-
1
-
-
0025183708
-
Basic local alignment search tool
-
S. F. Altschul et al. Basic local alignment search tool. J. Mol. Biol., pages 403-410, 1990.
-
(1990)
J. Mol. Biol
, pp. 403-410
-
-
Altschul, S.F.1
-
2
-
-
0033976454
-
Genbank
-
D. A. Benson et al. Genbank. Nucl. Acids Res., 28(1):15-18, 2000.
-
(2000)
Nucl. Acids Res
, vol.28
, Issue.1
, pp. 15-18
-
-
Benson, D.A.1
-
4
-
-
0037255072
-
The swiss-prot protein knowledgebase and its supplement trembl in 2003
-
B. Boeckmann et al. The swiss-prot protein knowledgebase and its supplement trembl in 2003. Nucleic Acids Research, 31:365-370, 2003.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
-
5
-
-
0028581714
-
A simd solution to the sequence comparison problem on the mgap
-
M. Borah et al. A simd solution to the sequence comparison problem on the mgap. In ASAP, 1994.
-
(1994)
ASAP
-
-
Borah, M.1
-
6
-
-
0001923233
-
Survey of new data and computer methods of analysis
-
M. O. Dayhoff. Survey of new data and computer methods of analysis. In Atlas of Protein Sequence and Structure, volume 5, page 29, 1978.
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, pp. 29
-
-
Dayhoff, M.O.1
-
7
-
-
33846697176
-
Striped smith-waterman speeds database searches six times over other simd implementations
-
M. Farrar. Striped smith-waterman speeds database searches six times over other simd implementations. Bioinformatics, 23(2):156-161, 2007.
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 156-161
-
-
Farrar, M.1
-
8
-
-
33846088142
-
The molecular biology database collection: 2007 update
-
1, January
-
M. Y. Galperin. The molecular biology database collection: 2007 update. Nucleic Acids Research, 35:D3-D4(1), January 2007.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Galperin, M.Y.1
-
9
-
-
48349133970
-
Hardware acceleration of sequence alignment algorithms - an overview
-
September
-
L. Hasan, Z. Al-Ars, and S. Vassiliadis. Hardware acceleration of sequence alignment algorithms - an overview. In DTIS'07, pages 96-101, September 2007.
-
(2007)
DTIS'07
, pp. 96-101
-
-
Hasan, L.1
Al-Ars, Z.2
Vassiliadis, S.3
-
11
-
-
57649226177
-
A reconfigurable accelerator for smith-waterman algorithm
-
Dec
-
X. Jiang et al. A reconfigurable accelerator for smith-waterman algorithm. IEEE Transactions on Circuits and Systems II, 54(12):1077-1081, Dec. 2007.
-
(2007)
IEEE Transactions on Circuits and Systems II
, vol.54
, Issue.12
, pp. 1077-1081
-
-
Jiang, X.1
-
12
-
-
0025272240
-
Rapid and sensitive sequence comparison with fastp and fasta
-
D. J. Lipman and W. R. Pearson. Rapid and sensitive sequence comparison with fastp and fasta. Methods Enzymol., 183:63-98, 1990.
-
(1990)
Methods Enzymol
, vol.183
, pp. 63-98
-
-
Lipman, D.J.1
Pearson, W.R.2
-
13
-
-
50149108586
-
Recursive variable expansion: A loop transformation for reconfigurable systems
-
Z. Nawaz et al. Recursive variable expansion: A loop transformation for reconfigurable systems. In ICFPT'07, 2007.
-
(2007)
ICFPT'07
-
-
Nawaz, Z.1
-
14
-
-
30344460642
-
Reconfigurable architectures for bio-sequence database scanning on fpgas
-
Dec
-
T. Oliver, B. Schmidt, and D. Maskell. Reconfigurable architectures for bio-sequence database scanning on fpgas. IEEE Transactions on Circuits and Systems II, 52(12):851-855, Dec. 2005.
-
(2005)
IEEE Transactions on Circuits and Systems II
, vol.52
, Issue.12
, pp. 851-855
-
-
Oliver, T.1
Schmidt, B.2
Maskell, D.3
-
15
-
-
84966687060
-
Massively parallel solutions for molecular sequence analysis
-
B. Schmidt, H. Schröder, and M. Schimmler. Massively parallel solutions for molecular sequence analysis. In IPDPS '02, page 201, 2002.
-
(2002)
IPDPS '02
, pp. 201
-
-
Schmidt, B.1
Schröder, H.2
Schimmler, M.3
-
16
-
-
0019887799
-
Identification of common molecular subsequences
-
T. Smith and M. Waterman. Identification of common molecular subsequences. J. Mol. Biol., 147:195-197, 1981.
-
(1981)
J. Mol. Biol
, vol.147
, pp. 195-197
-
-
Smith, T.1
Waterman, M.2
-
17
-
-
0002164370
-
Improved sensitivity of nucleic acid database search using application-specific scoring matrices
-
D. States, W. Gish, and S. Altschul. Improved sensitivity of nucleic acid database search using application-specific scoring matrices. In Methods: A companion to Methods in Enzymology, volume 3, pages 66 - 77, 1991.
-
(1991)
Methods: A companion to Methods in Enzymology
, vol.3
, pp. 66-77
-
-
States, D.1
Gish, W.2
Altschul, S.3
-
18
-
-
79955159964
-
High speed homology search using runtime reconfiguration
-
Y. Yamaguchi, Y. Miyajima, T. Maruyama, and A. Konagaya. High speed homology search using runtime reconfiguration. In FPL '02, pages 281-291, 2002.
-
(2002)
FPL '02
, pp. 281-291
-
-
Yamaguchi, Y.1
Miyajima, Y.2
Maruyama, T.3
Konagaya, A.4
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