa J. Biol. Chem. 2792 52593 52602
18. B. Klein K. Pawlowski C. Horicke-Grandpierre J. Schell R. Topfer 1992 Isolation and characterization of a cDNA from Cuphea lanceolata encoding a beta-ketoacyl-ACP reductase Mol. Gen. Genet. 233 122 128
19. J. Kopka M. Robers R. Schuch F. Spener 1993 Acyl carrier proteins from developing seeds of Cuphea lanceolata Ait Planta 191 102 111
20. C. Y. Lai J. E. Cronan 2003 β-ketoacyl-acyl carrier protein synthase III (FabH) is essential for bacterial fatty acid synthesis J. Biol. Chem. 278 51494 51503
21. G. Lamppa C. Jacks 1991 Analysis of two linked genes coding for the acyl carrier protein (ACP) from Arabidopsis thaliana (columbia) Plant Mol. Biol. 16 469 474
22. M. Leesong B. S. Henderson J. R. Gillig J. M. Schwab J. L. Smith 1996 Structure of a dehydratase-isomerase from the bacterial pathway for biosynthesis of unsaturated fatty acids: two catalytic activities in one active site Structure 4 253 264
23. S. Mekhedov E. B. Cahoon J. Ohlrogge 2001 An unusual seed-specific 3-ketoacyl-ACP synthase associated with the biosynthesis of petroselinic acid in coriander Plant Mol. Biol. 47 507 518
24. M. R. Mofid R. Finking M. A. Marahiel 2002 Recognition of hybrid peptidyl carrier proteins/acyl carrier proteins in nonribosomal peptide synthetase modules by the 4-phosphopan tetheinyl transferases AcpS and Sfp J. Biol. Chem. 277 17023 17031
25. M. C. Moretzsohn M. S. Hopkins S. E. Mitchell S. Kresovich J. F. M. Valls M. E. Ferreira 2004 Genetic diversity of peanut (Arachis hypogaea L.) and its wild relatives based on the analysis of hypervariable regions of the genome BMC Plant Biol. 4 11
26. J. G. Olsen A. Kadziola P. von Wettstein-Knowles M. Siggaard-Andersen Y. Lindquist S. Larsen 1999 The X-ray crystal structure of beta-ketoacyl [acyl carrier protein] synthase I FEBS Lett. 460 46 52
27. J. G. Olsen A. V. Rasmussen P. von Wettstein-Knowles A. Henriksen 2004 Structure of the mitochondrial beta-ketoacyl-[acyl carrier protein] synthase from Arabidopsis and its role in fatty acid synthesis FEBS Lett. 577 170 174
28. M. S. Pidkowich H. T. Nguyen I. Heilmann T. Ischebeck J. Shanklin 2007 Modulating seed beta-ketoacyl-acyl carrier protein synthase II level converts the composition of a temperate seed oil to that of a palm-like tropical oil Proc. Natl. Acad. Sci USA 104 4742 4747
29. M. A. Post-Beittenmiller A. Hlousek-Radojcic J. B. Ohlrogge 1989 DNA sequence of a genomic clone encoding an Arabidopsis acyl carrier protein (ACP) Nucleic Acids Res. 17 1777
30. A. C. Price Y. M. Zhang C. O. Rock S. W. White 2001 Structure of β-ketoacyl-[acyl carrier protein] reductase from Escherichia coli: negative cooperativity and its structural basis Biochemistry 40 12772 12781
31. X. Qiu C. A. Janson A. K. Konstantinidis S. Nwagwu C. Silverman W. W. Smith S. Khandekar J. Lonsdale S. S. Abdel-Meguid 1999 Crystal structure of beta-ketoacyl-acyl carrier protein synthase III. A key condensing enzyme in bacterial fatty acid biosynthesis J. Biol. Chem. 274 36465 36471
32. J. B. Rafferty J. W. Simon C. Baldock P. J. Artymiuk P. J. Baker A. R. Stuitje A. R. Slabas D. W. Rice 1995 Common themes in redox chemistry emerge from the X-ray structure of oilseed rape (Brassica napus) enoyl acyl carrier protein reductase Structure 3 927 938
33. S. Rafi P. Novichenok S. Kolappan X. Zhang C. F. Stratton R. Rawat C. Kisker C. Simmerling P. J. Tonge 2006 Structure of acyl carrier protein bound to FabI, the FASII enoyl reductase from Escherichia coli J. Biol. Chem. 281 39285 39293
34. D. E. Scherer V. C. Knauf 1987 Isolation of a cDNA clone for the acyl carrier protein-I of spinach Plant Mol. Biol. 9 127 134
35. K. M. Schmid J. B. Ohlrogge 1990 A root acyl carrier protein-II from spinach is also expressed in leaves and seeds Plant Mol. Biol. 15 765 778
36. L. Serre E. C. Verbree Z. Dauter A. R. Stuitje Z. S. Derewenda 1995 The Escherichia coli malonyl-CoA:acyl carrier protein transacylase at 1.5-A resolution. Crystal structure of a fatty acid synthase component J. Biol. Chem. 270 12961 12964
37. D. K. Shintani J. B. Ohlrogge 1994 The characterization of a mitochondrial acyl carrier protein isoform isolated from Arabidopsis thaliana Plant Physiol. 104 1221 1229
38. J. W. Simon A. R. Slabas 1998 cDNA cloning of Brassica napus malonyl-CoA:ACP transacylase (MCAT) (fabD) and complementation of an E. coli MCAT mutant FEBS Lett. 435 204 206
39. M. B. Slabaugh H. Tai J. Jaworski S. J. Knapp 1995 cDNA clones encoding beta-ketoacyl-acyl carrier protein synthase III from Cuphea wrightii Plant Physiol. 108 443 444
40. M. C. Suh D. J. Schultz J. B. Ohlrogge 1999 Isoforms of acyl carrier protein involved in seed-specific fatty acid synthesis Plant J. 17 679 688
41. H. Tai J. G. Jaworski 1993 3-Ketoacyl-acyl carrier protein synthase III from spinach (Spinacia oleracea) is not similar to other condensing enzymes of fatty acid synthase Plant Physiol. 103 1361 1367
42. Tai H, Post-Beittenmiller D and Jaworski J G 1994 Cloning of a cDNA encoding 3-ketoacyl-acyl carrier protein synthase III from Arabidopsis; Plant Physiol. 106 801-802
43. J. T. Tsay W. Oh T. J. Larson S. Jackowski C. O. Rock 1992 Isolation and characterization of the β-ketoacyl-acyl carrier protein synthase III gene (fabH) from Escherichia coli K-12 J. Biol. Chem. 267 6807 6814
44. M. Voetz B. Klein J. Schell R. Topfer 1994 Three different cDNAs encoding acyl carrier proteins from Cuphea lanceolata Plant Physiol. 106 785 786
45. P. von Wettstein-Knowles J. G. Olsen K. A. McGuire S. Larsen 2000 Molecular aspects of β-ketoacyl synthase (KAS) catalysis Biochem. Soc. Trans. 28 601 607
46. H. Wada D. K. Shintani J. B. Ohlrogge 1997 Why do mitochondria synthesize fatty acids? Evidence for involvement in lipoic acid production Proc. Natl. Acad. Sci. USA 94 1591 1596
47. S. W. White J. Zheng Y. M. Zhang C. O. Rock 2005 The structural biology of type II fatty acid biosynthesis Annu. Rev. Biochem. 74 791 831
48. R. Yasuno P. von Wettstein-Knowles H. Wada 2004 Identification and molecular characterization of the beta-ketoacyl-[acyl carrier protein] synthase component of the Arabidopsis mitochondrial fatty acid synthase J. Biol. Chem. 279 8242 8251 (Pubitemid 38294716)
49. Y. M. Zhang H. Marrakchi S. W. White C. O. Rock 2003 The application of computational methods to explore the diversity and structure of bacterial fatty acid synthase J. Lipid Res. 44 1 10
50. Y. M. Zhang M. S. Rao R. J. Heath A. C. Price A. J. Olson C. O. Rock S. W. White 2001 Identification and analysis of the acyl carrier protein (ACP) docking site on β-ketoacyl-ACP synthase III J. Biol. Chem. 276 8231 8238
51. Y. M. Zhang B. Wu J. Zheng C. O. Rock 2003 Key residues responsible for acyl carrier protein and β-ketoacyl-acyl carrier protein reductase (FabG) interaction J. Biol. Chem. 278 52935 52943