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Volumn , Issue , 2010, Pages

Fast Smith-Waterman hardware implementation

Author keywords

Computational biology; Hardware acceleration; RVE; Sequence alignment

Indexed keywords

COMPUTATIONAL BIOLOGY; DATAFLOW; FASTER IMPLEMENTATION; HARDWARE ACCELERATION; HARDWARE IMPLEMENTATIONS; SEQUENCE ALIGNMENTS; SEQUENCE DATABASE; SMITH-WATERMAN;

EID: 77954055095     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IPDPSW.2010.5470748     Document Type: Conference Paper
Times cited : (5)

References (10)
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    • September
    • Z. Nawaz, M. Shabbir, Z. Al-Ars, and K. Bertels, "Acceleration of smith-waterman using recursive variable expansion," in DSD-2008, pp. 915-922, September 2008.
    • (2008) DSD-2008 , pp. 915-922
    • Nawaz, Z.1    Shabbir, M.2    Al-Ars, Z.3    Bertels, K.4
  • 2
    • 77949354137 scopus 로고    scopus 로고
    • Efficient hardware generation for dynamic programming problems
    • December
    • Z. Nawaz, T. P. Stefanov, and K. Bertels, "Efficient hardware generation for dynamic programming problems," in ICFPT'09, December 2009.
    • (2009) ICFPT'09
    • Nawaz, Z.1    Stefanov, T.P.2    Bertels, K.3
  • 3
    • 79955159964 scopus 로고    scopus 로고
    • High speed homology search using run-time reconfiguration
    • Y. Yamaguchi, Y. Miyajima, T. Maruyama, and A. Konagaya, "High speed homology search using run-time reconfiguration," in FPL '02, pp. 281-291, 2002.
    • (2002) FPL '02 , pp. 281-291
    • Yamaguchi, Y.1    Miyajima, Y.2    Maruyama, T.3    Konagaya, A.4
  • 7
    • 64849090268 scopus 로고    scopus 로고
    • Hardware implementation of the smith-waterman algorithm using recursive variable expansion
    • December
    • L. Hasan, Z. Al-Ars, Z. Nawaz, and K. Bertels, "Hardware implementation of the smith-waterman algorithm using recursive variable expansion," in IDT'08, December 2008.
    • (2008) IDT'08
    • Hasan, L.1    Al-Ars, Z.2    Nawaz, Z.3    Bertels, K.4
  • 8
    • 77950978103 scopus 로고    scopus 로고
    • An efficient and high performance linear recursive variable expansion implementation of the smith-waterman algorithm
    • L. Hasan and Z. Al-Ars, "An efficient and high performance linear recursive variable expansion implementation of the smith-waterman algorithm," in IEEE EMBS'09, 2009.
    • (2009) IEEE EMBS'09
    • Hasan, L.1    Al-Ars, Z.2
  • 9
    • 0020484488 scopus 로고
    • An improved algorithm for matching biological sequences
    • December
    • O. Gotoh, "An improved algorithm for matching biological sequences.," J Mol Biol, vol. 162, pp. 705-708, December 1982.
    • (1982) J Mol Biol , vol.162 , pp. 705-708
    • Gotoh, O.1
  • 10
    • 77954067163 scopus 로고    scopus 로고
    • Experiences on 64 and 150 fpga systems
    • O. Storaasli and D. Strenski, "Experiences on 64 and 150 fpga systems," in RSSI'08, 2008.
    • (2008) RSSI'08
    • Storaasli, O.1    Strenski, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.